mRNA_H-paniculata_contig4496.11313.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4496.11313.1
Unique NamemRNA_H-paniculata_contig4496.11313.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4496.11313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4496contigH-paniculata_contig4496:5262..6856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930349.8614566-CDS-H-paniculata_contig4496:5261..52991622930349.8614566-CDS-H-paniculata_contig4496:5261..5299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4496 5262..5299 +
1691481252.6728072-CDS-H-paniculata_contig4496:5261..52991691481252.6728072-CDS-H-paniculata_contig4496:5261..5299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4496 5262..5299 +
1622930349.8741696-CDS-H-paniculata_contig4496:6531..68561622930349.8741696-CDS-H-paniculata_contig4496:6531..6856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4496 6532..6856 +
1691481252.6833107-CDS-H-paniculata_contig4496:6531..68561691481252.6833107-CDS-H-paniculata_contig4496:6531..6856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4496 6532..6856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4496.11313.1prot_H-paniculata_contig4496.11313.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4496 5262..6856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4496.11313.1

>prot_H-paniculata_contig4496.11313.1 ID=prot_H-paniculata_contig4496.11313.1|Name=mRNA_H-paniculata_contig4496.11313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
SERANINSRVPQRTAKHARHHDKPCFHQPTNQPTRSPALAMSHHIMSSDA
GEDSMDSCDDHSTTATTTNTNTYDEEAEENDSMMTTAGIVNNSATNEAAG
GQNTNDTAAATASDGHTDSHA
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mRNA from alignment at H-paniculata_contig4496:5262..6856+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4496.11313.1 ID=mRNA_H-paniculata_contig4496.11313.1|Name=mRNA_H-paniculata_contig4496.11313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1595bp|location=Sequence derived from alignment at H-paniculata_contig4496:5262..6856+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGAACGCGCCAACATCAATTCAAGGGTACCCCAAAGGTGAGGAATTGG
GGCAAGTGTACGCGCGAGAGGGATTGTAACGTTTTGTTGTCCTCATCATC
CATGGAGATATAGGTGGCCTTGCTTATCTGTGACAAGAGCTCTGTGGACG
GCGGTGAAAAGTTGCGCGGGCAAATTTGGTCGATTCTCATGTGATCCACA
GAGACAATACGATGATGTATTCATTGCTTTGTACTCGCTTTGTCGTTTTC
CCTCGAGAGTGCGTATTTGTTGTGTAGTAACGGGCTTCTGCTCAAGCGCA
GATCATGCTGCAACATGAGGAATGTGGATATTACGCAGAAATTGGTGATG
TCTCATTCGGTTGCAGCCAGAAGTTTACTCCAGTTCGTCCTTCCTGTAAA
AAACACAAAATAACCAAACCCAAACCGCATTTTCCAAACGATGGAAAATG
GCTAACGGTTCCCACTCCGTTCGCGAACGACTGCGTTCTTGACGAGCCAG
TGTGGGCAAGGCTGACCCCACTCCCGGAATGGTATAAGAGCTCGAACTGA
GGAATCGTGTTGACAGAGAGGTTGTGATGCAATCCTTGTTATCAACAGTT
CTGGTACATATGTAGTGTTCATTAGGCATTAAATAATCAGGTAACCCTGC
TGGCGATTAACCATTTAAATGATATGATTAAAAACAAACTGCATATCAAG
ACACGCACAGACGACGTGAGACCGACGAACAGCCGTTCGTACAGACAGCA
CATCGTTAAGTCAGATAGTCCAGTGGTAACATGGTGTCAATTTCGTTGCG
ATAACATACGTTGGAATATATGTAGTCGCTCTTTCTTTTCTGCCCACGCT
CCATCTACATGGGTGCCCCCGTACCGCTGATGTCTTTAAAACCACCGCCA
AAGTAAAACAGCACCCACCAAGATTGTAACCCCAAATCCTAACCTGTACT
CACTGTACACGCGTTGCTCTTTTCCTTTTAACATACACGTTACGCACAAT
TAGTGAAAGCAACCAGAACGGAGGATCTATGTTATGCCGCCGTAGATGAG
CATAATGCTGCCGCCTCAGTTACCCTAAATATACACCTCTATTAGGTTCA
TACATCGCAAACATGTTATTTCAGTAGGCTACACTCTGACTGTAGGCTGT
TGCCTACATTCTACCCTACAGTACATCATCTACTCAAATGATACCTTTTT
AAAAACACGCTCGCGATGTTGCTTTCGTTTAACGTTGGTTAAACCGTCCC
CCCCCCAACCAAATACACAGAACAGCCAAACACGCAAGACATCACGACAA
ACCCTGCTTCCACCAACCAACCAACCAACCAACGAGATCGCCAGCCTTGG
CCATGTCACATCACATCATGTCGTCAGACGCTGGTGAGGACAGCATGGAC
TCGTGTGACGACCACTCCACCACTGCCACCACCACCAATACCAACACTTA
CGACGAGGAGGCTGAAGAAAATGACAGCATGATGACAACAGCAGGAATAG
TCAACAACAGTGCTACGAACGAAGCAGCAGGAGGACAAAATACCAATGAT
ACTGCCGCCGCCACGGCCAGCGACGGCCACACCGACAGCCACGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4496:5262..6856+

>mRNA_H-paniculata_contig4496.11313.1 ID=mRNA_H-paniculata_contig4496.11313.1|Name=mRNA_H-paniculata_contig4496.11313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig4496:5262..6856+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGAACGCGCCAACATCAATTCAAGGGTACCCCAAAGAGTGAACGCGCC
AACATCAATTCAAGGGTACCCCAAAGAACAGCCAAACACGCAAGACATCA
CGACAAACCCTGCTTCCACCAACCAACCAACCAACCAACGAGATCGCCAG
CCTTGGCCATGTCACATCACATCATGTCGTCAGACGCTGGTGAGGACAGC
ATGGACTCGTGTGACGACCACTCCACCACTGCCACCACCACCAATACCAA
CACTTACGACGAGGAGGCTGAAGAAAATGACAGCATGATGACAACAGCAG
GAATAGTCAACAACAGTGCTACGAACGAAGCAGCAGGAGGACAAAATACC
AATGATACTGCCGCCGCCACGGCCAGCGACGGCCACACCGACAGCCACGC
CAACAGCCAAACACGCAAGACATCACGACAAACCCTGCTTCCACCAACCA
ACCAACCAACCAACGAGATCGCCAGCCTTGGCCATGTCACATCACATCAT
GTCGTCAGACGCTGGTGAGGACAGCATGGACTCGTGTGACGACCACTCCA
CCACTGCCACCACCACCAATACCAACACTTACGACGAGGAGGCTGAAGAA
AATGACAGCATGATGACAACAGCAGGAATAGTCAACAACAGTGCTACGAA
CGAAGCAGCAGGAGGACAAAATACCAATGATACTGCCGCCGCCACGGCCA
GCGACGGCCACACCGACAGCCACGCC
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