mRNA_H-paniculata_contig44439.11224.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44439.11224.1
Unique NamemRNA_H-paniculata_contig44439.11224.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44439.11224.1 vs. uniprot
Match: D7G511_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G511_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.520e-37
Identity = 67/104 (64.42%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    4 QGALILENWLMVAPVDVAALKFAQDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAAHLAICQNPKDVWAMNAMSYVYEMEVK 315
            +GAL LE WLM APVD+ ALK +QDAH+ LGDSAN RDCV RVLPF+S+ TFGYG+VLGMHAFGL ENG+YA  EE A +A+     D+WA++AM++V+EME +
Sbjct:  168 EGALHLETWLMSAPVDLPALKLSQDAHLTLGDSANMRDCVGRVLPFWSDATFGYGNVLGMHAFGLVENGAYALAEERADMALAIQRTDIWAVHAMAHVFEMEAR 271          
BLAST of mRNA_H-paniculata_contig44439.11224.1 vs. uniprot
Match: UPI0012441A5E (tetratricopeptide repeat protein n=1 Tax=Hypericibacter adhaerens TaxID=2602016 RepID=UPI0012441A5E)

HSP 1 Score: 90.5 bits (223), Expect = 4.260e-19
Identity = 48/99 (48.48%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   22 ENWLMVAPVDVAALKFAQDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAAHLAICQNPKDVWAMNAMSYVYEMEVKL 318
            E  L+  P D+ A K  QD + FLGDSAN RD V RVLP +S +  GYG +LGM AFGL E+G Y Q E     AI +N  D WA +A+++V EM+ ++
Sbjct:   51 EAVLLEHPRDLFATKVLQDLYFFLGDSANLRDTVGRVLPSWSESDAGYGFLLGMLAFGLEESGDYQQAERLGRAAIARNAYDPWAHHAVAHVLEMQGRI 149          
BLAST of mRNA_H-paniculata_contig44439.11224.1 vs. uniprot
Match: A0A418WDR5_9PROT (Tetratricopeptide repeat protein n=1 Tax=Oleomonas cavernae TaxID=2320859 RepID=A0A418WDR5_9PROT)

HSP 1 Score: 89.0 bits (219), Expect = 2.020e-18
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   22 ENW---LMVAPVDVAALKFAQDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAAHLAICQNPKDVWAMNAMSYVYEME 309
            E+W    M  P D+ A++ AQ    FLG S   RD VARVLP +  +  GYGS+LGMHAFGL E G YAQ E A    + ++P+D W ++A+++V EM+
Sbjct:  113 EHWGRTAMAYPRDLTAVQLAQVTDFFLGYSTMLRDRVARVLPHWDTSVPGYGSILGMHAFGLEEAGDYAQAEAAGRECVERDPRDAWGVHAVAHVMEMQ 211          
BLAST of mRNA_H-paniculata_contig44439.11224.1 vs. uniprot
Match: A0A5J6MR69_9PROT (Tetratricopeptide repeat protein 38 family protein n=1 Tax=Hypericibacter terrae TaxID=2602015 RepID=A0A5J6MR69_9PROT)

HSP 1 Score: 85.1 bits (209), Expect = 5.030e-17
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   22 ENWLMVAPVDVAALKFAQDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAAHLAICQNPKDVWAMNAMSYVYEME 309
            E  L+  P D+ A+K  QD + FLGD+AN RD VARVLP +S    GY  +LGM +FGL ENG Y Q E     AI ++  D WA +A+++V EM+
Sbjct:  115 EAVLLDHPHDLLAVKVLQDLYFFLGDAANIRDTVARVLPNWSEAEPGYSYLLGMLSFGLEENGDYQQAERMGRGAIARDAYDPWAHHAIAHVLEMQ 210          
BLAST of mRNA_H-paniculata_contig44439.11224.1 vs. uniprot
Match: A0A140HLD5_9BURK (Uncharacterized protein n=2 Tax=Ramlibacter tataouinensis TaxID=94132 RepID=A0A140HLD5_9BURK)

HSP 1 Score: 84.0 bits (206), Expect = 1.200e-16
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   16 ILENWLMVAPVDVAALKFAQDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAAHLAICQNPKDVWAMNAMSYVYEME 309
            IL  W    P DVAAL FA     + GD+ N +    RVLP +S     YG VLGMHAFGL E+G YA+ E+    A+  NP+D WA++A+++V+EME
Sbjct:  106 ILVEW----PRDVAALLFAHLFDFYRGDALNLKRRPQRVLPHWSRAMPLYGYVLGMHAFGLEESGHYAEAEDTGRAALGVNPRDPWAVHAVTHVFEME 199          
BLAST of mRNA_H-paniculata_contig44439.11224.1 vs. uniprot
Match: A0A8J7N206_9PROT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7N206_9PROT)

HSP 1 Score: 84.0 bits (206), Expect = 1.300e-16
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   22 ENWLMVAPVDVAALKFAQDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAAHLAICQNPKDVWAMNAMSYVYEME 309
            E  L+  P D+ ALK     H +LGD+A  RD VARVLP +S +T  YG VL M AFGL E G YA+ E+A   ++  N +D W ++A+++V EM+
Sbjct:  115 EAILIEHPRDILALKLGHFTHFYLGDAAELRDSVARVLPCWSESTPDYGYVLAMRAFGLEEAGDYAEAEKAGRRSVEINREDSWGVHAVAHVLEMQ 210          
BLAST of mRNA_H-paniculata_contig44439.11224.1 vs. uniprot
Match: A0A6N8J331_9BURK (Tetratricopeptide repeat protein n=1 Tax=Ramlibacter pinisoli TaxID=2682844 RepID=A0A6N8J331_9BURK)

HSP 1 Score: 83.2 bits (204), Expect = 2.420e-16
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   16 ILENWLMVAPVDVAALKFAQDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAAHLAICQNPKDVWAMNAMSYVYEME 309
            IL  W    P DVAAL FA     + GD+ N R    RVLP +S      G VLGMHAFGL E+G YA+ E+A   A+ +NP+D WA++A+++V+EM+
Sbjct:  131 ILVRW----PRDVAALLFAHLFDFYRGDALNLRRRPQRVLPHWSPELPLSGYVLGMHAFGLEESGQYAEAEDAGRAALVRNPRDPWAVHAVTHVFEMQ 224          
BLAST of mRNA_H-paniculata_contig44439.11224.1 vs. uniprot
Match: A0A2T7PG27_POMCA (Tetratricopeptide repeat protein 38 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PG27_POMCA)

HSP 1 Score: 81.6 bits (200), Expect = 6.070e-16
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   16 ILENWLMVAPVDVAALKFAQDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAAHLAICQNPKDVWAMNAMSYVYEM 306
            + E+ L+  P D+ ALK A   +I+LGDSA  RD VAR+LP +  ++  YG +LGMHAFGL E   Y + E+ A  A+  N  D W+ + +S+V EM
Sbjct:  132 VWEDILLEHPGDILALKCAYLGYIYLGDSAQLRDSVARILPHWKTSSPYYGFLLGMHAFGLEETNMYERAEKQARKALELNRHDCWSTHTLSHVLEM 228          
BLAST of mRNA_H-paniculata_contig44439.11224.1 vs. uniprot
Match: UPI000D72FD32 (tetratricopeptide repeat protein 38-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D72FD32)

HSP 1 Score: 81.6 bits (200), Expect = 8.670e-16
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   16 ILENWLMVAPVDVAALKFAQDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAAHLAICQNPKDVWAMNAMSYVYEM 306
            + E+ L+  P D+ ALK A   +I+LGDSA  RD VAR+LP +  ++  YG +LGMHAFGL E   Y + E+ A  A+  N  D W+ + +S+V EM
Sbjct:  132 VWEDILLEHPGDILALKCAYLGYIYLGDSAQLRDSVARILPHWKTSSPYYGFLLGMHAFGLEETNMYERAEKQARKALELNRHDCWSTHTLSHVLEM 228          
BLAST of mRNA_H-paniculata_contig44439.11224.1 vs. uniprot
Match: A0A4Z0C554_9BURK (Tetratricopeptide repeat protein n=1 Tax=Ramlibacter henchirensis TaxID=204072 RepID=A0A4Z0C554_9BURK)

HSP 1 Score: 80.5 bits (197), Expect = 2.190e-15
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   16 ILENWLMVAPVDVAALKFAQDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAAHLAICQNPKDVWAMNAMSYVYEME 309
            IL  W    P DVAAL FA     + GD+ N +    RVLP +S  +  YG VLGM AFGL E+G Y + E+A   A+  NP+D WA++A+++V+EM+
Sbjct:  130 ILVQW----PRDVAALLFAHLFDFYRGDALNLKRRPQRVLPRWSPDSPFYGYVLGMAAFGLEESGHYCEAEDAGRAAVAMNPRDPWAIHAVTHVFEMQ 223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44439.11224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G511_ECTSI1.520e-3764.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0012441A5E4.260e-1948.48tetratricopeptide repeat protein n=1 Tax=Hypericib... [more]
A0A418WDR5_9PROT2.020e-1846.46Tetratricopeptide repeat protein n=1 Tax=Oleomonas... [more]
A0A5J6MR69_9PROT5.030e-1747.92Tetratricopeptide repeat protein 38 family protein... [more]
A0A140HLD5_9BURK1.200e-1646.94Uncharacterized protein n=2 Tax=Ramlibacter tataou... [more]
A0A8J7N206_9PROT1.300e-1645.83Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A6N8J331_9BURK2.420e-1646.94Tetratricopeptide repeat protein n=1 Tax=Ramlibact... [more]
A0A2T7PG27_POMCA6.070e-1644.33Tetratricopeptide repeat protein 38 n=1 Tax=Pomace... [more]
UPI000D72FD328.670e-1644.33tetratricopeptide repeat protein 38-like n=1 Tax=P... [more]
A0A4Z0C554_9BURK2.190e-1544.90Tetratricopeptide repeat protein n=1 Tax=Ramlibact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44439contigH-paniculata_contig44439:528..1584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue4.1e-32
Seed eggNOG ortholog2880.D7G511
KEGG rclassRC02795
KEGG koko:K02325
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
EggNOG OGsKOG2610@1,KOG2610@2759
EC2.7.7.7
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons2
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930338.4976707-CDS-H-paniculata_contig44439:527..7151622930338.4976707-CDS-H-paniculata_contig44439:527..715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44439 528..715 -
1691481247.8587391-CDS-H-paniculata_contig44439:527..7151691481247.8587391-CDS-H-paniculata_contig44439:527..715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44439 528..715 -
1622930338.5232313-CDS-H-paniculata_contig44439:1433..15841622930338.5232313-CDS-H-paniculata_contig44439:1433..1584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44439 1434..1584 -
1691481247.8688889-CDS-H-paniculata_contig44439:1433..15841691481247.8688889-CDS-H-paniculata_contig44439:1433..1584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44439 1434..1584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44439.11224.1prot_H-paniculata_contig44439.11224.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44439 528..1584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44439.11224.1

>prot_H-paniculata_contig44439.11224.1 ID=prot_H-paniculata_contig44439.11224.1|Name=mRNA_H-paniculata_contig44439.11224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
VQGALILENWLMVAPVDVAALKFAQDAHIFLGDSANTRDCVARVLPFFSN
TTFGYGSVLGMHAFGLAENGSYAQGEEAAHLAICQNPKDVWAMNAMSYVY
EMEVKLVCNFFY*
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mRNA from alignment at H-paniculata_contig44439:528..1584-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44439.11224.1 ID=mRNA_H-paniculata_contig44439.11224.1|Name=mRNA_H-paniculata_contig44439.11224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1057bp|location=Sequence derived from alignment at H-paniculata_contig44439:528..1584- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCAGGGGGCGTTGATTCTGGAGAATTGGTTAATGGTCGCACCGGTCGA CGTTGCAGCGTTGAAGTTTGCACAAGACGCGCATATCTTTCTGGGAGACA GCGCCAACACGCGCGATTGCGTGGCCAGAGTTCTCCCGTTCTTCAGCAAC AGTAAGTGAGAATAATTTGGCTGGGTGCGGTATTCAAGTAAATCAAAGCA GGTCGGGATGCTGTGGTTATCATGTTCAGAGGGAGAAGAGAGGTTGGTCG CGGTCTATCTAATGTATGTACGTCGATGAGACGACGTGTCACTATTATTG CCCTCCTGTAGAGCTACCCATCCAGTACGATGGACTCTAGCACCCAGTCT GGCTAGGGTTGTCGCGAGTTGCGTTAAATTTGTTATATATATCACGATGG ATTATTTCAAGGTACCCGTAACGTTGAGAAAACGTCGAAGAGATGAACGG CTGTGTCTTCTGGGGACCTTATGTATATTGACTAGTGAGGCGTTTCCGAC GTATTGTACGGTGATTGTTCTGTGGCGTATGTCTATACGTGTATCCTCCA CATGGTACATTGCTGGCAACTGTCTCTCAGTCAGTACCACTATACCACAT TGTATCAAAATCTACTTGCGGGAAGAAAAAACAATACCCAGTCCTGTTTT TGCCCAAAGCTGGAGCAAGTGGTGTGCGATAAGCACACGGCATGTGTACA AGCTCCTACTACGTACCTGTACTCCCCAGATCAAATTTGTCGGTAAAGAG CAATCGATTTTATCCCCCCCCGGAAACCTCCTGAGTATAAGTCTAACGCC TCCCGCAATGCCCATCGCCTACCACAATCGTTTGCCGTTTTCCCGTGGGC ACTATGACTCGCGCCCCAGCGACATTTGGATACGGCAGTGTACTGGGCAT GCACGCCTTTGGTCTCGCAGAAAATGGGTCGTACGCTCAGGGAGAAGAAG CAGCACACCTGGCCATCTGCCAGAATCCGAAGGATGTCTGGGCTATGAAT GCGATGTCTTACGTATACGAAATGGAGGTAAAACTCGTTTGTAATTTTTT CTATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig44439:528..1584-

>mRNA_H-paniculata_contig44439.11224.1 ID=mRNA_H-paniculata_contig44439.11224.1|Name=mRNA_H-paniculata_contig44439.11224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig44439:528..1584- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCAGGGGGCGTTGATTCTGGAGAATTGGTTAATGGTCGCACCGGTCGA
CGTTGCAGCGTTGAAGTTTGCACAAGACGCGCATATCTTTCTGGGAGACA
GCGCCAACACGCGCGATTGCGTGGCCAGAGTTCTCCCGTTCTTCAGCAAC
AGTCCAGGGGGCGTTGATTCTGGAGAATTGGTTAATGGTCGCACCGGTCG
ACGTTGCAGCGTTGAAGTTTGCACAAGACGCGCATATCTTTCTGGGAGAC
AGCGCCAACACGCGCGATTGCGTGGCCAGAGTTCTCCCGTTCTTCAGCAA
CACGACATTTGGATACGGCAGTGTACTGGGCATGCACGCCTTTGGTCTCG
CAGAAAATGGGTCGTACGCTCAGGGAGAAGAAGCAGCACACCTGGCCATC
TGCCAGAATCCGAAGGATGTCTGGGCTATGAATGCGATGTCTTACGTATA
CGAAATGGAGGTAAAACTCGTTTGTAATTTTTTCTATTAGCGACATTTGG
ATACGGCAGTGTACTGGGCATGCACGCCTTTGGTCTCGCAGAAAATGGGT
CGTACGCTCAGGGAGAAGAAGCAGCACACCTGGCCATCTGCCAGAATCCG
AAGGATGTCTGGGCTATGAATGCGATGTCTTACGTATACGAAATGGAGGT
AAAACTCGTTTGTAATTTTTTCTATTAG
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