mRNA_H-paniculata_contig4529.11382.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4529.11382.1
Unique NamemRNA_H-paniculata_contig4529.11382.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4529.11382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4529contigH-paniculata_contig4529:5075..8186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size218
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930358.1137028-CDS-H-paniculata_contig4529:5075..51181622930358.1137028-CDS-H-paniculata_contig4529:5075..5118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4529 5076..5118 -
1691481256.3729856-CDS-H-paniculata_contig4529:5075..51181691481256.3729856-CDS-H-paniculata_contig4529:5075..5118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4529 5076..5118 -
1622930358.130286-CDS-H-paniculata_contig4529:8013..81861622930358.130286-CDS-H-paniculata_contig4529:8013..8186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4529 8014..8186 -
1691481256.387484-CDS-H-paniculata_contig4529:8013..81861691481256.387484-CDS-H-paniculata_contig4529:8013..8186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4529 8014..8186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4529.11382.1prot_H-paniculata_contig4529.11382.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4529 5076..8186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4529.11382.1

>prot_H-paniculata_contig4529.11382.1 ID=prot_H-paniculata_contig4529.11382.1|Name=mRNA_H-paniculata_contig4529.11382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
LKSYLLSSTAVPFVPEFFGISHRPCSRSNTHTTSHGSNQSSSFRPGCLVL
RGHERCCGIEGLRPPQAPTRRP
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mRNA from alignment at H-paniculata_contig4529:5075..8186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4529.11382.1 ID=mRNA_H-paniculata_contig4529.11382.1|Name=mRNA_H-paniculata_contig4529.11382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3112bp|location=Sequence derived from alignment at H-paniculata_contig4529:5075..8186- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAAATCATATCTTCTGAGCAGTACTGCAGTCCCCTTCGTTCCTGAATT
CTTCGGTATAAGTCATCGCCCTTGTTCACGAAGCAACACACATACCACCA
GCCATGGTTCGAACCAAAGCAGCAGCTTCCGTCCTGGTTGCCTTGTTCTG
CGAGGTCACGAACGTTGTTGCGGGTGAGTTAATGTATGCATGGTTTACGT
GAGAGTTCGTGAAATATTGATGTCTGTTGTGCACATCGTCGACCTACACA
AGTATGGCATAAGAAGTAGTATCATAAATGTGTGTGTTTGTGTGTTTGTG
TGTTGAAGGCACTGGAAAGCGTGTCCAACCAACGCAGAAAAAAGCACGAG
CGATTATATTAGACCGCCTTGTGGGCAACCAGGCCTGATAGAGTGAGATA
TGGGCGATATATCGAGCCCATTCAGGCGTTCCGTGTGTGCAACGGATATA
TTCCTGTGTTCACCGCAGCCATGTGCAGGGCGTGATGACTTGATGGAATG
AGATTTGTTTCTCCAAAGTTTGGGTTTTTGGCTCCTCTTGCCGCTTCTCT
AGGGCAGTCAGTTGTATCAGACTCATTTCCTTCTTTACCGCTTTCTTGCG
TTTGCGTTGGCCGTTGACCAGACGCATTTGACGCCACCGCGAGTATGTTG
CCACAGACTCGATCACGCATGGAGTGGTTGACCTTATCCGTCCAGCTCGA
ACTTCAAGTTTCTGCATCATAAAATTATGCCACCTTTTTGGAGGATGATT
TCCCATCTGAGAAAACCATTTCATGTTGGTCTCGCTTCTCCACCTTAGGC
ATCTCGAGATTTGCGTGTTGTCGATTAGAGCCCACATGCTTCTTTTCTTT
ACAGCAGGCGCAGGAAAGGAAATTATTGCGTGGTGTATAATATAGTCGAC
TTTTGGTGTATATGAGATAATAAGTCGTCACGCATTTTCCATCGTCCTCT
CCAGATGACGGCACAAGTGTTCATTCGACATTGTGAAGAGGCTCCTATAC
CTCTCCGTTATGTCGTTAACACGTAGACTATTGGTTATAGTTATCCTCTA
AGACTCACGTTTATTAGCTCTCCCAGTTCTCTATGAAGCCAAACCCAAAC
GTTTGCGTAGCAGTGATCACCCAGGGGGGGGCGATCATGTTTACGCAGGG
ACTACAGCTACATCCTATAGTTCCTGCGTGAACCACAGCATCCTTTTCTC
AAACCCACAATCATCCCAATCGATACAAAACCAAGTGGAGCCGTTAGAAA
CATACATGCTGGTTATGGTCGAACCGGCACAATATTTCAGTAACACATGC
TATGAGGTATGTTGTCTTCCTACTCTAGCTGCTACCGTCTCTATGCTTCC
ATTAACAAAGATTGAGTAATCGTGGATCTGGATTGATATCTTGACCGTTA
GGATATATGTTGGATCATCACGGGTCAGGTGTGCGAATACTAGAAAAAGG
CGTTTGGTGTAAGAAAGCAAGAGTAAGTCGATGACTACTACATACGATTG
ATCACTCGGCAAAAAGCTATCTCTGCGTCTTCTCTCAATTGCGTTCTCAC
ACAACCTCATATCCTGCGGCCATGCTGTGAGCTTGTTGGTATTGTATACC
TGGCGTCTGGCTAGTCCCACCCCAACAAGTACCGTTGTATTAATTAGAGC
CAAATCATCTAATAAATGTAGTTGGAGGCGCTCCTGAGAATAATGCTGAA
CAATTTCATCAGAATCTGTGGCGGTGGGGTTGACTGTCGGTAGCTAACGG
CGATCGCGTGAGTGTATTTTGTATACTATTTTGAACTCATTTGATTTTCT
CGGAAACGACAGAGCCTCAAGGTCGACAATATGGGTGTATCCGCTTTAGG
ATACCAGTTAGAGGCGACGAAGGCTGGCGTAGGCTCCGTGAGGCAGCCAA
ACGTAGGGACGGCTGGGAAGCTGGGATGCAGTGTCTACCACTTGAGATAA
AATATATTGAATTTCTGTATGCCTTTTATTAATTAGGACGTAAGAAGAAA
CAAAACACACCCGCTAACTGCTGACATCATGGTGACTGTTGTGAGCGAGT
GATTGAGGTGAGTCAGCCACACTCGATTGATCCAGGACAAGCACCCGGAT
AATTGCTTGGAAGCGGAAGGAATAAACACCAGCAAACTCCCGTTTCAAAT
TCCCGGTAGTATTGTTTAGTCGAACGGGCACTACCTGGTCAGCTTTTTCG
CTGTGACTGACATTGTTACAAACTGTACTTCCAACAACTTACTCTGCTGT
ATTTTCCGCAGTAGTATCATGCTACTGAGCACTGTCTAGACAGGCGAGTA
AACTCTTATCTCACGTTGTAGATACGCTGCGCGCTTGTTCGTCTTCGTTG
GTACAGGGGTACGGACACGCTTACCCGCGTGGGTGTAATAGCTCATACTA
ACATGGTAAATAGTGACCTGATGAAGGTGTTACACCTATATATGTCAGTG
TGTCCCAGTCCGTGTCTTTCTCGCGTGTACGTCGGCCTGTAGCTGTGAGG
CAGCCCGCAGACCCTGTCATCCACCAGTTGTAGCAAGCATTACCTGTCCG
GCTCTCTTTCTTACGGTGGTCCCACCTCGTCAATAGACCTTCGCGCCTTA
CTTACGTCACGTGTTTTGTGTTTGCCACCGTGCCCATATGGCCTCGCTTT
TCTTTGCCATCACGTCCTACCCCTCGTCCCCCCTCCTTCCCATCCCACGA
AACGCCCTTCTCAACATCTGCACCCTTTTCGCTGTCTACCCACACAGTAT
TGTTCAGACACTTGAGAGCTTTTCATACACCCGGTGGGTCAAAACCCTTG
ACTGACCACAACGTCGACACGCCGTACTGCATACCGTAATGGATAGTCAC
CCCGTTGTTTCTACAGTAGATCAACGTCTCCTTCTCACGCATTCTTTGCT
ATCACATCTCTTCAATCTACTCCCAGTTTTTAATATGCCTCTAACGTCGC
ACAACCTTCGTCACTTTCTTTTTCTGACTGATCGGTGGGGCCGGGGTTTT
CCTAGTAGGAGCCTCAATTGTCGCCCTATCACCCTCCATTTGCATGCGCG
CTGTTCGCCAACTTGCAGGATCGAAGGGCTCCGGCCTCCGCAGGCACCTA
CAAGACGGCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4529:5075..8186-

>mRNA_H-paniculata_contig4529.11382.1 ID=mRNA_H-paniculata_contig4529.11382.1|Name=mRNA_H-paniculata_contig4529.11382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig4529:5075..8186- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAAATCATATCTTCTGAGCAGTACTGCAGTCCCCTTCGTTCCTGAATT
CTTCGGTATAAGTCATCGCCCTTGTTCACGAAGCAACACACATACCACCA
GCCATGGTTCGAACCAAAGCAGCAGCTTCCGTCCTGGTTGCCTTGTTCTG
CGAGGTCACGAACGTTGTTGCGGCTGAAATCATATCTTCTGAGCAGTACT
GCAGTCCCCTTCGTTCCTGAATTCTTCGGTATAAGTCATCGCCCTTGTTC
ACGAAGCAACACACATACCACCAGCCATGGTTCGAACCAAAGCAGCAGCT
TCCGTCCTGGTTGCCTTGTTCTGCGAGGTCACGAACGTTGTTGCGGGATC
GAAGGGCTCCGGCCTCCGCAGGCACCTACAAGACGGCCCGATCGAAGGGC
TCCGGCCTCCGCAGGCACCTACAAGACGGCCC
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