mRNA_H-paniculata_contig45286.11380.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45286.11380.1
Unique NamemRNA_H-paniculata_contig45286.11380.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45286.11380.1 vs. uniprot
Match: D7G2N4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2N4_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.620e-36
Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 DELTTLKLRKLGQQKELADEFNNILTRQGGLNDQAHHTCKNLEYAIAISTQPGDIVYYQQPKEVVHIVENGDLAVLTGKIARLQKDLDQV 270
            DELT LK+RKLGQQ+ELA EFN ILTRQGGLNDQA  TCKNLEYAIAI+T+PG I YY+  +E   IV NG+L VLT KIARLQ+D+DQV
Sbjct:   15 DELTALKVRKLGQQEELAKEFNFILTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELTVLTNKIARLQRDIDQV 104
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BLAST of mRNA_H-paniculata_contig45286.11380.1 vs. uniprot
Match: A0A7S2UW48_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW48_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.450e-22
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    1 DELTTLKLRKLGQQKELADEFNNILTRQGGLNDQAHHTCKNLEYAIAISTQPGDIVYYQQPKEVVHIVENGDLAVLTGKIARLQKDLDQV 270
            ++L   K  KL QQK L+DEFN ILTR+GGLN+ +   CKNLE A+A++ +PG   YYQ P EV  I+   DL +LT KI ++Q++LDQ+
Sbjct:   24 EQLYEQKASKLAQQKNLSDEFNEILTREGGLNEVSRQACKNLEAAVAVAQRPGYFEYYQAPAEVQRIIAADDLKLLTNKINQIQRELDQI 113
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BLAST of mRNA_H-paniculata_contig45286.11380.1 vs. uniprot
Match: A0A7S2FSZ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSZ0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.960e-12
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   19 KLRKLGQQKELADEFNNILTRQG--GLNDQAHHTCKNLEYAIAISTQPGDIVYYQQPKEVVHIVENGDLAVLTGKIARLQKDLDQV 270
            K+ KL +QK +ADE N +LTR G  GLN+ +  T KNLE A+ +S +PG   YY+   EV  I +NG++  L  K+ RL  ++ Q+
Sbjct:   10 KMAKLKEQKRVADEINELLTRPGEDGLNESSRKTMKNLEVAVVVSKRPGFFEYYKPAPEVEAIQKNGEIQHLVKKLNRLGGEIAQL 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45286.11380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2N4_ECTSI1.620e-3673.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UW48_9STRA2.450e-2251.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2FSZ0_9STRA4.960e-1243.02Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45286contigH-paniculata_contig45286:341..1023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue5.3e-29
Seed eggNOG ortholog2880.D7G2N4
Hectar predicted targeting categoryother localisation
EggNOG OGs2C2XI@1,2S2SM@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_002870.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930357.948054-CDS-H-paniculata_contig45286:340..5771622930357.948054-CDS-H-paniculata_contig45286:340..577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45286 341..577 -
1691481256.2890973-CDS-H-paniculata_contig45286:340..5771691481256.2890973-CDS-H-paniculata_contig45286:340..577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45286 341..577 -
1622930357.972134-CDS-H-paniculata_contig45286:939..10231622930357.972134-CDS-H-paniculata_contig45286:939..1023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45286 940..1023 -
1691481256.3016298-CDS-H-paniculata_contig45286:939..10231691481256.3016298-CDS-H-paniculata_contig45286:939..1023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45286 940..1023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45286.11380.1prot_H-paniculata_contig45286.11380.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45286 341..1023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45286.11380.1

>prot_H-paniculata_contig45286.11380.1 ID=prot_H-paniculata_contig45286.11380.1|Name=mRNA_H-paniculata_contig45286.11380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
DELTTLKLRKLGQQKELADEFNNILTRQGGLNDQAHHTCKNLEYAIAIST
QPGDIVYYQQPKEVVHIVENGDLAVLTGKIARLQKDLDQVRVSDNARTTK
GALVLC*
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mRNA from alignment at H-paniculata_contig45286:341..1023-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45286.11380.1 ID=mRNA_H-paniculata_contig45286.11380.1|Name=mRNA_H-paniculata_contig45286.11380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=683bp|location=Sequence derived from alignment at H-paniculata_contig45286:341..1023- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGAGCTAACGACGCTCAAGCTACGAAAACTAGGGCAACAAAAGGAGCT
CGCCGACGAGTTCAACAATATTCTTACGCGCCAGGTATATGCGAACCAGA
AATGAAAGTGTGGAGATGGGAAGCCTCGCTCGCTGGTCAGCAGCATTGTT
GACTGATGGTTGGGTCCGTCGACTCTTGTGTGCATAAATAGAACGCAGAA
CAGCGTAGGTTGACGCGATGACGCGAAGTATCCCGATCACACTTACATGT
GCGAGTGAGTTCTACAAAGTTATCGGCTTTCGCCGAGCAGTCAGTGCAAC
CTGTACCACCATCTGTCAACACGGTAATACCACTGACAAGCCCCATAGAC
AGACGTTATATCTGATATACGACCACCCGAGCATCAAACCGAACCGAACT
ACAGCAATCTACCTAACAAACTGAACATAAAACGTGTCTGCATCAGGGAG
GGCTGAACGACCAGGCACATCACACGTGCAAGAATCTGGAGTATGCTATA
GCCATTTCCACTCAACCCGGGGACATTGTCTACTACCAACAGCCCAAAGA
AGTCGTGCATATCGTAGAAAACGGAGACCTTGCGGTCCTCACCGGCAAAA
TCGCACGACTGCAGAAGGATCTGGACCAGGTGCGGGTGTCAGATAACGCT
CGTACCACTAAGGGGGCATTAGTTTTATGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig45286:341..1023-

>mRNA_H-paniculata_contig45286.11380.1 ID=mRNA_H-paniculata_contig45286.11380.1|Name=mRNA_H-paniculata_contig45286.11380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig45286:341..1023- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGAGCTAACGACGCTCAAGCTACGAAAACTAGGGCAACAAAAGGAGCT
CGCCGACGAGTTCAACAATATTCTTACGCGCCAGGACGAGCTAACGACGC
TCAAGCTACGAAAACTAGGGCAACAAAAGGAGCTCGCCGACGAGTTCAAC
AATATTCTTACGCGCCAGGGAGGGCTGAACGACCAGGCACATCACACGTG
CAAGAATCTGGAGTATGCTATAGCCATTTCCACTCAACCCGGGGACATTG
TCTACTACCAACAGCCCAAAGAAGTCGTGCATATCGTAGAAAACGGAGAC
CTTGCGGTCCTCACCGGCAAAATCGCACGACTGCAGAAGGATCTGGACCA
GGTGCGGGTGTCAGATAACGCTCGTACCACTAAGGGGGCATTAGTTTTAT
GTTGAGGAGGGCTGAACGACCAGGCACATCACACGTGCAAGAATCTGGAG
TATGCTATAGCCATTTCCACTCAACCCGGGGACATTGTCTACTACCAACA
GCCCAAAGAAGTCGTGCATATCGTAGAAAACGGAGACCTTGCGGTCCTCA
CCGGCAAAATCGCACGACTGCAGAAGGATCTGGACCAGGTGCGGGTGTCA
GATAACGCTCGTACCACTAAGGGGGCATTAGTTTTATGTTGA
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