mRNA_H-paniculata_contig4529.11381.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4529.11381.1
Unique NamemRNA_H-paniculata_contig4529.11381.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4529.11381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4529contigH-paniculata_contig4529:3734..5116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size443
Cds size414
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4529.11381.1prot_H-paniculata_contig4529.11381.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4529 3734..5089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930358.0174506-CDS-H-paniculata_contig4529:3733..39311622930358.0174506-CDS-H-paniculata_contig4529:3733..3931Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4529 3734..3931 +
1691481256.320844-CDS-H-paniculata_contig4529:3733..39311691481256.320844-CDS-H-paniculata_contig4529:3733..3931Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4529 3734..3931 +
1622930358.0338197-CDS-H-paniculata_contig4529:4579..47701622930358.0338197-CDS-H-paniculata_contig4529:4579..4770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4529 4580..4770 +
1691481256.338633-CDS-H-paniculata_contig4529:4579..47701691481256.338633-CDS-H-paniculata_contig4529:4579..4770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4529 4580..4770 +
1622930358.0521567-CDS-H-paniculata_contig4529:5064..50891622930358.0521567-CDS-H-paniculata_contig4529:5064..5089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4529 5065..5089 +
1691481256.3512955-CDS-H-paniculata_contig4529:5064..50891691481256.3512955-CDS-H-paniculata_contig4529:5064..5089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4529 5065..5089 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930358.0707984-UTR-H-paniculata_contig4529:5089..51161622930358.0707984-UTR-H-paniculata_contig4529:5089..5116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4529 5090..5116 +
1691481256.3614185-UTR-H-paniculata_contig4529:5089..51161691481256.3614185-UTR-H-paniculata_contig4529:5089..5116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4529 5090..5116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4529.11381.1

>prot_H-paniculata_contig4529.11381.1 ID=prot_H-paniculata_contig4529.11381.1|Name=mRNA_H-paniculata_contig4529.11381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
SIVVHTAELFGASGGRALGVGLFGVRNEAIRAAEAPAECITALLHRADIV
VAFSALGVRDGDEAVRHRSTSQPLSGHRIPPASTTDVNPFGQAKKEQKEL
QHCSNEQGSSSHTVFWASGMGIKLFGHPMDSSYRAVL*
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mRNA from alignment at H-paniculata_contig4529:3734..5116+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4529.11381.1 ID=mRNA_H-paniculata_contig4529.11381.1|Name=mRNA_H-paniculata_contig4529.11381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1383bp|location=Sequence derived from alignment at H-paniculata_contig4529:3734..5116+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCATCGTTGTCCACACAGCAGAGCTCTTCGGTGCATCCGGAGGAAGGGC
ACTCGGTGTTGGTCTCTTCGGGGTCCGGAACGAAGCCATTCGGGCAGCCG
AAGCCCCAGCAGAATGCATCACAGCACTGCTCCACAGAGCAGATATCGTT
GTCGCATTCAGTGCTTTGGGCGTCCGGGATGGGGATGAAGCCGTTCGGGC
AGCCGATGGAATTGCACAGGATAAGGGCTGATCGATTGGGCGCACGAAAA
CAGGCAGCCGCGCGGGGCCGTAGAATGGGAAACAGGTCCGCGCGATCATG
AAATTGTGATTGATATCGGTGCGCGGTTTTTCGGGGCACGGACTCGCGCT
GAACAAGGCGCGAGAGTGAACACGCTCTCCACATATGCACGACTCTTGTA
CGGGGTTGAAGAACACTTCGATTGTCAAGTTCAAAACTGCGTATAACAGC
CGCTCATGAAAAATGGGAACCAACGTTTTCGATGAGAACGAACTCCCATT
GGATTTCTAGATTATACTCGAAAATGGTGCGACCTGGTGGTATACGCAAG
GCTGACCATTTCGAATATAATATGAAAATTCAATGGGACTTCATTCCCAT
CGAAAGAAATGGTTCCCCTTTTTCATCAGCGATTTCAGTGTGCTCACGGG
AGGAGCACCTGGGCACGGATCAATTTGGGCCGAAACGTCTCCTACCGGCA
GCTTATCAAACACCCACCGTTGCCGGCAGCGAAGCACACGATGCTGAGTC
ACTGCAAAAAACCATCCGTTCGTTTCGAACGTTGCAACTACGGTAACAAA
CCCTCGACTCCACGGAAGGAGTATGTGGTACTCACGTGCATCACAGCACA
GGTCCACATCACAACCACTGTCCGGGCACAGAATCCCTCCGGCGTCAACC
ACGGACGTGAATCCATTTGGGCAGGCGAAGAAGGAGCAGAAAGAATTGCA
GCATTGCTCGAACGAACAGGGATCATCGTCGCATACAGTGTTCTGGGCAT
CGGGGATGGGGATAAAATTGTTCGGGCATCCGATGGAGTTGCACAACTGG
AAGATGGGAACAAACGCACGTAGAGAGAAAATAGGGCGCGCAGAAAACGG
GGGGAGGTTGGGATAATTTTGTCGGATTACGTGATTCGTAGCAACTAAGC
TGACTGCACACATTCCTGGGAAATATCGAGGTGAAAGGTGCTACTCCCCC
CCCCACGTCGGACACGGTGGTTGTGCTACCGAGCCGCTACGACTCGCTGC
AGAGGTTCCCATGTTCACGAGAACACAACACCAATAATCACCCAAAGTTC
CGAATGTGTACGCTTTGTCACCCCGAGATAGCTCGTCTTACCGGGCCGTC
TTGTAGGTGCCTGCGGAGGCCGGAGCCCTTCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4529:3734..5116+

>mRNA_H-paniculata_contig4529.11381.1 ID=mRNA_H-paniculata_contig4529.11381.1|Name=mRNA_H-paniculata_contig4529.11381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig4529:3734..5116+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCATCGTTGTCCACACAGCAGAGCTCTTCGGTGCATCCGGAGGAAGGGC
ACTCGGTGTTGGTCTCTTCGGGGTCCGGAACGAAGCCATTCGGGCAGCCG
AAGCCCCAGCAGAATGCATCACAGCACTGCTCCACAGAGCAGATATCGTT
GTCGCATTCAGTGCTTTGGGCGTCCGGGATGGGGATGAAGCCGTTCGGTC
CATCGTTGTCCACACAGCAGAGCTCTTCGGTGCATCCGGAGGAAGGGCAC
TCGGTGTTGGTCTCTTCGGGGTCCGGAACGAAGCCATTCGGGCAGCCGAA
GCCCCAGCAGAATGCATCACAGCACTGCTCCACAGAGCAGATATCGTTGT
CGCATTCAGTGCTTTGGGCGTCCGGGATGGGGATGAAGCCGTTCGGCACA
GGTCCACATCACAACCACTGTCCGGGCACAGAATCCCTCCGGCGTCAACC
ACGGACGTGAATCCATTTGGGCAGGCGAAGAAGGAGCAGAAAGAATTGCA
GCATTGCTCGAACGAACAGGGATCATCGTCGCATACAGTGTTCTGGGCAT
CGGGGATGGGGATAAAATTGTTCGGGCATCCGATGGACACAGGTCCACAT
CACAACCACTGTCCGGGCACAGAATCCCTCCGGCGTCAACCACGGACGTG
AATCCATTTGGGCAGGCGAAGAAGGAGCAGAAAGAATTGCAGCATTGCTC
GAACGAACAGGGATCATCGTCGCATACAGTGTTCTGGGCATCGGGGATGG
GGATAAAATTGTTCGGGCATCCGATGGACTCGTCTTACCGGGCCGTCTTG
TAGCTCGTCTTACCGGGCCGTCTTGTAG
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