mRNA_H-paniculata_contig452.11363.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig452.11363.1
Unique NamemRNA_H-paniculata_contig452.11363.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig452.11363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig452contigH-paniculata_contig452:29241..29820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size581
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930355.673371-CDS-H-paniculata_contig452:29240..298191622930355.673371-CDS-H-paniculata_contig452:29240..29819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig452 29241..29819 +
1691481255.2374356-CDS-H-paniculata_contig452:29240..298191691481255.2374356-CDS-H-paniculata_contig452:29240..29819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig452 29241..29819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig452.11363.1prot_H-paniculata_contig452.11363.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig452 29241..29819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig452.11363.1

>prot_H-paniculata_contig452.11363.1 ID=prot_H-paniculata_contig452.11363.1|Name=mRNA_H-paniculata_contig452.11363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
TGITEGLLTGGAEIAAAQAPAKVVETAAGQEVAMKVMEATKATNTGTAVV
AAPATLEAEDQEEPPAALLVGPSMSLATGRGVEQGKYVIQKAPEGAMVAG
VAKGVMAQVTPTASGTKKKLESTWTPRGGPPAAQRPKGGDERGTGTTSGV
GKATAVTVQEAAMASARKAAAAETENDASAETDTARAEAEVAA
back to top

mRNA from alignment at H-paniculata_contig452:29241..29820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig452.11363.1 ID=mRNA_H-paniculata_contig452.11363.1|Name=mRNA_H-paniculata_contig452.11363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=580bp|location=Sequence derived from alignment at H-paniculata_contig452:29241..29820+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGGATAACGGAGGGACTGCTGACGGGAGGGGCGGAGATAGCGGCGGC
GCAGGCACCGGCAAAGGTCGTGGAAACAGCAGCGGGTCAGGAGGTCGCGA
TGAAAGTGATGGAAGCAACGAAAGCGACGAACACAGGAACGGCGGTGGTG
GCGGCACCGGCGACCTTGGAGGCGGAGGATCAGGAAGAACCACCGGCCGC
GCTGCTGGTGGGACCGAGTATGTCGCTGGCGACTGGGAGAGGGGTGGAAC
AAGGGAAATACGTAATACAGAAGGCACCGGAAGGGGCGATGGTGGCGGGG
GTCGCGAAGGGAGTGATGGCTCAGGTAACGCCGACGGCTTCAGGAACGAA
GAAGAAACTGGAGTCGACGTGGACGCCGAGGGGTGGACCGCCCGCGGCGC
AGAGACCGAAGGGCGGGGACGAGCGAGGGACAGGGACGACATCGGGAGTG
GGGAAGGCGACGGCGGTGACTGTACAAGAGGCGGCAATGGCGTCAGCACG
GAAGGCCGCGGCGGCAGAGACGGAGAATGACGCAAGCGCGGAGACTGACA
CGGCGCGGGCGGAGGCGGAGGTGGCTGCGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig452:29241..29820+

>mRNA_H-paniculata_contig452.11363.1 ID=mRNA_H-paniculata_contig452.11363.1|Name=mRNA_H-paniculata_contig452.11363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig452:29241..29820+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGGATAACGGAGGGACTGCTGACGGGAGGGGCGGAGATAGCGGCGGC
GCAGGCACCGGCAAAGGTCGTGGAAACAGCAGCGGGTCAGGAGGTCGCGA
TGAAAGTGATGGAAGCAACGAAAGCGACGAACACAGGAACGGCGGTGGTG
GCGGCACCGGCGACCTTGGAGGCGGAGGATCAGGAAGAACCACCGGCCGC
GCTGCTGGTGGGACCGAGTATGTCGCTGGCGACTGGGAGAGGGGTGGAAC
AAGGGAAATACGTAATACAGAAGGCACCGGAAGGGGCGATGGTGGCGGGG
GTCGCGAAGGGAGTGATGGCTCAGGTAACGCCGACGGCTTCAGGAACGAA
GAAGAAACTGGAGTCGACGTGGACGCCGAGGGGTGGACCGCCCGCGGCGC
AGAGACCGAAGGGCGGGGACGAGCGAGGGACAGGGACGACATCGGGAGTG
GGGAAGGCGACGGCGGTGACTGTACAAGAGGCGGCAATGGCGTCAGCACG
GAAGGCCGCGGCGGCAGAGACGGAGAATGACGCAAGCGCGGAGACTGACA
CGGCGCGGGCGGAGGCGGAGGTGGCTGCGACGGGGATAACGGAGGGACTG
CTGACGGGAGGGGCGGAGATAGCGGCGGCGCAGGCACCGGCAAAGGTCGT
GGAAACAGCAGCGGGTCAGGAGGTCGCGATGAAAGTGATGGAAGCAACGA
AAGCGACGAACACAGGAACGGCGGTGGTGGCGGCACCGGCGACCTTGGAG
GCGGAGGATCAGGAAGAACCACCGGCCGCGCTGCTGGTGGGACCGAGTAT
GTCGCTGGCGACTGGGAGAGGGGTGGAACAAGGGAAATACGTAATACAGA
AGGCACCGGAAGGGGCGATGGTGGCGGGGGTCGCGAAGGGAGTGATGGCT
CAGGTAACGCCGACGGCTTCAGGAACGAAGAAGAAACTGGAGTCGACGTG
GACGCCGAGGGGTGGACCGCCCGCGGCGCAGAGACCGAAGGGCGGGGACG
AGCGAGGGACAGGGACGACATCGGGAGTGGGGAAGGCGACGGCGGTGACT
GTACAAGAGGCGGCAATGGCGTCAGCACGGAAGGCCGCGGCGGCAGAGAC
GGAGAATGACGCAAGCGCGGAGACTGACACGGCGCGGGCGGAGGCGGAGG
TGGCTGCG
back to top