mRNA_H-paniculata_contig4431.11202.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4431.11202.1
Unique NamemRNA_H-paniculata_contig4431.11202.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4431.11202.1 vs. uniprot
Match: D7FPW6_ECTSI (AN1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPW6_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 2.660e-62
Identity = 115/206 (55.83%), Postives = 133/206 (64.56%), Query Frame = 3
Query:  135 MEFHDLGKHCSAEFCNQQALSLASHFCPSSGLDFLPFTCNGCNLVFCLQHRTHATHDCTNANFNDKRVLECSACNKVLKSQPGVSRDVTLQRHMTSGCLEGVRKTRPNKLRCSAPGCRGSEFVKVSCKSCAKNFCFRHRHEDDHKCEVAAAIATTR-------RRAGPTAGGPVSNPRQAL-TGARSSTSIGQGCAVEAKAAADRR 728
            MEFHD+G HC+AE C QQ              DFLPFTC+ C  VFCL HRTHA H+CTNAN  DKRVLECS CNKVL+   GV   + L+RH+ SGC++GVRK RPNK+RCS  GCR SEFVKVSC SC +NFCF+HRHEDDHKCE A A AT R       R  G T GGP   P  +  +G + +    + C V A  AA RR
Sbjct:    1 MEFHDVGVHCAAEMCGQQ--------------DFLPFTCDACGKVFCLDHRTHAGHNCTNANAKDKRVLECSKCNKVLQRPAGVEHALLLERHLASGCVDGVRKARPNKIRCSVQGCRRSEFVKVSCGSCRRNFCFKHRHEDDHKCE-AIAEATKREHPHLQKRGLGGT-GGPKPKPSDSRPSGGKEAAGGRRPCGVAAAEAAARR 190          
BLAST of mRNA_H-paniculata_contig4431.11202.1 vs. uniprot
Match: B3RKG7_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RKG7_TRIAD)

HSP 1 Score: 118 bits (295), Expect = 1.110e-27
Identity = 56/155 (36.13%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  144 HDL---GKHCSAEFCNQQALSLASHFCPSSGLDFLPFTCNGCNLVFCLQHRTHATHDCTNANFNDKRVLECSACNKVLKSQPGVSRDVTLQRHMTSGCLEGVRKTRPNKL-RCSAPGCRGSEFVKVSCKSCAKNFCFRHRHEDDHKCEVAAAIAT 596
            HDL   G+HCS + CNQ              LDFLPFTCN C+ +FCL HR+H  H C      D ++  C  C+K+++  P ++ +  ++RH+ SGC + V     +K  +CS   CR  E +   C  C  ++C RHRH +DH C      A+
Sbjct:    3 HDLLSIGRHCSVKDCNQ--------------LDFLPFTCNDCHKIFCLNHRSHVAHQCKAFADKDVKIATCPLCDKLIRRDPKLNLNDQVERHIMSGCKDNVASEGSSKSNKCSMKQCRTHELIPFKCLRCHHDYCARHRHMEDHHCHTIPVTAS 143          
BLAST of mRNA_H-paniculata_contig4431.11202.1 vs. uniprot
Match: UPI001EB0253B (AN1-type zinc finger protein 2A-like isoform X2 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB0253B)

HSP 1 Score: 119 bits (297), Expect = 1.200e-27
Identity = 58/149 (38.93%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  135 MEFHDLGKHCSAEFCNQQALSLASHFCPSSGLDFLPFTCNGCNLVFCLQHRTHATHDCTNANFNDKRVLECSACNKVLKSQPGVSRDVTLQRHMTSGCLEGVRKTRPNKL--RCSAPGCRGSEFVKVSCKSCAKNFCFRHRHEDDHKCE 575
            MEF  LGKHC    C Q              LDFLP  C+ C+ +FC  H  + TH CT +   D +V  C  CN+ +  + G   D  + RH+ + C   + K R      +CS  GC+  E V V C  C +NFCFRHRHE DHKC+
Sbjct:    1 MEFPSLGKHCFESSCKQ--------------LDFLPMKCDACSSIFCRDHIKYDTHSCTESYKKDNQVPVCPLCNEAISVKKGDLPDAVVSRHIDNDCSSDLAKQRRKIYTNKCSFKGCKQKELVPVKCDKCHQNFCFRHRHETDHKCQ 135          
BLAST of mRNA_H-paniculata_contig4431.11202.1 vs. uniprot
Match: UPI0006150D69 (AN1-type zinc finger protein 2A-like isoform X1 n=2 Tax=Megachile rotundata TaxID=143995 RepID=UPI0006150D69)

HSP 1 Score: 120 bits (301), Expect = 1.750e-27
Identity = 56/149 (37.58%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  132 KMEFHDLGKHCSAEFCNQQALSLASHFCPSSGLDFLPFTCNGCNLVFCLQHRTHATHDCTNANFNDKRVLECSACNKVLKSQPGVSRDVTLQRHMTSGCLEGVRKTRPNKL--RCSAPGCRGSEFVKVSCKSCAKNFCFRHRHEDDHKC 572
            KMEF +LG+HCS   CN+              LDFLP  C+ C+ +FC +H +++ H C +A   D +V  C  CN  + ++ G   D+ + +HM + C   +RK R      RCS+ GC+  E V++ C  C KNFC +HRH  DH+C
Sbjct:   22 KMEFPNLGEHCSENSCNR--------------LDFLPLKCDACSAIFCAEHISYSNHSCPSAYKKDIQVPVCPLCNAPVPTKRGDPPDIAVGQHMDNECQSDLRKPRQKIFSNRCSSKGCKIKEIVQIRCSDCGKNFCLKHRHPTDHEC 156          
BLAST of mRNA_H-paniculata_contig4431.11202.1 vs. uniprot
Match: UPI001EB02C0A (AN1-type zinc finger protein 2A-like isoform X1 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB02C0A)

HSP 1 Score: 119 bits (297), Expect = 2.090e-27
Identity = 58/149 (38.93%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  135 MEFHDLGKHCSAEFCNQQALSLASHFCPSSGLDFLPFTCNGCNLVFCLQHRTHATHDCTNANFNDKRVLECSACNKVLKSQPGVSRDVTLQRHMTSGCLEGVRKTRPNKL--RCSAPGCRGSEFVKVSCKSCAKNFCFRHRHEDDHKCE 575
            MEF  LGKHC    C Q              LDFLP  C+ C+ +FC  H  + TH CT +   D +V  C  CN+ +  + G   D  + RH+ + C   + K R      +CS  GC+  E V V C  C +NFCFRHRHE DHKC+
Sbjct:    1 MEFPSLGKHCFESSCKQ--------------LDFLPMKCDACSSIFCRDHIKYDTHSCTESYKKDNQVPVCPLCNEAISVKKGDLPDAVVSRHIDNDCSSDLAKQRRKIYTNKCSFKGCKQKELVPVKCDKCHQNFCFRHRHETDHKCQ 135          
BLAST of mRNA_H-paniculata_contig4431.11202.1 vs. uniprot
Match: A0A443S8T2_9ACAR (AN1-type zinc finger protein 2A-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443S8T2_9ACAR)

HSP 1 Score: 119 bits (298), Expect = 5.690e-27
Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 3
Query:  135 MEFHDLGKHCSAEFCNQQALSLASHFCPSSGLDFLPFTCNGCNLVFCLQHRTHATHDCTNANFNDKRVLECSACNKVLKSQPGVSRDVTLQRHMTSGCLEGVRKTRPNKL---RCSAPGCRGSEFVKVSCKSCAKNFCFRHRHEDDHKCEVAAAIAT 596
            MEF DLG+HCS   C Q              LDFLPF C+ CN ++C +H  + +HDC  A+  +K V  C  CN+ +  +   + D  + RH+   C +   K + + +   +CS  GC+  E + + C  C +N+C +HRH  DHKCE A  + T
Sbjct:    1 MEFPDLGEHCSVSSCKQ--------------LDFLPFKCDACNQIYCKKHYFYTSHDCKEAHSKNKLVPTCPLCNEPVPCKRNETVDFAVSRHIDEECSDDRAKKKRDSVYSNKCSLRGCKQKEAIPIICDCCRRNYCLKHRHPSDHKCENAETVKT 143          
BLAST of mRNA_H-paniculata_contig4431.11202.1 vs. uniprot
Match: UPI001F036B4C (AN1-type zinc finger protein 2A-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F036B4C)

HSP 1 Score: 119 bits (298), Expect = 1.290e-26
Identity = 59/151 (39.07%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  135 MEFHDLGKHCSAEFCNQQALSLASHFCPSSGLDFLPFTCNGCNLVFCLQHRTHATHDCTNANFNDKRVLECSACNKVLKSQPGVSRDVTLQRHMTSGCLEGVRKT--RPNKLRCSAPGCRGSEFVKVSCKSCAKNFCFRHRHEDDHKCEVA 581
            MEF  LGKHCS   C +              LDFLP  C+ CN  FC +H ++ TH+C +A   D +V  C  CNK +  + G   D+ +  H+   CL    K   + N  RCSA GC+  E V ++C SC +N+C RHRH  DH C  A
Sbjct:    1 MEFPGLGKHCSLASCKR--------------LDFLPMNCDACNKTFCSEHISYNTHNCQSAYKKDVQVPVCPLCNKPIPVKRGEPPDIKVGEHIDRDCLSDPAKENRKLNANRCSAKGCKKRELVPITCPSCRRNYCLRHRHPQDHNCTTA 137          
BLAST of mRNA_H-paniculata_contig4431.11202.1 vs. uniprot
Match: A0A2R6WVS9_MARPO (AN1-type domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WVS9_MARPO)

HSP 1 Score: 116 bits (290), Expect = 2.050e-26
Identity = 57/152 (37.50%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  123 AGKKMEFHDLGKHCSAEFCNQQALSLASHFCPSSGLDFLPFTCNGCNLVFCLQHRTHATHDCTNANFNDKRVLECSACNKVLKSQPGVSRDVTLQRHMTSGCLEGVRKTRPNKLRCSAPGCRGSEFV--KVSCKSCAKNFCFRHRHEDDHKC 572
            +G    F  LG HC+ E+C+Q              LDFLPFTC+ C+ V+CL+HR++  H+C+  N  D  V+ C  C + +K   G S  VTL++H   G      +  P K RC  P CR    V    SCKSC    C +HR+  DH C
Sbjct:    2 SGGTEAFPTLGSHCAEEYCHQ--------------LDFLPFTCDSCSKVYCLEHRSYKAHECSKVNLKDNVVIVCPTCTRTVKKVAGESEAVTLKKHNFDGSCSSAGRPAP-KARCPVPRCREELLVLNTYSCKSCGSTVCLKHRYPTDHAC 138          
BLAST of mRNA_H-paniculata_contig4431.11202.1 vs. uniprot
Match: UPI00201EF269 (AN1-type zinc finger protein 2A-like isoform X3 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EF269)

HSP 1 Score: 118 bits (296), Expect = 2.590e-26
Identity = 58/149 (38.93%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  135 MEFHDLGKHCSAEFCNQQALSLASHFCPSSGLDFLPFTCNGCNLVFCLQHRTHATHDCTNANFNDKRVLECSACNKVLKSQPGVSRDVTLQRHMTSGCLEGVRKTRPNKL--RCSAPGCRGSEFVKVSCKSCAKNFCFRHRHEDDHKCE 575
            MEF  LGKHC    C Q              LDFLP  C+ C+ +FC  H  + TH CT +   D +V  C  CN+ +  + G   D  + RH+ + C   + K R      +CS  GC+  E V V C  C +NFCFRHRHE DHKC+
Sbjct:    1 MEFPSLGKHCFESSCKQ--------------LDFLPMKCDACSNIFCRDHIKYDTHSCTESYKKDNQVPVCPLCNEAISVKKGDLPDAVVSRHIDNDCSSDLAKQRRKIYTNKCSFKGCKQKELVPVKCDKCHQNFCFRHRHETDHKCQ 135          
BLAST of mRNA_H-paniculata_contig4431.11202.1 vs. uniprot
Match: SAP16_ORYSJ (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 n=11 Tax=Oryzinae TaxID=1648021 RepID=SAP16_ORYSJ)

HSP 1 Score: 117 bits (293), Expect = 8.620e-26
Identity = 59/147 (40.14%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  138 EFHDLGKHCSAEFCNQQALSLASHFCPSSGLDFLPFTCNGCNLVFCLQHRTHATHDCTNANFNDKRVLECSACNKVLKSQPGVSRDVTLQRHMTSGCLEGVRKTRPNKLRCSAPGCRGSEFVK--VSCKSCAKNFCFRHRHEDDHKC 572
            EF +LGKHCS   CNQ              +DFLPFTC+ C+ VFCLQHR++ +H C NAN  D  VL C  C K ++  P    ++T   H+ S C     +    K +C  PGCR +      + CK C K  C +HR   DHKC
Sbjct:    5 EFPNLGKHCSVGDCNQ--------------IDFLPFTCDRCDHVFCLQHRSYTSHQCPNANQKDVTVLICPLCAKGVRLNPNEDPNITWDTHVNSDCDPSNYQKVTKKKKCPVPGCRETLTFSNTIRCKDCTKEHCLKHRFGPDHKC 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4431.11202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPW6_ECTSI2.660e-6255.83AN1-type domain-containing protein n=2 Tax=Ectocar... [more]
B3RKG7_TRIAD1.110e-2736.13Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
UPI001EB0253B1.200e-2738.93AN1-type zinc finger protein 2A-like isoform X2 n=... [more]
UPI0006150D691.750e-2737.58AN1-type zinc finger protein 2A-like isoform X1 n=... [more]
UPI001EB02C0A2.090e-2738.93AN1-type zinc finger protein 2A-like isoform X1 n=... [more]
A0A443S8T2_9ACAR5.690e-2735.03AN1-type zinc finger protein 2A-like protein n=1 T... [more]
UPI001F036B4C1.290e-2639.07AN1-type zinc finger protein 2A-like n=1 Tax=Xenia... [more]
A0A2R6WVS9_MARPO2.050e-2637.50AN1-type domain-containing protein n=1 Tax=Marchan... [more]
UPI00201EF2692.590e-2638.93AN1-type zinc finger protein 2A-like isoform X3 n=... [more]
SAP16_ORYSJ8.620e-2640.14Zinc finger AN1 and C2H2 domain-containing stress-... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4431contigH-paniculata_contig4431:6303..9748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.3
Seed ortholog evalue2.9e-53
Seed eggNOG ortholog2880.D7FPW6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG3183@1,KOG3183@2759
Ec32 ortholog descriptionAN1-type zinc finger protein
Ec32 orthologEc-01_008420.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1651
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4431.11202.1prot_H-paniculata_contig4431.11202.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4431 6437..8903 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930336.2729712-UTR-H-paniculata_contig4431:6302..64361622930336.2729712-UTR-H-paniculata_contig4431:6302..6436Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4431 6303..6436 +
1691481247.0692303-UTR-H-paniculata_contig4431:6302..64361691481247.0692303-UTR-H-paniculata_contig4431:6302..6436Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4431 6303..6436 +
1622930336.4227922-UTR-H-paniculata_contig4431:8903..97481622930336.4227922-UTR-H-paniculata_contig4431:8903..9748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4431 8904..9748 +
1691481247.1327994-UTR-H-paniculata_contig4431:8903..97481691481247.1327994-UTR-H-paniculata_contig4431:8903..9748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4431 8904..9748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930336.2919428-CDS-H-paniculata_contig4431:6436..64911622930336.2919428-CDS-H-paniculata_contig4431:6436..6491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4431 6437..6491 +
1691481247.0806007-CDS-H-paniculata_contig4431:6436..64911691481247.0806007-CDS-H-paniculata_contig4431:6436..6491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4431 6437..6491 +
1622930336.3616207-CDS-H-paniculata_contig4431:7046..71861622930336.3616207-CDS-H-paniculata_contig4431:7046..7186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4431 7047..7186 +
1691481247.0989916-CDS-H-paniculata_contig4431:7046..71861691481247.0989916-CDS-H-paniculata_contig4431:7046..7186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4431 7047..7186 +
1622930336.3819442-CDS-H-paniculata_contig4431:7918..80951622930336.3819442-CDS-H-paniculata_contig4431:7918..8095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4431 7919..8095 +
1691481247.110906-CDS-H-paniculata_contig4431:7918..80951691481247.110906-CDS-H-paniculata_contig4431:7918..8095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4431 7919..8095 +
1622930336.4028227-CDS-H-paniculata_contig4431:8603..89031622930336.4028227-CDS-H-paniculata_contig4431:8603..8903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4431 8604..8903 +
1691481247.1234777-CDS-H-paniculata_contig4431:8603..89031691481247.1234777-CDS-H-paniculata_contig4431:8603..8903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4431 8604..8903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4431.11202.1

>prot_H-paniculata_contig4431.11202.1 ID=prot_H-paniculata_contig4431.11202.1|Name=mRNA_H-paniculata_contig4431.11202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MEFHDLGKHCSAEFCNQQALSLASHFCPSSGLDFLPFTCNGCNLVFCLQH
RTHATHDCTNANFNDKRVLECSACNKVLKSQPGVSRDVTLQRHMTSGCLE
GVRKTRPNKLRCSAPGCRGSEFVKVSCKSCAKNFCFRHRHEDDHKCEVAA
AIATTRRRAGPTAGGPVSNPRQALTGARSSTSIGQGCAVEAKAAADRRAS
AVERRTSGDRKFTDDRGAEVIAH*
back to top

mRNA from alignment at H-paniculata_contig4431:6303..9748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4431.11202.1 ID=mRNA_H-paniculata_contig4431.11202.1|Name=mRNA_H-paniculata_contig4431.11202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3446bp|location=Sequence derived from alignment at H-paniculata_contig4431:6303..9748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCAACATACACAACCCCTTGCTTTCATCACAGCCCTGAGCCAAAAGTG AAACACACAGAGATTTGTATCACGACTTGTACGCAGTTCACTGTCCTCAC CGTCCAATAGCAATCAACCGAAGCTGGGAAGAAGATGGAGTTTCATGACC TCGGCAAGCACTGCTCAGCAGAATTCTGCAACCAGCAAGGTGTGTTGTAA AACCAAGTGCGAGAGAGCGGGACGAACGTCCTGTAAACACTCCGCATCGC CGGCAGTGGTACGGCCGTTGTCTGTATTTCGTTGCCTCATTATTAGGCAC CTTGTCTTGCAACTGGCTGTACTAGTATGTTAGCGATAGCTCCCGATGTT CACAATCGCTCTTCCGCCTTCTGGTATAGCTTGTATACATTTTCCGAAGT TGTTCGCCTGATGTCTCTCTAGTCTACCGTGCATGCATTTAGCATCCAGA CTTGTGGTCGGACAAACGGTACAACCGTGTTAATAGTGGTCGTCGACTCT GCTACAGGCAACACCAAAGATAGGAAAATGAGCAGTGTAGTATCAACAGT ACACTGAGACAATCCTGACGTATGGTAGTGAACCGTACTGTGCAACAAAG GGAAAAGGACATCGGGCACTTGGTACTGTGTAATGTACTGTAGACCTGTA GAGCTGTGCAGATATTACGTTAAAATTAATTTTGCACAAATACTCCTCTG TTGTGTTGATGTCGCTCTCGTTTCGTGTTCACACTGATGGCCAGCTCTCT CTCTCGCGTCACACTTCTGTCCGTCGTCTGGCCTAGATTTCCTACCATTC ACTTGCAATGGCTGTAACCTCGTCTTCTGCCTGCAGCACCGTACTCACGC GACTCACGACTGCACCAACGCCAACTTCAACGACGTGAGTACTCGATGAA TACTGAACTTGAAAAGAAGGAAGGCTAGTGCCCTCCCTCCCTCCCTCAAT GATGGTGTCTGCCCTTTTCACCGTGTTCTCCCTCGACAGTTAAATTCAAA CGTGGGGTTGATGATCGCTTGTCCAGCAGGATAAGCAAGTGTAAATATGA TGTGTCTTCAATTGATCGCAGGCACTACAGTTGCATATATCAGATTGACT TGGCCTCACGAGGCCGTGGATTTAGCGCGGAGACAAGAATAGTTGTCTGC TGTGAACTTCATGTGAACTATACTGTGGAGGCCACTCCCTCGCCTCCGGG AACTCTCTAGGCGTCGCCCCCAGGAGTATAGAGTATCTCGGGCGGTAGTT TCGATTTCCATCAGGGGCAGAGTCCCCAATTGTTCATAGTTTAATATGCG TACTTGACTTGAATCGGAACAACATTCGACTAGTCAGATTCCTCCTTCGA AAAAATATAAACAGAAGGGAAATTGCGGACACCTTTTTCCTTTGTCTCTG CCGCATCTGCGTCGCGCGCACGTCAGCAGAGGCGTTTTACGCCAGCTCTG AAAACTATGGTATTATGAGCACTGCTGTACTACACCTATAGCTTATAATT ACGATTCTTTTTAAGACGTCGACTGCATGGTGTCACAACGTAGGGTTAGG TGTCTAAATGCACTATACCAACCGCAAAACCGTCCCACGCCCCTTTTGCT TACTGCACAAATATAGAAACGCGTGCTGGAGTGCTCCGCGTGTAACAAGG TACTCAAGTCACAGCCCGGGGTGTCACGAGATGTGACGCTCCAGCGCCAT ATGACGAGCGGATGTTTGGAGGGCGTTAGAAAAACCCGACCGAACAAGTT GAGATGTTCCGCACCAGGGTGCCGAGGGTCGGAGTTCGTGAAGGTAAGCA GTGGTTCCATTTAAACCAGAGTTCTCTGTGTGCGTGTATGTTCTCCTGTT CGAGTCAATGGACTGAACCCCTTACAGACTGGCGTAAACGCACTCTTATT TTCATAGCGTATGTAGGTAATGGGGCTATCCCGGGGGACATAAGCTCTGC TGTGAGGGAAAGGCACCGTGGGTAACAGATATTATCTGCTTGACGTAGAC GTTCTTTGGTTGCCTTTTACTTTCGTTGTCTTTTACTTTCGTTGTGAAGA GATGGACTGATCGACTGTGAACATATTAGCACCTCCGAACCTGACGGACG GGTTGTCAGGGACTAAAAAGGCTGTTCACCGATATTATGTTGCCAGCGTC CATTAGAGGAAGATAGTTGTTATCAATAGCTGTCGACGTTTCAGCTAACA GGTCGCGAAGTACTAAGTGCCTACTAGTGCGATGTTTAATATGGTGAACA CACGTGTTACCGATTCACCGCACGTAACGAATCCATGTGACTAATGCGCA GGTGTCTTGCAAAAGCTGCGCCAAGAACTTTTGCTTCAGGCATCGACACG AAGACGACCACAAGTGCGAGGTGGCAGCCGCAATCGCCACGACACGGAGA CGAGCCGGGCCAACCGCTGGCGGCCCGGTCTCCAATCCTCGGCAAGCGTT AACAGGAGCACGATCATCGACTAGTATTGGCCAGGGGTGCGCTGTGGAAG CGAAAGCAGCCGCGGACAGGCGAGCATCGGCGGTGGAGAGAAGGACCTCC GGAGACAGGAAATTTACTGACGATAGAGGAGCTGAGGTCATTGCCCATTG ATTTTGGAATTGTACGTACCGTACACAATGTAATCTGTGTTCTTGTGTAA ATGTCAGGATTGTTGAGCTGCCGTGTACGGCTGCTTCAGCGGTGCTGGAA TTTCTATGAAACTGCTGCCCGAGACGTGAATCGCATTGTTTTGATATTAT TGTGCTGTGTTGTTAGACTACGTAGTGCTTTTCGCGGGTAGACGGGTGAC GGCAGTGGCCTTCATTTCTCCGTTCTGAGTCGCAGATGATTCGCGAGATG ATGGCATACTAGTGCTCGCTTGTGATTGCTACCGCTAGGCACGAGAGGGT GTAAGAGAGGTAACGGTCATGGTATCTGTAATCATTATTGCCGATAGAGC GAGCCTGCAAACGCTGAGCTAAGGGGAAAAAATATTATTTCAATCAGGTT GGTCTGGCAAGACGGACGTAATGGGGGGTGCAGGTACGGTAGATGAAAAC CAAAAGCGACCGCAAGTCCACAGCTTCGGCGATGGACTTGACGAAATATA CCTCCCTCATCCTCATGCGGTGGTCTGGAAAACCTTCTCCCTCACACGAA GTCCCCACTCGCTCTATTGTACGGCTTGGACGACAAGACGGACCGCCATC AGCATTCTTGCGCAAGATATTGTGCATTCGATGTTGCGTGAGCATTGAAA TAATAAAGGCAGGCATGACGGCAGCGGGCTCCACGGTGCGTACGCTGCGC TGGGGAGTCTCTTCAGAGCCGAGTTGGTTTTACTCTTATTTTCTCTTCGG ACTCCTGTATTTTCACTTGCCAAGCGAATGATTCTCTGTGGACATCGGAA CGTTACACACAAGCGGAAAGAGAGGAGGCAAAGCATATCATGTTCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4431:6303..9748+

>mRNA_H-paniculata_contig4431.11202.1 ID=mRNA_H-paniculata_contig4431.11202.1|Name=mRNA_H-paniculata_contig4431.11202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig4431:6303..9748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTTTCATGACCTCGGCAAGCACTGCTCAGCAGAATTCTGCAACCA
GCAAGATGGAGTTTCATGACCTCGGCAAGCACTGCTCAGCAGAATTCTGC
AACCAGCAAGCTCTCTCTCTCGCGTCACACTTCTGTCCGTCGTCTGGCCT
AGATTTCCTACCATTCACTTGCAATGGCTGTAACCTCGTCTTCTGCCTGC
AGCACCGTACTCACGCGACTCACGACTGCACCAACGCCAACTTCAACGAC
CTCTCTCTCTCGCGTCACACTTCTGTCCGTCGTCTGGCCTAGATTTCCTA
CCATTCACTTGCAATGGCTGTAACCTCGTCTTCTGCCTGCAGCACCGTAC
TCACGCGACTCACGACTGCACCAACGCCAACTTCAACGACAAACGCGTGC
TGGAGTGCTCCGCGTGTAACAAGGTACTCAAGTCACAGCCCGGGGTGTCA
CGAGATGTGACGCTCCAGCGCCATATGACGAGCGGATGTTTGGAGGGCGT
TAGAAAAACCCGACCGAACAAGTTGAGATGTTCCGCACCAGGGTGCCGAG
GGTCGGAGTTCGTGAAGAAACGCGTGCTGGAGTGCTCCGCGTGTAACAAG
GTACTCAAGTCACAGCCCGGGGTGTCACGAGATGTGACGCTCCAGCGCCA
TATGACGAGCGGATGTTTGGAGGGCGTTAGAAAAACCCGACCGAACAAGT
TGAGATGTTCCGCACCAGGGTGCCGAGGGTCGGAGTTCGTGAAGGTGTCT
TGCAAAAGCTGCGCCAAGAACTTTTGCTTCAGGCATCGACACGAAGACGA
CCACAAGTGCGAGGTGGCAGCCGCAATCGCCACGACACGGAGACGAGCCG
GGCCAACCGCTGGCGGCCCGGTCTCCAATCCTCGGCAAGCGTTAACAGGA
GCACGATCATCGACTAGTATTGGCCAGGGGTGCGCTGTGGAAGCGAAAGC
AGCCGCGGACAGGCGAGCATCGGCGGTGGAGAGAAGGACCTCCGGAGACA
GGAAATTTACTGACGATAGAGGAGCTGAGGTCATTGCCCATTGAGTGTCT
TGCAAAAGCTGCGCCAAGAACTTTTGCTTCAGGCATCGACACGAAGACGA
CCACAAGTGCGAGGTGGCAGCCGCAATCGCCACGACACGGAGACGAGCCG
GGCCAACCGCTGGCGGCCCGGTCTCCAATCCTCGGCAAGCGTTAACAGGA
GCACGATCATCGACTAGTATTGGCCAGGGGTGCGCTGTGGAAGCGAAAGC
AGCCGCGGACAGGCGAGCATCGGCGGTGGAGAGAAGGACCTCCGGAGACA
GGAAATTTACTGACGATAGAGGAGCTGAGGTCATTGCCCATTGA
back to top