mRNA_H-paniculata_contig4528.11379.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4528.11379.1
Unique NamemRNA_H-paniculata_contig4528.11379.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4528.11379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4528contigH-paniculata_contig4528:9370..11419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size899
Cds size747
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4528.11379.1prot_H-paniculata_contig4528.11379.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4528 9370..11267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930357.664699-CDS-H-paniculata_contig4528:9369..95511622930357.664699-CDS-H-paniculata_contig4528:9369..9551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4528 9370..9551 -
1691481256.1751552-CDS-H-paniculata_contig4528:9369..95511691481256.1751552-CDS-H-paniculata_contig4528:9369..9551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4528 9370..9551 -
1622930357.6832905-CDS-H-paniculata_contig4528:10702..112671622930357.6832905-CDS-H-paniculata_contig4528:10702..11267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4528 10703..11267 -
1691481256.1912003-CDS-H-paniculata_contig4528:10702..112671691481256.1912003-CDS-H-paniculata_contig4528:10702..11267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4528 10703..11267 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930357.7000785-UTR-H-paniculata_contig4528:11267..114191622930357.7000785-UTR-H-paniculata_contig4528:11267..11419Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4528 11268..11419 -
1691481256.2021697-UTR-H-paniculata_contig4528:11267..114191691481256.2021697-UTR-H-paniculata_contig4528:11267..11419Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4528 11268..11419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4528.11379.1

>prot_H-paniculata_contig4528.11379.1 ID=prot_H-paniculata_contig4528.11379.1|Name=mRNA_H-paniculata_contig4528.11379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MATTIDEGNYSSDGVEVLDLTAATPTPHRARHPTSPSTSSRFSHSSVSSP
LTAALAVHSTLNTVNKRQEDAAGFELDYGLSSSDDDFDMRPSRPGINGST
TSTTATNDSKGKGAARSASTCSGYSVIPPRSAKSSASIRAGASSSAPPGS
SMVGDKTGKGKGFAVDCVAVGSEWGDGVVELLSDSDDGGDVTASRLQHEV
ISDGENNDDNDDCQSVDMPQELEAFDSLILASQTSHMSMSQGSVSSPQC
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mRNA from alignment at H-paniculata_contig4528:9370..11419-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4528.11379.1 ID=mRNA_H-paniculata_contig4528.11379.1|Name=mRNA_H-paniculata_contig4528.11379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2050bp|location=Sequence derived from alignment at H-paniculata_contig4528:9370..11419- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGGCTGTTCCATTCGCCGCGATCTCGAGACAGAGTATAGAGTACACAC
ACACAGCTGTTTATCTAACCCAAGTTCAGTCCCATGTCAGGGGGTGGTCA
CTGACTACTACTGTCCCCCAAGGTTTTCGGTGTGGGCACTTCATCGGCGG
TAATGGCAACAACTATTGATGAGGGGAATTACTCGTCTGATGGCGTTGAA
GTGCTGGACCTGACTGCTGCGACTCCAACACCTCACCGAGCACGTCACCC
GACATCACCATCTACATCTAGCCGCTTCTCTCATTCGTCAGTGTCCTCTC
CGCTCACTGCTGCTCTTGCAGTGCATTCTACGCTGAACACGGTGAACAAG
CGACAAGAAGATGCCGCAGGATTCGAATTGGACTATGGGCTCAGCAGTAG
TGACGACGACTTCGACATGCGACCGAGCCGTCCCGGGATCAACGGCAGTA
CCACCAGCACCACCGCCACCAACGACAGTAAGGGCAAGGGGGCAGCCAGA
TCGGCTTCCACTTGTAGTGGCTATTCAGTCATCCCGCCGAGATCAGCGAA
GTCTTCTGCAAGTATCCGCGCCGGTGCTAGTAGTAGTGCTCCTCCAGGTA
GCAGTATGGTAGGCGACAAGACGGGGAAGGGCAAAGGATTTGCGGTGGAT
TGTGTTGCGGTTGGGAGTGAATGGGGCGATGGGGTGGTGGAGCTGCTCAG
CGACTCGGACGATGGCGGTAAGTTCGAGCCAAAAGGAAGGTTGCGCCTAT
TGGTGATTGGCGATCTCTGTGGGTATGGTTGTTGGGCGCACGGCTGACTC
TTTGTTGAACCGTATAACTGCAGGAGAACAGGAAGCTCCACAGCCCCCAA
CGTGGCACTCGTTGCGTTCTACAAAGTTCTACTATGTTGAAAATTCAAAC
TTTGTGGGTGTTGAATGTTCGTGTATCATCAGAGCGCCAACAAGTGCATA
CAGGAGGTTGATGGGAGCGAAGGCCTAAATAGCGAGTACCTGTCAGCGTC
TTAATATGACTCGTGCAGAACCTGCAAGAGTCTACTGCAAACACAAGTAG
CTTACATTCTCCATGTTTTATGGAATACCTTAACACCCTTTGGATATCGC
ACCCCATGATACTACTATTCAAATTCGGGTTTTTTCACAACGACGGTGCT
CATGACACCCATAACGATATCATTGGAAAGATTTCGTTGAGATCTTTCAG
TAGACCTGCTGTTTCGACAGTGCTTGCTACTCGAGGAAATCGGGTTTGGA
AAATTTTATCAGGGTGCGCGATATCAAAAGGTGTCACGGTAATCGGCCGT
CGAGCCTTCGCGGTCTTTCTGTGCGTTTGTGGTTTGCGTTTAGACCACGG
TTGGACATCATAATATATTTTCAGGTGTATATATAAGTCCCAACGTCCCA
ACCCACGCGAATAAAGGTGGAACGGCTCGTGAATCCATAGCGAACGGATA
TCCGTCCTCCGGCCACGAATCATGACACTTATATCGAGGACGCAAGTGTA
CGTAAGCGTGGTACAACATGTGGATTGTACCTGGCAATGGTACGTGCCTT
ATTTTGGGTTTGCAACGACCCATCTATTTATTTGTCTTTGCAGTAACACA
CGTAGCAGAGGATATTTGGTGTTGAGCTTTTTAAGCAAGTAAGAGTGCCC
AGGTGCACGCGGCCAGAAAAAATTGTGTTTGGTATTAGCGATACATTACA
ACAAGAGACTTGATGGTGTTGGATATATTGGAGATGCCGTTTCGTGTTGC
ACATTTTCTCTCACTATTAAATTATATTTCAGAGCACTCATCCACCCAAT
CAACCTTTCCCCCCTTCAAACATGACGCAAACACACACACACACACACAC
ACACAAACACACACACAGGCGATGTAACGGCAAGCCGACTGCAGCATGAA
GTAATAAGCGACGGCGAGAACAACGACGACAACGACGATTGCCAAAGTGT
CGACATGCCGCAGGAACTCGAAGCGTTCGACTCCCTGATACTGGCGTCTC
AAACATCGCATATGTCCATGTCCCAGGGTTCCGTTTCCTCTCCGCAATGC
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Coding sequence (CDS) from alignment at H-paniculata_contig4528:9370..11419-

>mRNA_H-paniculata_contig4528.11379.1 ID=mRNA_H-paniculata_contig4528.11379.1|Name=mRNA_H-paniculata_contig4528.11379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig4528:9370..11419- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAACAACTATTGATGAGGGGAATTACTCGTCTGATGGCGTTGAAGT
GCTGGACCTGACTGCTGCGACTCCAACACCTCACCGAGCACGTCACCCGA
CATCACCATCTACATCTAGCCGCTTCTCTCATTCGTCAGTGTCCTCTCCG
CTCACTGCTGCTCTTGCAGTGCATTCTACGCTGAACACGGTGAACAAGCG
ACAAGAAGATGCCGCAGGATTCGAATTGGACTATGGGCTCAGCAGTAGTG
ACGACGACTTCGACATGCGACCGAGCCGTCCCGGGATCAACGGCAGTACC
ACCAGCACCACCGCCACCAACGACAGTAAGGGCAAGGGGGCAGCCAGATC
GGCTTCCACTTGTAGTGGCTATTCAGTCATCCCGCCGAGATCAGCGAAGT
CTTCTGCAAGTATCCGCGCCGGTGCTAGTAGTAGTGCTCCTCCAGGTAGC
AGTATGGTAGGCGACAAGACGGGGAAGGGCAAAGGATTTGCGGTGGATTG
TGTTGCGGTTGGGAGTGAATGGGGCGATGGGGTGGTGGAGCTGCTCAGCG
ACTCGGACGATGGCGATGGCAACAACTATTGATGAGGGGAATTACTCGTC
TGATGGCGTTGAAGTGCTGGACCTGACTGCTGCGACTCCAACACCTCACC
GAGCACGTCACCCGACATCACCATCTACATCTAGCCGCTTCTCTCATTCG
TCAGTGTCCTCTCCGCTCACTGCTGCTCTTGCAGTGCATTCTACGCTGAA
CACGGTGAACAAGCGACAAGAAGATGCCGCAGGATTCGAATTGGACTATG
GGCTCAGCAGTAGTGACGACGACTTCGACATGCGACCGAGCCGTCCCGGG
ATCAACGGCAGTACCACCAGCACCACCGCCACCAACGACAGTAAGGGCAA
GGGGGCAGCCAGATCGGCTTCCACTTGTAGTGGCTATTCAGTCATCCCGC
CGAGATCAGCGAAGTCTTCTGCAAGTATCCGCGCCGGTGCTAGTAGTAGT
GCTCCTCCAGGTAGCAGTATGGTAGGCGACAAGACGGGGAAGGGCAAAGG
ATTTGCGGTGGATTGTGTTGCGGTTGGGAGTGAATGGGGCGATGGGGTGG
TGGAGCTGCTCAGCGACTCGGACGATGGCGGCGATGTAACGGCAAGCCGA
CTGCAGCATGAAGTAATAAGCGACGGCGAGAACAACGACGACAACGACGA
TTGCCAAAGTGTCGACATGCCGCAGGAACTCGAAGCGTTCGACTCCCTGA
TACTGGCGTCTCAAACATCGCATATGTCCATGTCCCAGGGTTCCGTTTCC
TCTCCGCAATGCGCGATGTAACGGCAAGCCGACTGCAGCATGAAGTAATA
AGCGACGGCGAGAACAACGACGACAACGACGATTGCCAAAGTGTCGACAT
GCCGCAGGAACTCGAAGCGTTCGACTCCCTGATACTGGCGTCTCAAACAT
CGCATATGTCCATGTCCCAGGGTTCCGTTTCCTCTCCGCAATGC
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