mRNA_H-paniculata_contig445.11234.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig445.11234.1
Unique NamemRNA_H-paniculata_contig445.11234.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig445.11234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig445contigH-paniculata_contig445:2756..3400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size193
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig445.11234.1prot_H-paniculata_contig445.11234.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig445 2756..3398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930339.410438-CDS-H-paniculata_contig445:2755..28511622930339.410438-CDS-H-paniculata_contig445:2755..2851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig445 2756..2851 -
1691481248.1925395-CDS-H-paniculata_contig445:2755..28511691481248.1925395-CDS-H-paniculata_contig445:2755..2851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig445 2756..2851 -
1622930339.4292316-CDS-H-paniculata_contig445:3305..33981622930339.4292316-CDS-H-paniculata_contig445:3305..3398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig445 3306..3398 -
1691481248.2034285-CDS-H-paniculata_contig445:3305..33981691481248.2034285-CDS-H-paniculata_contig445:3305..3398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig445 3306..3398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930339.44867-UTR-H-paniculata_contig445:3398..34001622930339.44867-UTR-H-paniculata_contig445:3398..3400Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig445 3399..3400 -
1691481248.2148042-UTR-H-paniculata_contig445:3398..34001691481248.2148042-UTR-H-paniculata_contig445:3398..3400Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig445 3399..3400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig445.11234.1

>prot_H-paniculata_contig445.11234.1 ID=prot_H-paniculata_contig445.11234.1|Name=mRNA_H-paniculata_contig445.11234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MDEYSRWVVNSGVIEEGNEDCDEEDDVGIGEKSARDSMRGSAHPSETSSK
RPSHSTKTGRVGP
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mRNA from alignment at H-paniculata_contig445:2756..3400-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig445.11234.1 ID=mRNA_H-paniculata_contig445.11234.1|Name=mRNA_H-paniculata_contig445.11234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at H-paniculata_contig445:2756..3400- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATGGATGAGTATTCGCGGTGGGTTGTTAACTCCGGCGTGATTGAAGAG
GGTAACGAAGATTGCGATGAAGAAGATGACGTCGGCATAGGAGAGGTTGG
TGGACCATAATGCGGAAGAGAAATACACCAAATGGTGTTATTGCCGTTGC
AGCCCAATCGCATTGATATCTGGACGTAGCATATTTCTCTCCTGGTGTAG
CGTTCTTCGATAGTAAATATATCAACGAAGTTGTATTTCATCGCTTCTCG
TTCGGTGTTCGCGTTGTGGGTAGCTGCCTGTGTGGTATCTACTTTGGAGT
ACAGGTCGCGGGAGCACGAGTAGTTTTCCTAACTAGATTGTTGACGTGTA
GAGCTACCTTCCTTCCAGCCAAAAGCCCTGTTAATTCAGACCTAGTTCCC
TTGTAGCCCTCGGATAAGAATTTGGGACGTCGGGTAAGAAGCTTCCGTGC
CTATGCCTGCTATGTTGAAGACTTGCAGCCGCGAGTGAATGAATATGGCT
AACTCCAAAGTTGTGAAATATACATCGTCTGGGTCTCGCGGGTACGCAGA
AATCAGCACGGGATTCCATGCGGGGGAGCGCACATCCCTCCGAAACGTCT
TCCAAGCGCCCCTCGCACTCAACCAAAACCGGTCGCGTCGGTCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig445:2756..3400-

>mRNA_H-paniculata_contig445.11234.1 ID=mRNA_H-paniculata_contig445.11234.1|Name=mRNA_H-paniculata_contig445.11234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig445:2756..3400- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAGTATTCGCGGTGGGTTGTTAACTCCGGCGTGATTGAAGAGGG
TAACGAAGATTGCGATGAAGAAGATGACGTCGGCATAGGAGAGATGGATG
AGTATTCGCGGTGGGTTGTTAACTCCGGCGTGATTGAAGAGGGTAACGAA
GATTGCGATGAAGAAGATGACGTCGGCATAGGAGAGAAATCAGCACGGGA
TTCCATGCGGGGGAGCGCACATCCCTCCGAAACGTCTTCCAAGCGCCCCT
CGCACTCAACCAAAACCGGTCGCGTCGGTCCCAAATCAGCACGGGATTCC
ATGCGGGGGAGCGCACATCCCTCCGAAACGTCTTCCAAGCGCCCCTCGCA
CTCAACCAAAACCGGTCGCGTCGGTCCC
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