mRNA_H-paniculata_contig448.11290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig448.11290.1 vs. uniprot
Match: A0A6H5J9Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z1_9PHAE) HSP 1 Score: 998 bits (2581), Expect = 0.000e+0 Identity = 597/954 (62.58%), Postives = 659/954 (69.08%), Query Frame = 1
Query: 43 DGDTFVQRISELFMKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVNVSCQPAKAKVGKRRPSQIASQ----------------------------------KQ---------EDASDPQWVQQQHYAMQPEGG---FPLPG-----APNSGSARMFGGGQSP--AVGNSGXXXXXXXXXXXXXTLS---APYD---------GVPPNTSHSEGQSGSRMFPPASAGTGGGMSSPGRMDRRGGHADVSSWAAVPGGQGRPNST-GMVKGEMSNGGSSGEEDPLRKRPRGWSHR-------GTGDSAPASMGAGAIVSGPGGAGRIRGSPTPHHPPGSGGATVTQTGGAGTPGGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETEPSGVFGRVLGMYEKQTVTHNKKFLYRQMQAHPWTVRDRGGW-GSGGATET-QLRSAWLFNDPFSGQWTISLDYQAHPCNPIYQYSVPQDCARSGTPCMDNNTFISNSLKVKGCTTLIPPIGVLLLSENSVREVCAAVWVGCFTANPPEVAFDLICRLMSMTESHYFTDDSDRYAAEVLDAQRAEVLGYFLVGVCEDPADRVVQRENYLAFMEWFVYTLPEVALPVKIWRMYRALHDDNIPFVSFPLSQDKSAFYSHRQAMSGPAVPGRFSFRFSRQPYHVTVDYTVQGRAVEGRPQATVMSYRIRISFIDMRVMMLRIENLLLRGDGQVTQGRLLEETSLMQG-IGGGDGGPXXXXXXXXXXXXXXXXXXXXXXXXHESGLG---SLERVIAQVDMEEGVPSNG-------GRPDLRVTVPDSGDGYGQGHRAGTGGXXXXXXXXXGGGWTDMFHGMSVEVRQQQEG 2646
D D+FV RIS+ FMKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVV+VSCQPAKAKVGKR+PS +A+Q KQ DA+ P+ + QP+GG F +PG AP SGS+++F G S A+ +G + APYD G+ P+ G S S F G G R D A PG + S G +G GG G + + G G GD A + + +G G+GR G + GG TPGG KKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETE SG FG VLGM+EKQTVTHNK FLYRQMQA PW VR GW G GG ET Q+RSAWLFNDP +GQWTI+LDYQ+ P +PIYQY++P + R GTPCMD NTF +NS+KVKGCTTLIPPI VLLLSENSVREVC AVWVGCFTANPPEVAFDL+CRLMSMTES + TD+SDRYAAEV D+QR E+L +FLVG+CEDPADRVV+RE+YLAFMEWFVYTLP+VALPVKIWRMYRAL DDNIPFVSFPLSQDKSAFYSHRQAMSGPA+PGRFSFRFSRQP +TVDYTVQ RAVEGRPQATVMSYRI+IS ID+R +MLRIENLLLRGD QV QGR+LEETSL+QG + G GG XXXXXXXXXXXXXXXX HE GLG SLERVIAQVDMEE S RP + P+S G G XXXXXXXX GGGWTDMF GM+VEVR ++EG
Sbjct: 41 DTDSFVSRISDWFMKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAKVGKRKPSILAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQGKQMLLMQEWVPSDAAPPRVMSACLPLAQPDGGGGHFGMPGLQQQAAPASGSSQLFSDGSSGGGAIDPNGMAVGGARGGVSPGLVGGGGAPYDAHGIDDGIPGLSPSPGSGRGSSASMTF-----GGGXXXXXXXXXXXRPDGVDEGGVGATPGRRAAGRSRRGRGEGGDVEGGGRGARGVVEEAAEGIMEVTMMSVLCGLGDPAGPGL---TVKTGGRGSGRAGGQSQ---------GPASPAGGLSTPGG-KKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETEQSGFFGLVLGMFEKQTVTHNKMFLYRQMQAQPWPVRGDRGWNGGGGPAETMQMRSAWLFNDPCTGQWTIALDYQSQPSSPIYQYNLPPEYIRQGTPCMDPNTFNTNSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRGEILSFFLVGICEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDEQVAQGRVLEETSLVQGPVENGGGGXXXXXXXXXXXXXXXXXSGSQNGAQHEPGLGPLGSLERVIAQVDMEESGDSGACVSRQEHARPPVDGGYPNSRGGS-AGSXXXXXXXXXXXXXXAGGGWTDMFQGMTVEVRGKEEG 975
BLAST of mRNA_H-paniculata_contig448.11290.1 vs. uniprot
Match: D7FLC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC4_ECTSI) HSP 1 Score: 822 bits (2122), Expect = 4.980e-268 Identity = 497/805 (61.74%), Postives = 554/805 (68.82%), Query Frame = 1
Query: 799 GMVKGEMSNGGSSGEEDPLRKRPR-GWSHRGTGDSAPASMGAGAIVSGPGGAGRIRGSPTPHHPPGSGGATVTQTGGAGTPGGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETEPSGVFGRVLGMYEKQTVTHNKKFLYRQMQAHPWTVRDRGGWGSGG--ATETQLRSAWLFNDPFSGQWTISLDYQAHPCNPIYQYSVPQDCARSGTPCMDNNTFISNSLKVKGCTTLIPPIGVLLLSENSVREVCAAVWVGCFTANPPEVAFDLICRLMSMTESHYFTDDSDRYAAEVLDAQRAEVLGYFLVGVCEDPADRVVQRENYLAFMEWFVYTLPEVALPVKIWRMYRALHDDNIPFVSFPLSQDKSAFYSHRQAMSGPAVPGRFSFRFSRQPYHVTVDYTVQGRAVEGRPQATVMSYRIRISFIDMRVMMLRIENLLLRGDGQVTQGRLLEETSLMQG-IGGGDGGPXXXXXXXXXXXXXXXXXXXXXXXXHESGLG---SLERVIAQVDMEEGVPSNGG-------RPDLRVTVPDSGDGYGQGHRAGTGGXXXXXXXXXGGGWTDMFHGMSVEVRQQQEGSRHVS---------------------------------------QQQRQHGGRGGDGPMHHGNNDNRGRGSPRAXXXXXGREGNDRXXXXXPPQPQRYNSQRKGVGAGKACFPGGGRMIAQGGNSLGFFDEPATGQQQXXXXXXXXXVGGNGHSWTPATANGGILNLEYVEFASF 3054
G+VKGE+S +G+E+ LRKRPR WS G GD A + + +G G+GR G + GG TPGG KKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETE SG FG VLGM+EKQTVTHNK FLYRQMQA PW VR GW GG A TQ+RSAWLFNDP +GQWTI+LDYQ+ P +PIYQY++P + R GTPCMD +TF NS+KVKGCTTLIPPI VLLLSENSVREVC AVWVGCFTANPPEVAFDL+CRLMSMTES + TD+SDRYAAEV D+QRAE+L +FLVG+ EDPADRVV+RE+YLAFMEWFVYTLP+VALPVKIWRMYRAL DDNIPFVSFPLSQDKSAFYSHRQAMSGPA+PGRFSFRFSRQP +TVDYTVQ RAVEGRPQATVMSYRI+IS ID+R +MLRIENLLLRGD QV QGR+LEETSL+QG + G XXXXXXXXXXXXXXXXXX HE+GLG SLERVIAQVDMEE S G RP + P+S +G G+ XXXXXXXXX GWTDMF GM+VE+ Q+Q H Q + G R GDG M G D RG G+P+ G P P +S C P GRM Q G++L FFD+P G Q VGG A +GG +NLEYVEF +F
Sbjct: 21 GVVKGEISRAAGAGQEESLRKRPRESWS--GLGDPAGPGL---TVKTGGRGSGRAGGQSQ---------GPASPAGGLSTPGG-KKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETEQSGFFGLVLGMFEKQTVTHNKMFLYRQMQAQPWPVRGDRGWNGGGGPAETTQMRSAWLFNDPCTGQWTIALDYQSQPSSPIYQYNLPPEYTRQGTPCMDPSTFNGNSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRAEILSFFLVGIYEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDEQVAQGRVLEETSLVQGPVENGXXXXXXXXXXXXXXXXXXXXXXSQNGAQHEAGLGPLGSLERVIAQVDMEESGDSGAGVSRQEHARPPVHGGYPNS-----RGGSTGSXXXXXXXXXXXXXGWTDMFQGMTVELAQEQAAQLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQGGRQGQRVGDGGMPGGKGDRRG-GAPQFSQQHGG------------PGPSTSSSYM--------CGPAVGRMSVQTGDTLSFFDDPPQGNQ----VQHQLPVGG-------AAGHGGAMNLEYVEFPNF 773
BLAST of mRNA_H-paniculata_contig448.11290.1 vs. uniprot
Match: D7FLC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC3_ECTSI) HSP 1 Score: 205 bits (522), Expect = 1.490e-57 Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1
Query: 82 MKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVNVSCQPAKAK 372
MKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVV+VSCQPAKAK
Sbjct: 1 MKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAK 97 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig448.11290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig448.11290.1 >prot_H-paniculata_contig448.11290.1 ID=prot_H-paniculata_contig448.11290.1|Name=mRNA_H-paniculata_contig448.11290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1090bp MKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELback to top mRNA from alignment at H-paniculata_contig448:1040..28315- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig448.11290.1 ID=mRNA_H-paniculata_contig448.11290.1|Name=mRNA_H-paniculata_contig448.11290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=27276bp|location=Sequence derived from alignment at H-paniculata_contig448:1040..28315- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig448:1040..28315- >mRNA_H-paniculata_contig448.11290.1 ID=mRNA_H-paniculata_contig448.11290.1|Name=mRNA_H-paniculata_contig448.11290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6540bp|location=Sequence derived from alignment at H-paniculata_contig448:1040..28315- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |