mRNA_H-paniculata_contig44774.11287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI) HSP 1 Score: 78.2 bits (191), Expect = 1.740e-14 Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query: 34 EPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAA 342
EP+ ++EA AS E E W+RA E E LI+N WT+ + P + ++ +I+K+K DGKV +YK RLV G Q GI Y E +P + S + + SLAA
Sbjct: 564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAA 666
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A2P4X8M5_9STRA (Putative Pol Polyprotein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8M5_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 3.710e-14 Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 25 LVVEPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAAI 345
++V+PKN++EA P E W+ A E++ L N W + +P+N ++ + +YK K+ DG+VE+Y+ RLVA GD Q+ G+ Y S L S K++L+++ +
Sbjct: 15 VLVDPKNYREAMRDPRVEKWKEAMRTEIEALEHNDTWEVIVKPRNAKLLHSKWVYKLKIYADGRVERYRARLVARGDEQVYGVDYTFTFSAVLDLVSGKVILAVSRV 121
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A1M2VH23_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VH23_TRAPU) HSP 1 Score: 71.2 bits (173), Expect = 1.460e-13 Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = 1
Query: 34 EPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAA 342
EP+ EAQASP+W HW+ A E+ +L ++ + VE P N +V + +++ K +G + +YK RLVA G Q+ GI + E +P AS + +L+LAA
Sbjct: 12 EPRTLAEAQASPDWPHWENAIAKEIDNLRKHDTYDLVEPPHNTNIVGSRFVFRIKRDAEGSITQYKARLVAQGFTQMPGIDFNETFAPVAKLASIRTILALAA 114
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A8J5YQU7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YQU7_9ROSI) HSP 1 Score: 73.9 bits (180), Expect = 5.290e-13 Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 1
Query: 19 GDLVV----EPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVL 330
GD+++ EP+ +QE SP+ E W A EM + EN+ WT V+ P+ + ++K+K DG V+ YK RLVA G RQI G+ Y +A SPA S +++L
Sbjct: 537 GDILLIDQDEPRTYQEVVTSPDSEKWLEAMRSEMDSMYENQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVQTYKGRLVAKGFRQIHGVDYDKAFSPAAMFKSIRILL 644
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A1E1KFU7_9HELO (Uncharacterized protein n=1 Tax=Rhynchosporium commune TaxID=914237 RepID=A0A1E1KFU7_9HELO) HSP 1 Score: 71.2 bits (173), Expect = 4.590e-12 Identity = 35/104 (33.65%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 34 EPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAAI 345
+P++++EA + PE W+ A E E L++NR W V PK++ ++T +++K+G +G++ +YK R+VA G +QI+G + E S + AAS +++ ++ A+
Sbjct: 282 DPQSYKEALSGPEAPLWKEAIEAEYNSLLQNRTWKVVRMPKDRKPLTTKWTFRKKLGGEGEITRYKARMVARGFQQIEGFDFTETYSNVVKAASYRILFAMTAL 385
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI) HSP 1 Score: 70.5 bits (171), Expect = 8.840e-12 Identity = 35/104 (33.65%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 31 VEPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAA 342
+EP + EA+ +WE W +A + +M L+ W V+ P + + + +YK K+ E+GK +++K RLVA G Q+ G+ Y E +P S +++L+LAA
Sbjct: 730 LEPATYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAA 833
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA) HSP 1 Score: 67.4 bits (163), Expect = 1.310e-11 Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query: 79 HWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAAI 345
HW+ A + E + L + W V P+N+ V+ + +YK K +DGKV +YK RLVA G Q G+ Y E SP + + ++VLSLAA+
Sbjct: 64 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAM 152
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A438KKG9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KKG9_VITVI) HSP 1 Score: 68.2 bits (165), Expect = 2.960e-11 Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query: 31 VEPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDG-KVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAA 342
+EPK +QEA S E + W +A + EM L +N W V +PK++ VV + ++KRK G G + +YK RLVA G Q +G+ Y E SP + +S +++L+ A
Sbjct: 1 MEPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVA 105
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A5K1K0E1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0E1_9APHY) HSP 1 Score: 68.9 bits (167), Expect = 2.990e-11 Identity = 40/109 (36.70%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 19 GDLV-VEPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAA 342
GD + +P + +EAQASP+W W+RA EVEM++L + + V +P V+ + +++ RK +G V + K R+VA G QI GI + E +P +S +++++LAA
Sbjct: 315 GDPIGSDPLSLREAQASPDWPQWERAIEVEMENLRAHGTYDLVVKPPGAHVIGSKLVFHRKRNAEGAVTQCKVRVVAQGFAQIPGIDFNETFAPVAKPSSLRVMIALAA 423
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA) HSP 1 Score: 68.9 bits (167), Expect = 3.010e-11 Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 1
Query: 34 EPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAAI 345
EP ++++A +S HW+ A + E + L + W V P+N+ V+ + +YK K +DGKV +YK RLVA G Q G+ Y+E SP + + ++VLSLAA+
Sbjct: 615 EPTHYKQAVSSV---HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVLSLAAM 715 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig44774.11287.1 >prot_H-paniculata_contig44774.11287.1 ID=prot_H-paniculata_contig44774.11287.1|Name=mRNA_H-paniculata_contig44774.11287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp MPEELRGDLVVEPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERback to top mRNA from alignment at H-paniculata_contig44774:1248..1592+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig44774.11287.1 ID=mRNA_H-paniculata_contig44774.11287.1|Name=mRNA_H-paniculata_contig44774.11287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig44774:1248..1592+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig44774:1248..1592+ >mRNA_H-paniculata_contig44774.11287.1 ID=mRNA_H-paniculata_contig44774.11287.1|Name=mRNA_H-paniculata_contig44774.11287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig44774:1248..1592+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |