mRNA_H-paniculata_contig44774.11287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44774.11287.1
Unique NamemRNA_H-paniculata_contig44774.11287.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI)

HSP 1 Score: 78.2 bits (191), Expect = 1.740e-14
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAA 342
            EP+ ++EA AS E E W+RA E E   LI+N  WT+ + P  +  ++  +I+K+K   DGKV +YK RLV  G  Q  GI Y E  +P +   S + + SLAA
Sbjct:  564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAA 666          
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A2P4X8M5_9STRA (Putative Pol Polyprotein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8M5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.710e-14
Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   25 LVVEPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAAI 345
            ++V+PKN++EA   P  E W+ A   E++ L  N  W  + +P+N  ++ +  +YK K+  DG+VE+Y+ RLVA GD Q+ G+ Y    S  L   S K++L+++ +
Sbjct:   15 VLVDPKNYREAMRDPRVEKWKEAMRTEIEALEHNDTWEVIVKPRNAKLLHSKWVYKLKIYADGRVERYRARLVARGDEQVYGVDYTFTFSAVLDLVSGKVILAVSRV 121          
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A1M2VH23_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VH23_TRAPU)

HSP 1 Score: 71.2 bits (173), Expect = 1.460e-13
Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAA 342
            EP+   EAQASP+W HW+ A   E+ +L ++  +  VE P N  +V +  +++ K   +G + +YK RLVA G  Q+ GI + E  +P    AS + +L+LAA
Sbjct:   12 EPRTLAEAQASPDWPHWENAIAKEIDNLRKHDTYDLVEPPHNTNIVGSRFVFRIKRDAEGSITQYKARLVAQGFTQMPGIDFNETFAPVAKLASIRTILALAA 114          
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A8J5YQU7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YQU7_9ROSI)

HSP 1 Score: 73.9 bits (180), Expect = 5.290e-13
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 1
Query:   19 GDLVV----EPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVL 330
            GD+++    EP+ +QE   SP+ E W  A   EM  + EN+ WT V+ P+    +    ++K+K   DG V+ YK RLVA G RQI G+ Y +A SPA    S +++L
Sbjct:  537 GDILLIDQDEPRTYQEVVTSPDSEKWLEAMRSEMDSMYENQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVQTYKGRLVAKGFRQIHGVDYDKAFSPAAMFKSIRILL 644          
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A1E1KFU7_9HELO (Uncharacterized protein n=1 Tax=Rhynchosporium commune TaxID=914237 RepID=A0A1E1KFU7_9HELO)

HSP 1 Score: 71.2 bits (173), Expect = 4.590e-12
Identity = 35/104 (33.65%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAAI 345
            +P++++EA + PE   W+ A E E   L++NR W  V  PK++  ++T   +++K+G +G++ +YK R+VA G +QI+G  + E  S  + AAS +++ ++ A+
Sbjct:  282 DPQSYKEALSGPEAPLWKEAIEAEYNSLLQNRTWKVVRMPKDRKPLTTKWTFRKKLGGEGEITRYKARMVARGFQQIEGFDFTETYSNVVKAASYRILFAMTAL 385          
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI)

HSP 1 Score: 70.5 bits (171), Expect = 8.840e-12
Identity = 35/104 (33.65%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   31 VEPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAA 342
            +EP  + EA+   +WE W +A + +M  L+    W  V+ P  +  + +  +YK K+ E+GK +++K RLVA G  Q+ G+ Y E  +P     S +++L+LAA
Sbjct:  730 LEPATYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAA 833          
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 67.4 bits (163), Expect = 1.310e-11
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   79 HWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAAI 345
            HW+ A + E + L +   W  V  P+N+ V+ +  +YK K  +DGKV +YK RLVA G  Q  G+ Y E  SP +   + ++VLSLAA+
Sbjct:   64 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAM 152          
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A438KKG9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KKG9_VITVI)

HSP 1 Score: 68.2 bits (165), Expect = 2.960e-11
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   31 VEPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDG-KVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAA 342
            +EPK +QEA  S E + W +A + EM  L +N  W  V +PK++ VV +  ++KRK G  G +  +YK RLVA G  Q +G+ Y E  SP +  +S +++L+  A
Sbjct:    1 MEPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVA 105          
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A5K1K0E1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0E1_9APHY)

HSP 1 Score: 68.9 bits (167), Expect = 2.990e-11
Identity = 40/109 (36.70%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   19 GDLV-VEPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAA 342
            GD +  +P + +EAQASP+W  W+RA EVEM++L  +  +  V +P    V+ + +++ RK   +G V + K R+VA G  QI GI + E  +P    +S +++++LAA
Sbjct:  315 GDPIGSDPLSLREAQASPDWPQWERAIEVEMENLRAHGTYDLVVKPPGAHVIGSKLVFHRKRNAEGAVTQCKVRVVAQGFAQIPGIDFNETFAPVAKPSSLRVMIALAA 423          
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA)

HSP 1 Score: 68.9 bits (167), Expect = 3.010e-11
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVERPKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPALAAASTKMVLSLAAI 345
            EP ++++A +S    HW+ A + E + L +   W  V  P+N+ V+ +  +YK K  +DGKV +YK RLVA G  Q  G+ Y+E  SP +   + ++VLSLAA+
Sbjct:  615 EPTHYKQAVSSV---HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVLSLAAM 715          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44774.11287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K690_LASNI1.740e-1441.75Retrovirus-related pol polyprotein from transposon... [more]
A0A2P4X8M5_9STRA3.710e-1435.51Putative Pol Polyprotein n=1 Tax=Phytophthora palm... [more]
A0A1M2VH23_TRAPU1.460e-1337.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5YQU7_9ROSI5.290e-1338.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A1E1KFU7_9HELO4.590e-1233.65Uncharacterized protein n=1 Tax=Rhynchosporium com... [more]
A0A177U1E5_9BASI8.840e-1233.65Integrase catalytic domain-containing protein n=2 ... [more]
A0A540NMU0_MALBA1.310e-1140.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438KKG9_VITVI2.960e-1139.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A5K1K0E1_9APHY2.990e-1136.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N5FUF0_9ROSA3.010e-1138.46Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44774contigH-paniculata_contig44774:1248..1592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.0
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog15368.BRADI2G06305.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37V5Q@33090,3GFFK@35493,3IKJW@38820,3M7B5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930346.2148912-CDS-H-paniculata_contig44774:1247..15921622930346.2148912-CDS-H-paniculata_contig44774:1247..1592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44774 1248..1592 +
1691481251.0947192-CDS-H-paniculata_contig44774:1247..15921691481251.0947192-CDS-H-paniculata_contig44774:1247..1592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44774 1248..1592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44774.11287.1prot_H-paniculata_contig44774.11287.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44774 1248..1592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44774.11287.1

>prot_H-paniculata_contig44774.11287.1 ID=prot_H-paniculata_contig44774.11287.1|Name=mRNA_H-paniculata_contig44774.11287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MPEELRGDLVVEPKNHQEAQASPEWEHWQRAEEVEMQDLIENRDWTQVER
PKNKLVVSTMVIYKRKVGEDGKVEKYKCRLVAHGDRQIKGIHYQEASSPA
LAAASTKMVLSLAAI
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mRNA from alignment at H-paniculata_contig44774:1248..1592+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44774.11287.1 ID=mRNA_H-paniculata_contig44774.11287.1|Name=mRNA_H-paniculata_contig44774.11287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig44774:1248..1592+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGAAGAACTGAGGGGCGACCTCGTTGTGGAGCCCAAGAATCACCA GGAGGCGCAGGCGTCGCCGGAATGGGAACACTGGCAAAGAGCGGAGGAGG TCGAGATGCAAGACCTAATCGAAAACAGGGATTGGACGCAAGTGGAGCGC CCGAAGAACAAGCTGGTTGTGAGCACGATGGTGATCTACAAAAGAAAAGT CGGCGAGGATGGAAAAGTGGAGAAATATAAGTGCCGCCTGGTCGCCCACG GAGACCGCCAGATCAAGGGCATCCATTACCAGGAAGCTTCGTCCCCTGCA CTCGCAGCGGCCAGCACAAAAATGGTGTTGTCGCTTGCGGCAATC
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Coding sequence (CDS) from alignment at H-paniculata_contig44774:1248..1592+

>mRNA_H-paniculata_contig44774.11287.1 ID=mRNA_H-paniculata_contig44774.11287.1|Name=mRNA_H-paniculata_contig44774.11287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig44774:1248..1592+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGAAGAACTGAGGGGCGACCTCGTTGTGGAGCCCAAGAATCACCA
GGAGGCGCAGGCGTCGCCGGAATGGGAACACTGGCAAAGAGCGGAGGAGG
TCGAGATGCAAGACCTAATCGAAAACAGGGATTGGACGCAAGTGGAGCGC
CCGAAGAACAAGCTGGTTGTGAGCACGATGGTGATCTACAAAAGAAAAGT
CGGCGAGGATGGAAAAGTGGAGAAATATAAGTGCCGCCTGGTCGCCCACG
GAGACCGCCAGATCAAGGGCATCCATTACCAGGAAGCTTCGTCCCCTGCA
CTCGCAGCGGCCAGCACAAAAATGGTGTTGTCGCTTGCGGCAATCATGCC
CGAAGAACTGAGGGGCGACCTCGTTGTGGAGCCCAAGAATCACCAGGAGG
CGCAGGCGTCGCCGGAATGGGAACACTGGCAAAGAGCGGAGGAGGTCGAG
ATGCAAGACCTAATCGAAAACAGGGATTGGACGCAAGTGGAGCGCCCGAA
GAACAAGCTGGTTGTGAGCACGATGGTGATCTACAAAAGAAAAGTCGGCG
AGGATGGAAAAGTGGAGAAATATAAGTGCCGCCTGGTCGCCCACGGAGAC
CGCCAGATCAAGGGCATCCATTACCAGGAAGCTTCGTCCCCTGCACTCGC
AGCGGCCAGCACAAAAATGGTGTTGTCGCTTGCGGCAATC
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