mRNA_H-paniculata_contig45318.11390.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45318.11390.1
Unique NamemRNA_H-paniculata_contig45318.11390.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45318.11390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45318contigH-paniculata_contig45318:270..620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size352
Cds size351
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930359.8637855-CDS-H-paniculata_contig45318:269..6201622930359.8637855-CDS-H-paniculata_contig45318:269..620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45318 270..620 +
1691481256.910926-CDS-H-paniculata_contig45318:269..6201691481256.910926-CDS-H-paniculata_contig45318:269..620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45318 270..620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45318.11390.1prot_H-paniculata_contig45318.11390.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45318 270..620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45318.11390.1

>prot_H-paniculata_contig45318.11390.1 ID=prot_H-paniculata_contig45318.11390.1|Name=mRNA_H-paniculata_contig45318.11390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MSTYSAGGTVLALSYDCARCTARAPVPDMLRNLALASSAGSIPPNGSSGP
SGLPVGGGLLSSEGKVVILVLWTRWPTFPCSRREILPGALCPPRTSIFGV
GSDPSSLRPPWAHATSP
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mRNA from alignment at H-paniculata_contig45318:270..620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45318.11390.1 ID=mRNA_H-paniculata_contig45318.11390.1|Name=mRNA_H-paniculata_contig45318.11390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig45318:270..620+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCACGTACTCTGCTGGAGGTACGGTCCTGGCGTTGTCGTATGACTG
TGCCCGTTGCACCGCCAGAGCTCCAGTTCCCGACATGCTGCGGAATCTCG
CTTTAGCCTCGTCGGCCGGTTCGATCCCTCCGAACGGGTCATCAGGGCCA
AGTGGCCTACCGGTCGGGGGTGGGTTATTAAGCAGCGAGGGCAAGGTCGT
TATCTTGGTCTTGTGGACCAGATGGCCGACCTTCCCTTGCAGCCGACGAG
AGATCCTCCCCGGCGCGTTGTGCCCTCCTAGAACATCTATATTCGGTGTA
GGCAGCGATCCGTCTTCGCTCCGTCCTCCGTGGGCCCACGCGACCAGCCC
G
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Coding sequence (CDS) from alignment at H-paniculata_contig45318:270..620+

>mRNA_H-paniculata_contig45318.11390.1 ID=mRNA_H-paniculata_contig45318.11390.1|Name=mRNA_H-paniculata_contig45318.11390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig45318:270..620+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCACGTACTCTGCTGGAGGTACGGTCCTGGCGTTGTCGTATGACTG
TGCCCGTTGCACCGCCAGAGCTCCAGTTCCCGACATGCTGCGGAATCTCG
CTTTAGCCTCGTCGGCCGGTTCGATCCCTCCGAACGGGTCATCAGGGCCA
AGTGGCCTACCGGTCGGGGGTGGGTTATTAAGCAGCGAGGGCAAGGTCGT
TATCTTGGTCTTGTGGACCAGATGGCCGACCTTCCCTTGCAGCCGACGAG
AGATCCTCCCCGGCGCGTTGTGCCCTCCTAGAACATCTATATTCGGTGTA
GGCAGCGATCCGTCTTCGCTCCGTCCTCCGTGGGCCCACGCGACCAGCCC
GATGAGCACGTACTCTGCTGGAGGTACGGTCCTGGCGTTGTCGTATGACT
GTGCCCGTTGCACCGCCAGAGCTCCAGTTCCCGACATGCTGCGGAATCTC
GCTTTAGCCTCGTCGGCCGGTTCGATCCCTCCGAACGGGTCATCAGGGCC
AAGTGGCCTACCGGTCGGGGGTGGGTTATTAAGCAGCGAGGGCAAGGTCG
TTATCTTGGTCTTGTGGACCAGATGGCCGACCTTCCCTTGCAGCCGACGA
GAGATCCTCCCCGGCGCGTTGTGCCCTCCTAGAACATCTATATTCGGTGT
AGGCAGCGATCCGTCTTCGCTCCGTCCTCCGTGGGCCCACGCGACCAGCC
CG
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