mRNA_H-paniculata_contig45087.11343.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45087.11343.1
Unique NamemRNA_H-paniculata_contig45087.11343.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45087.11343.1 vs. uniprot
Match: A0A6H5JN82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN82_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 9.250e-7
Identity = 28/112 (25.00%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:    1 MVFEGSPSGAWTIFEDWFRDTTSGERTRVRKDFENLAVQPNETPNEFLTRSFVIVERMKEIGVDMTETEIHHQIVRSLPDRFAIAKHMMLVIKNLSRKDLEEGVRTAKLEMD 336
            ++  G P+ +W IF + F+     ERT ++ +++ L       P E+L+R +V+ +R+   GV +TE + +  +VR+L   + +    ++    L ++ +E  +  A  EM+
Sbjct:  204 IISSGCPTESWRIFRNHFQLHAHTERTSLQLEWQELTQGVQHHPKEYLSRGWVLRQRLSSWGVKITEDDANRHLVRNLLPEYVVYTGFLMSESGLEKERVERIIVNAWAEME 315
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BLAST of mRNA_H-paniculata_contig45087.11343.1 vs. uniprot
Match: UPI00063AB69A (uncharacterized protein LOC105767199 n=1 Tax=Gossypium raimondii TaxID=29730 RepID=UPI00063AB69A)

HSP 1 Score: 52.0 bits (123), Expect = 2.340e-5
Identity = 29/100 (29.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:   16 SPSGAWTIFEDWFRDTTSGERTRV---RKDFENLAVQPNETPNEFLTRSFVIVERMKEIGVDMTETEIHHQIVRSLPDRFAIAKHMMLVIKNLSRKDLEE 306
            SP  AW   ++ F  T    + +V   R+DFENL ++ +ET  ++  R   IV  ++ +GVD TE+ +  +++ +L ++F      +   ++LS   L E
Sbjct:   88 SPKQAWEKLKEEFMGTDKTRQQQVMNLRRDFENLRMRESETIKQYSDRIMAIVNSIRLLGVDFTESRVVEKVITTLSEKFESKISSLEDSRDLSAISLSE 187
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BLAST of mRNA_H-paniculata_contig45087.11343.1 vs. uniprot
Match: A0A151SHZ5_CAJCA (Uncharacterized protein n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SHZ5_CAJCA)

HSP 1 Score: 51.2 bits (121), Expect = 3.020e-5
Identity = 31/99 (31.31%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:   28 AWTIFEDWFRDTTSGERTRV---RKDFENLAVQPNETPNEFLTRSFVIVERMKEIGVDMTETEIHHQIVRSLPDRFAIAKHMMLVI---KNLSRKDLEE 306
            AW I E      T  ++ R+   R+ +E L+++ NET  +++TR   +V  MK +G  M E ++  +++R+LP +F    H+++ I   KNL    L+E
Sbjct:   94 AWEILERVHSGATKTKKVRLQTLRRQYELLSMESNETVVDYITRVQTMVNTMKGLGEKMAELQVIEKVLRTLPMKF---DHIVVAIEESKNLEDMSLDE 189
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BLAST of mRNA_H-paniculata_contig45087.11343.1 vs. uniprot
Match: A0A151T3F7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T3F7_CAJCA)

HSP 1 Score: 51.2 bits (121), Expect = 5.830e-5
Identity = 34/112 (30.36%), Postives = 62/112 (55.36%), Query Frame = 1 
Query:   28 AWTIFEDWFRDTTSGERTRV---RKDFENLAVQPNETPNEFLTRSFVIVERMKEIGVDMTETEIHHQIVRSLPDRFAIAKHMMLVI---KNLSRKDLEEGVRTAKLEMDLED 345
            AW I E      T  ++ R+   R+ +E L+++ NET  +++TR   +V  MK +G  M E ++  +++R+LP +F    H+++ I   KNL    L+E   + + E++ ED
Sbjct:   94 AWEILERVHGGATKTKKVRLQTLRRQYELLSMESNETVVDYITRVQTMVNTMKGLGEKMAELQVIEKVLRTLPMKF---DHIVVEIEESKNLEDMSLDELQGSLEQEVNSED 202
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BLAST of mRNA_H-paniculata_contig45087.11343.1 vs. uniprot
Match: A0A8J5YPG1_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YPG1_9ROSI)

HSP 1 Score: 50.8 bits (120), Expect = 7.510e-5
Identity = 30/103 (29.13%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:   16 SPSGAWTIFEDWFRDTTSGERTR------VRKDFENLAVQPNETPNEFLTRSFVIVERMKEIGVDMTETEIHHQIVRSLPDRFAIAKHMMLVIKNLSRKDLEE 306
            +P  AW   ++ F+ T   ERTR      +R+DFENL ++  ET  ++  R   +V  ++ +G   +ET I  +++ +LP+R+      +   +NL+   L E
Sbjct:   91 TPKQAWDKLKEEFQGT---ERTRQQQLLNLRRDFENLKMKEEETVKQYSDRIMAVVNSIRLLGEQFSETRIVEKVLSTLPERYEAKISSLEDSRNLATISLTE 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45087.11343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JN82_9PHAE9.250e-725.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00063AB69A2.340e-529.00uncharacterized protein LOC105767199 n=1 Tax=Gossy... [more]
A0A151SHZ5_CAJCA3.020e-531.31Uncharacterized protein n=2 Tax=Cajanus cajan TaxI... [more]
A0A151T3F7_CAJCA5.830e-530.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5YPG1_9ROSI7.510e-529.13Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45087contigH-paniculata_contig45087:18..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930353.4513566-CDS-H-paniculata_contig45087:17..3801622930353.4513566-CDS-H-paniculata_contig45087:17..380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45087 18..380 +
1691481254.2447498-CDS-H-paniculata_contig45087:17..3801691481254.2447498-CDS-H-paniculata_contig45087:17..380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45087 18..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45087.11343.1prot_H-paniculata_contig45087.11343.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45087 18..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45087.11343.1

>prot_H-paniculata_contig45087.11343.1 ID=prot_H-paniculata_contig45087.11343.1|Name=mRNA_H-paniculata_contig45087.11343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MVFEGSPSGAWTIFEDWFRDTTSGERTRVRKDFENLAVQPNETPNEFLTR
SFVIVERMKEIGVDMTETEIHHQIVRSLPDRFAIAKHMMLVIKNLSRKDL
EEGVRTAKLEMDLEDESGKGG
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mRNA from alignment at H-paniculata_contig45087:18..380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45087.11343.1 ID=mRNA_H-paniculata_contig45087.11343.1|Name=mRNA_H-paniculata_contig45087.11343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at H-paniculata_contig45087:18..380+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTTGAGGGCTCGCCATCTGGGGCGTGGACTATTTTTGAAGACTG
GTTCAGAGACACAACATCTGGAGAACGTACTAGAGTTAGGAAAGATTTTG
AGAACCTAGCAGTACAGCCAAATGAGACACCAAACGAATTTCTGACTAGG
TCTTTTGTCATTGTAGAGCGGATGAAGGAGATTGGTGTTGACATGACAGA
GACAGAAATTCACCATCAGATTGTTCGTTCCCTGCCTGATCGTTTCGCCA
TTGCGAAACACATGATGCTTGTGATAAAGAATTTGTCTAGGAAAGATCTG
GAAGAAGGGGTCCGAACTGCTAAGCTGGAAATGGATCTCGAGGATGAGTC
AGGCAAGGGGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig45087:18..380+

>mRNA_H-paniculata_contig45087.11343.1 ID=mRNA_H-paniculata_contig45087.11343.1|Name=mRNA_H-paniculata_contig45087.11343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig45087:18..380+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTTGAGGGCTCGCCATCTGGGGCGTGGACTATTTTTGAAGACTG
GTTCAGAGACACAACATCTGGAGAACGTACTAGAGTTAGGAAAGATTTTG
AGAACCTAGCAGTACAGCCAAATGAGACACCAAACGAATTTCTGACTAGG
TCTTTTGTCATTGTAGAGCGGATGAAGGAGATTGGTGTTGACATGACAGA
GACAGAAATTCACCATCAGATTGTTCGTTCCCTGCCTGATCGTTTCGCCA
TTGCGAAACACATGATGCTTGTGATAAAGAATTTGTCTAGGAAAGATCTG
GAAGAAGGGGTCCGAACTGCTAAGCTGGAAATGGATCTCGAGGATGAGTC
AGGCAAGGGGGGAATGGTGTTTGAGGGCTCGCCATCTGGGGCGTGGACTA
TTTTTGAAGACTGGTTCAGAGACACAACATCTGGAGAACGTACTAGAGTT
AGGAAAGATTTTGAGAACCTAGCAGTACAGCCAAATGAGACACCAAACGA
ATTTCTGACTAGGTCTTTTGTCATTGTAGAGCGGATGAAGGAGATTGGTG
TTGACATGACAGAGACAGAAATTCACCATCAGATTGTTCGTTCCCTGCCT
GATCGTTTCGCCATTGCGAAACACATGATGCTTGTGATAAAGAATTTGTC
TAGGAAAGATCTGGAAGAAGGGGTCCGAACTGCTAAGCTGGAAATGGATC
TCGAGGATGAGTCAGGCAAGGGGGGA
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