mRNA_H-paniculata_contig44363.11209.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44363.11209.1
Unique NamemRNA_H-paniculata_contig44363.11209.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44363.11209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44363contigH-paniculata_contig44363:1374..1562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size191
Cds size180
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930336.9089036-UTR-H-paniculata_contig44363:1373..13821622930336.9089036-UTR-H-paniculata_contig44363:1373..1382Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44363 1374..1382 +
1691481247.2515516-UTR-H-paniculata_contig44363:1373..13821691481247.2515516-UTR-H-paniculata_contig44363:1373..1382Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44363 1374..1382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930336.9240623-CDS-H-paniculata_contig44363:1382..15621622930336.9240623-CDS-H-paniculata_contig44363:1382..1562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44363 1383..1562 +
1691481247.2673736-CDS-H-paniculata_contig44363:1382..15621691481247.2673736-CDS-H-paniculata_contig44363:1382..1562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44363 1383..1562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44363.11209.1prot_H-paniculata_contig44363.11209.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44363 1383..1562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44363.11209.1

>prot_H-paniculata_contig44363.11209.1 ID=prot_H-paniculata_contig44363.11209.1|Name=mRNA_H-paniculata_contig44363.11209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MDAGASVDICCFGTFQVYDSVKEVHDALADGVPRYMVTADVASLCVAGEV
SRPNAALFLV
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mRNA from alignment at H-paniculata_contig44363:1374..1562+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44363.11209.1 ID=mRNA_H-paniculata_contig44363.11209.1|Name=mRNA_H-paniculata_contig44363.11209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig44363:1374..1562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAACGACATGGATGCTGGGGCTTCTGTCGACATTTGTTGCTTCGGAAC
ATTCCAAGTGTACGACTCCGTTAAGGAGGTGCATGACGCCCTGGCTGATG
GCGTTCCTCGGTACATGGTGACGGCGGACGTGGCTTCTTTGTGTGTAGCC
GGTGAAGTGTCGCGGCCGAACGCCGCCCTGTTTTTAGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig44363:1374..1562+

>mRNA_H-paniculata_contig44363.11209.1 ID=mRNA_H-paniculata_contig44363.11209.1|Name=mRNA_H-paniculata_contig44363.11209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig44363:1374..1562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGCTGGGGCTTCTGTCGACATTTGTTGCTTCGGAACATTCCAAGT
GTACGACTCCGTTAAGGAGGTGCATGACGCCCTGGCTGATGGCGTTCCTC
GGTACATGGTGACGGCGGACGTGGCTTCTTTGTGTGTAGCCGGTGAAGTG
TCGCGGCCGAACGCCGCCCTGTTTTTAGTCATGGATGCTGGGGCTTCTGT
CGACATTTGTTGCTTCGGAACATTCCAAGTGTACGACTCCGTTAAGGAGG
TGCATGACGCCCTGGCTGATGGCGTTCCTCGGTACATGGTGACGGCGGAC
GTGGCTTCTTTGTGTGTAGCCGGTGAAGTGTCGCGGCCGAACGCCGCCCT
GTTTTTAGTC
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