mRNA_H-paniculata_contig454.11401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig454.11401.1
Unique NamemRNA_H-paniculata_contig454.11401.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig454.11401.1 vs. uniprot
Match: D8LRH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH5_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 5.940e-15
Identity = 89/246 (36.18%), Postives = 122/246 (49.59%), Query Frame = 1 
Query:  196 EKSLESKREDFEKLKELSVHMDNIVQRLSTFFPVADDEEGQEEQHSSPSVXXXXXXVPPEQPLRESRDTAVWARARTMDRXXXXXXXXXXXXXSVASGRYFDEDSLDTT----RH---EHNVVRRAPSGADREWPAGGHGDTRTPKRRTAIDAS--AAEFSQGFKGPRADRFPESFRDPHVNREAG---LEYQLGCKV--SGG--RSNLPTDIAPEGCDAQDPNKQPMLWDSLREALSGLSDKEGV 885
            E+ L  KREDFEK+KELS HMDN+VQRL+T+FP+   E   +     PS       +P   P   +RD  V AR  TM  XXXXXXXXXXXX SVASG +FD++   +T    RH   E +  RR   G  +   +     +R    R  +D    A       +GP A    +        ++     ++  LG K+  SGG  RS  P   A      +D +++ +LWD LRE L G++  + V
Sbjct:   86 ERRLARKREDFEKMKELSTHMDNVVQRLATYFPLDGTEGEPKTDVVPPSAAPELPPLPLPSP-DNARDRYVSARVLTMXXXXXXXXXXXXXXTSVASGLHFDDELSGSTASYGRHGEDEQHAERRGAGGRGQRGTSRRQSQSRADSDRRGMDTDEPAGSRKHEAEGPDAAEHRKGTTSSWSRKDRSASVVDKGLGLKLESSGGEMRSRPPPGRAGANLGFEDSHER-LLWDELRETLEGVAGSDAV 329
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BLAST of mRNA_H-paniculata_contig454.11401.1 vs. uniprot
Match: A0A6H5KZ75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ75_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.150e-14
Identity = 97/294 (32.99%), Postives = 130/294 (44.22%), Query Frame = 1 
Query:  205 LESKREDFEKLKELSVHMDNIVQRLSTFFPVADDEEGQEEQHSSPSVXXXXXXVPPEQPLRESRDTAVWARARTMDRXXXXXXXXXXXXXSVASGRYFDED----SLDTTRHEHNVVRRAPSGADREWPAGGHGDTRTPKRRTAIDAS---------AAEFSQGFKGPRADRFPESFRDPHVNREA-------GLEYQLGCKVSGGRSNLPTDIAPEGCDAQDPNK---------QPMLWDSLREALSGLSDKEGVLGRGTIGRPFGGAGLRGEDISCEEDRRR----LIEQAI 987
            L  KREDFEK+KELS HMDN+VQRL+T+FP  DD EG+      P          P  P   +R   V AR  TMDR XXXXXXXXXXXXSVASG +FD++    +   +RH  +  R    G+      GG G   T +R++  D++                 +GP      +        ++        GL  +L     G RS  P   A      +D +          + +LWD LRE+L G++  + V        P  G G   E    E  R      LI++AI
Sbjct:   89 LARKREDFEKMKELSAHMDNVVQRLATYFP-PDDTEGEPNTDVVPPSAAPELPPLPLPPPDNARGRYVSARVLTMDRAXXXXXXXXXXXXSVASGLHFDDELSASTASNSRHGEDEQRAKRRGS------GGRGQRGTSRRQSRADSNRRGMDTDEPVGSRKHEAEGPDTAEHRKRTTSNWSRKDTSASVVGKGLGLKLESSGGGRRSRSPPGRAGANLGFEDSHXXXXXXXXXXERLLWDELRESLEGVAGSDAVP-------PAWGHGAAAEKARAERAREXXXXXLIDEAI 368
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig454.11401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRH5_ECTSI5.940e-1536.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ75_9PHAE1.150e-1432.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig454contigH-paniculata_contig454:519..2664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_004540.1
Exons3
Model size1010
Cds size1008
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig454.11401.1prot_H-paniculata_contig454.11401.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig454 519..2664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930361.0782115-CDS-H-paniculata_contig454:518..7131622930361.0782115-CDS-H-paniculata_contig454:518..713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig454 519..713 +
1691481257.4459364-CDS-H-paniculata_contig454:518..7131691481257.4459364-CDS-H-paniculata_contig454:518..713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig454 519..713 +
1622930361.1104813-CDS-H-paniculata_contig454:1364..16831622930361.1104813-CDS-H-paniculata_contig454:1364..1683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig454 1365..1683 +
1691481257.458494-CDS-H-paniculata_contig454:1364..16831691481257.458494-CDS-H-paniculata_contig454:1364..1683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig454 1365..1683 +
1622930361.1495519-CDS-H-paniculata_contig454:2170..26641622930361.1495519-CDS-H-paniculata_contig454:2170..2664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig454 2171..2664 +
1691481257.4701667-CDS-H-paniculata_contig454:2170..26641691481257.4701667-CDS-H-paniculata_contig454:2170..2664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig454 2171..2664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig454.11401.1

>prot_H-paniculata_contig454.11401.1 ID=prot_H-paniculata_contig454.11401.1|Name=mRNA_H-paniculata_contig454.11401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=336bp
ESSDNEQSTEESSGEDTGNDETNSDTDSETSNSDDGTDGSERDSDSSSAG
ENDTSDGEDSKDESEEKSLESKREDFEKLKELSVHMDNIVQRLSTFFPVA
DDEEGQEEQHSSPSVPQLPPVVPPEQPLRESRDTAVWARARTMDRAVSAR
QLTTDTAVSVASGRYFDEDSLDTTRHEHNVVRRAPSGADREWPAGGHGDT
RTPKRRTAIDASAAEFSQGFKGPRADRFPESFRDPHVNREAGLEYQLGCK
VSGGRSNLPTDIAPEGCDAQDPNKQPMLWDSLREALSGLSDKEGVLGRGT
IGRPFGGAGLRGEDISCEEDRRRLIEQAIAVLLEDS
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mRNA from alignment at H-paniculata_contig454:519..2664+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig454.11401.1 ID=mRNA_H-paniculata_contig454.11401.1|Name=mRNA_H-paniculata_contig454.11401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2146bp|location=Sequence derived from alignment at H-paniculata_contig454:519..2664+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGCTCGGATAACGAACAGTCCACAGAAGAAAGCTCCGGCGAAGATAC
CGGCAACGACGAAACGAACTCTGATACCGATAGTGAAACCTCTAATAGCG
ATGATGGCACTGATGGATCAGAACGAGATAGCGACAGCTCTTCGGCAGGA
GAAAACGATACTTCCGATGGTGAAGATAGCAAGGACGAATCGGAGGTTAG
CCAATGAAAAGTGCAAGATTATGCATGATTCCAGTTTGCTTGGTTCGATT
TACTTGGTGTAACGGCAATATTGTGCAATATTGTGCAATATTGTGCGAAA
CATGTTGTACTCCTTGTGTCCACCATGGTATTTTGGTGGCGTAGACCCCG
GATACTCAACGAAATTGATCAAGTAACAGTAATATCTGATATTACCATTC
AGGAACACTTGACATGATTCAATTTCAGCTGAAAATTTTGTCTAGCGTTG
CACAGGTTGCAAGACCCGTTTATCATGTGTAGTCCCCGTTTGAACGTGGT
CACAGCTACTTTCAAGGATGATACTAACGGTGAACTCGTTACGCATAACT
CTACAGCAAGTCCGACGTAGGCCCTAGAGAGAAAAGGGCTAGCACTGCTG
CGTGCTTTGTAACAGAATTGGTCGCCACGTGTCAACGGAGAACCGTTTAG
AGATCATAGCGTCTTTAAAATTCGGCACGTCGTTTACCGATAGTAATCGC
TGACGTCACCTGTCCCACAACAGAAAGCTAAGGGGAATTTTCCGACTAAG
TGAAGAGATGCAATTGGCATATATGTAAGGGTTTCTCTGGTACCTCATGA
ATTCACTTTCGCGTATCACTACAATCAAATGCATTGCCATAACCAGGAGA
AAAGTCTGGAAAGTAAGCGAGAGGACTTCGAAAAGCTGAAAGAGCTCTCG
GTTCACATGGACAACATCGTGCAACGGCTGTCAACTTTTTTTCCGGTCGC
TGATGACGAGGAGGGGCAGGAGGAGCAGCATTCGTCTCCTTCCGTGCCGC
AGCTACCACCGGTTGTACCTCCAGAACAGCCCCTTCGGGAGTCTAGAGAT
ACAGCGGTGTGGGCGCGAGCGAGAACGATGGACCGAGCGGTATCTGCTCG
GCAACTTACAACAGACACCGCGGTTTCTGTTGCCAGCGGGCGGTATTTCG
ACGAGGATTCGCTAGGTAGGCCAATCTATAAGCTGGATATATTTTTTTGT
TGACAATCAGTGTTCATCTCTGATACTGTGTTCATTCGTAGTAGTCGCGT
GTGGATGTTAGCCTTTTGTGCAGAATTTGTTATTTGTCTATGGACCTGCC
TTCAAACAGTATCCACGTGGACTATTTACCGATCTCGCGCCCCTCGTATT
GGGAAACGCGTAATATGACATGTGTGGATGCAGAACACTTCTAGCCAGTA
AATAACACATTCTTGCGAGCCGAAAGTAAAACTTGATATCAAACGTCTCA
CGCACCACCTCTCCCCAGTCCACCCGTGAGAACCTGCACACGACTTCGGG
AAAAGCACACGCGTTCTCAAAACCCGAATCGCTGATATGACTCCATGACT
TGTCCCACTTGTTTCCACCCCGCTTTTCTGTTCGTCGTTGATATGGCATC
CCATTAGACACCATGGATTCAAGGCCTCAAAACAGGGAGAAGACACGGGA
AGATACCACACGCCACGAGCACAACGTTGTCCGAAGAGCTCCCAGCGGGG
CTGACCGGGAATGGCCAGCCGGCGGTCATGGAGACACCAGAACCCCGAAG
AGGAGAACGGCAATAGACGCGTCGGCCGCGGAATTCTCGCAAGGGTTCAA
AGGACCAAGAGCGGATAGATTCCCCGAGAGTTTCCGAGATCCTCACGTAA
ACAGAGAGGCAGGCTTAGAATATCAACTGGGATGTAAAGTGTCTGGGGGC
CGATCGAACTTGCCGACAGACATTGCGCCTGAAGGTTGTGATGCTCAAGA
CCCAAATAAACAACCCATGCTATGGGACAGCCTTCGAGAAGCATTGTCGG
GATTGAGTGACAAGGAAGGCGTGCTGGGTCGCGGGACTATTGGACGTCCC
TTCGGGGGGGCGGGGTTACGAGGCGAAGATATTAGTTGCGAGGAAGATCG
ACGGCGACTTATTGAACAAGCAATCGCGGTCTTGCTCGAGGATAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig454:519..2664+

>mRNA_H-paniculata_contig454.11401.1 ID=mRNA_H-paniculata_contig454.11401.1|Name=mRNA_H-paniculata_contig454.11401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2016bp|location=Sequence derived from alignment at H-paniculata_contig454:519..2664+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGCTCGGATAACGAACAGTCCACAGAAGAAAGCTCCGGCGAAGATAC
CGGCAACGACGAAACGAACTCTGATACCGATAGTGAAACCTCTAATAGCG
ATGATGGCACTGATGGATCAGAACGAGATAGCGACAGCTCTTCGGCAGGA
GAAAACGATACTTCCGATGGTGAAGATAGCAAGGACGAATCGGAGGAGAG
CTCGGATAACGAACAGTCCACAGAAGAAAGCTCCGGCGAAGATACCGGCA
ACGACGAAACGAACTCTGATACCGATAGTGAAACCTCTAATAGCGATGAT
GGCACTGATGGATCAGAACGAGATAGCGACAGCTCTTCGGCAGGAGAAAA
CGATACTTCCGATGGTGAAGATAGCAAGGACGAATCGGAGGAGAAAAGTC
TGGAAAGTAAGCGAGAGGACTTCGAAAAGCTGAAAGAGCTCTCGGTTCAC
ATGGACAACATCGTGCAACGGCTGTCAACTTTTTTTCCGGTCGCTGATGA
CGAGGAGGGGCAGGAGGAGCAGCATTCGTCTCCTTCCGTGCCGCAGCTAC
CACCGGTTGTACCTCCAGAACAGCCCCTTCGGGAGTCTAGAGATACAGCG
GTGTGGGCGCGAGCGAGAACGATGGACCGAGCGGTATCTGCTCGGCAACT
TACAACAGACACCGCGGTTTCTGTTGCCAGCGGGCGGTATTTCGACGAGG
ATTCGCTAGGAGAAAAGTCTGGAAAGTAAGCGAGAGGACTTCGAAAAGCT
GAAAGAGCTCTCGGTTCACATGGACAACATCGTGCAACGGCTGTCAACTT
TTTTTCCGGTCGCTGATGACGAGGAGGGGCAGGAGGAGCAGCATTCGTCT
CCTTCCGTGCCGCAGCTACCACCGGTTGTACCTCCAGAACAGCCCCTTCG
GGAGTCTAGAGATACAGCGGTGTGGGCGCGAGCGAGAACGATGGACCGAG
CGGTATCTGCTCGGCAACTTACAACAGACACCGCGGTTTCTGTTGCCAGC
GGGCGGTATTTCGACGAGGATTCGCTAGATACCACACGCCACGAGCACAA
CGTTGTCCGAAGAGCTCCCAGCGGGGCTGACCGGGAATGGCCAGCCGGCG
GTCATGGAGACACCAGAACCCCGAAGAGGAGAACGGCAATAGACGCGTCG
GCCGCGGAATTCTCGCAAGGGTTCAAAGGACCAAGAGCGGATAGATTCCC
CGAGAGTTTCCGAGATCCTCACGTAAACAGAGAGGCAGGCTTAGAATATC
AACTGGGATGTAAAGTGTCTGGGGGCCGATCGAACTTGCCGACAGACATT
GCGCCTGAAGGTTGTGATGCTCAAGACCCAAATAAACAACCCATGCTATG
GGACAGCCTTCGAGAAGCATTGTCGGGATTGAGTGACAAGGAAGGCGTGC
TGGGTCGCGGGACTATTGGACGTCCCTTCGGGGGGGCGGGGTTACGAGGC
GAAGATATTAGTTGCGAGGAAGATCGACGGCGACTTATTGAACAAGCAAT
CGCGGTCTTGCTCGAGGATAGTATACCACACGCCACGAGCACAACGTTGT
CCGAAGAGCTCCCAGCGGGGCTGACCGGGAATGGCCAGCCGGCGGTCATG
GAGACACCAGAACCCCGAAGAGGAGAACGGCAATAGACGCGTCGGCCGCG
GAATTCTCGCAAGGGTTCAAAGGACCAAGAGCGGATAGATTCCCCGAGAG
TTTCCGAGATCCTCACGTAAACAGAGAGGCAGGCTTAGAATATCAACTGG
GATGTAAAGTGTCTGGGGGCCGATCGAACTTGCCGACAGACATTGCGCCT
GAAGGTTGTGATGCTCAAGACCCAAATAAACAACCCATGCTATGGGACAG
CCTTCGAGAAGCATTGTCGGGATTGAGTGACAAGGAAGGCGTGCTGGGTC
GCGGGACTATTGGACGTCCCTTCGGGGGGGCGGGGTTACGAGGCGAAGAT
ATTAGTTGCGAGGAAGATCGACGGCGACTTATTGAACAAGCAATCGCGGT
CTTGCTCGAGGATAGT
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