mRNA_H-paniculata_contig4428.11191.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4428.11191.1
Unique NamemRNA_H-paniculata_contig4428.11191.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4428.11191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4428contigH-paniculata_contig4428:7217..9914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1109
Cds size1107
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4428.11191.1prot_H-paniculata_contig4428.11191.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4428 7217..9912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930335.0692432-CDS-H-paniculata_contig4428:7216..73351622930335.0692432-CDS-H-paniculata_contig4428:7216..7335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4428 7217..7335 +
1691481246.5890102-CDS-H-paniculata_contig4428:7216..73351691481246.5890102-CDS-H-paniculata_contig4428:7216..7335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4428 7217..7335 +
1622930335.0964317-CDS-H-paniculata_contig4428:7580..82091622930335.0964317-CDS-H-paniculata_contig4428:7580..8209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4428 7581..8209 +
1691481246.6017606-CDS-H-paniculata_contig4428:7580..82091691481246.6017606-CDS-H-paniculata_contig4428:7580..8209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4428 7581..8209 +
1622930335.1224582-CDS-H-paniculata_contig4428:9553..99121622930335.1224582-CDS-H-paniculata_contig4428:9553..9912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4428 9554..9912 +
1691481246.6102712-CDS-H-paniculata_contig4428:9553..99121691481246.6102712-CDS-H-paniculata_contig4428:9553..9912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4428 9554..9912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4428.11191.1

>prot_H-paniculata_contig4428.11191.1 ID=prot_H-paniculata_contig4428.11191.1|Name=mRNA_H-paniculata_contig4428.11191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=369bp
EVLGKRQLTLTKCSGRDDHLLVQGDHLRRAVGGTSKANRHKMSSAPQQGG
STLPPPHISPDSPDTRTPPNPTTTTSGFYGNNTSLYGLFLTAVGGSPEIH
TAADPVSAQEEEEFWRAADDPANEHDGGSALLPPSLSRTTTTTPAPPLAQ
AASSVGHNGAGSAAPPRPAAAAASGIDIEQGGRQLNGLGSNGINHAPGVG
IHHHPENSSARSYSVAGGGNVVSEAGTTVDDYREARRSRRFFFGSESSEV
MSSSHTPATVAASRTTTIPTPSTVNHNPPRQQNPGSIGIGSGGTGSGSGS
GSHQRTFRRNSSAEAGAAGGLPFWPSLRPNGARVGEGGSAASSNSTRGSN
VGGGDGGGGGGVEDAETAR
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mRNA from alignment at H-paniculata_contig4428:7217..9914+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4428.11191.1 ID=mRNA_H-paniculata_contig4428.11191.1|Name=mRNA_H-paniculata_contig4428.11191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2698bp|location=Sequence derived from alignment at H-paniculata_contig4428:7217..9914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTCTTGGGTAAGAGGCAGCTTACACTGACCAAGTGTTCAGGCAGGGA
TGATCATCTGCTTGTTCAGGGAGACCACTTGAGGAGAGCAGTCGGAGGAA
CAAGCAAGGCCAACAGACAGTAAGTACAGCACGCAGTAGAGTGCAGACAA
CATATGCAGGAACCATCCTCTTTGTAGATTTTGCGAGCAGTGTATATTGT
ATCGTATAGTACAGTACCATCGTAGGCTCCATATCACTTGCACGCAAGCT
CGACTCATAAAACTTCAAATCAACCAGGACTGTTACACTGTGCTGCACTG
CACTGAACCGTGTTTCTTACCTCTCGTCACCATACTCCCGTCCTTACGCC
CCTCCTTCTCGCAGCAAAATGTCTTCTGCACCGCAGCAGGGCGGCAGCAC
TCTGCCTCCACCTCACATCTCTCCAGACTCTCCAGACACTCGCACCCCTC
CAAATCCCACCACCACTACTAGTGGCTTCTATGGCAACAATACCAGCCTC
TATGGCTTGTTCCTCACGGCCGTCGGTGGAAGTCCAGAAATCCACACTGC
AGCGGACCCAGTGTCCGCGCAAGAGGAAGAGGAATTCTGGAGGGCTGCCG
ATGATCCCGCCAATGAACATGACGGCGGTAGCGCGCTCCTGCCTCCGTCC
CTTTCTCGCACTACCACAACTACTCCAGCGCCGCCGCTCGCGCAAGCGGC
AAGCTCGGTAGGGCACAACGGCGCTGGTTCTGCCGCTCCTCCCCGCCCTG
CTGCTGCTGCGGCATCGGGTATCGATATCGAACAGGGTGGCCGCCAACTG
AACGGACTCGGCAGTAACGGTATTAATCATGCCCCGGGTGTTGGTATCCA
CCACCATCCCGAGAATAGCAGCGCGAGGTCTTATTCCGTGGCAGGTGGGG
GCAACGTGGTGAGTGAGGCGGGAACGACAGTGGATGATTACAGGGAAGCT
CGGCGGAGCCGAAGGTTTTTTTTCGGAAGCGAAAGCAGCGAAGGTGGGCT
ACGACACGGTAGTGCGTTCTTTGTTGTGTACGGAGTATGATACACGGGTA
AGCTGATGGCTTTGTATCAAGAGTAAAGTCGTGGGGAGGGCACATGTAGC
AAGGTGTATCATGCTCGGTCATTGGCGCTTAGACTCCAAAAGAGTTGTAT
TTAAGCACTAAATACGAGATAATACGTCAAAGTGTGGCAGCATGAGCATA
GCCAGGCAGAAATATGTATATGTTGTGCCTATCTGTCCTTTCGAGGCACA
GTACTCTGAGCTGTGCTTTCTGAGATTTATTTTTAGACACTCAGGTCATC
TGCTTGTGAGTACTCGTCCTTTGAAACCTTCGGAAACCGTTGATTTTCAA
CACACGAAGTGGATGTAAGTGTTCCACCCTTGGATAAACGTGAATACTTA
TCGTGTTCGCGACGAAAATTAGAAAGTATTCGCTTGAGTTTCATAATAAG
CTCATGTATTCCAGGTGCCCTGAACCATCCACGACTGCTAATAATAGTCG
TTAGTCGATGGACAGAGGTGGGTTCTTTATTCCACATGTCCGCTCATTCT
GAAACTCAGGCGGCTACTTTTTTTTCGTGGCGAAGATGTCAAGTATACGT
TTTTGTCCGGGGGGTGAAATCTTTCACGATATTTCAACAAGTGCCGCGTT
TCGTTGATAACAAAAACTAATACGGCTGTAGGGTTAACGCCTGGCTCGCC
CGAAACTAAGTCATCACAAGGAAAACTTGGCATTGTTCACTTGGTACATA
AATTCAACTGGTCATTCACAAACCTAAATTTCCATCGTCTGTTTACAACA
CATATTGGGTCATTTTCTGAACTGTGTGAAGCACAATCCCCAGGGGGCAC
CTTCCCAACAAATTTTCTAGATAAAAATGTTTCTGCTCAAAATACAAGCG
ACGCATTTTGTATTCACTTACCATACTTCCTCCTTCGTCTGGGTACACAA
AAATGTGGTGGGAGAATCCATTCCCCATCAGGGGTGGTATCCTCCTTCGT
GTAGACTGCTGTGCAATACATTGTGATTTGTCTTGACTCTCGAAGCAAGT
CGAAAAGAAAACCAAGTAAGACAGCAGCTGATAAGATACGGCTTCTGTTA
TTTTCGGTCTAGACGTTATTTGTACACACCCACTCCGCTGTCCACCTCGG
TATTGACCGGGGCGACTTCTAGCCCAATCCCATGACCTGGATCGCGCTCC
AAACAACTATCTGAACCATAATGCAGACTCTATCCTCTAATCCCAACCCC
GACCCGCCCGTGTGCCCCTATCCTCTAACCCGACCCGCGGTGTGGGTTCC
TATCTTCCAATCACCATTCCGTCTTGGCAAAATGCAGTAATGTCATCTTC
TCACACACCAGCAACAGTTGCAGCATCACGGACAACAACAATACCCACAC
CGTCAACAGTAAACCACAATCCGCCACGACAACAAAATCCGGGCAGCATT
GGTATCGGCAGTGGCGGCACCGGAAGTGGAAGCGGAAGCGGTTCTCATCA
AAGAACATTCAGGCGTAACAGCAGCGCCGAAGCAGGCGCGGCAGGAGGCT
TGCCGTTTTGGCCGTCCCTTCGGCCAAACGGCGCACGGGTCGGAGAAGGC
GGGTCGGCAGCTAGCAGCAATAGCACCCGCGGTTCCAACGTCGGAGGCGG
GGATGGTGGGGGGGGAGGGGGCGTAGAGGATGCCGAGACTGCAAGGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4428:7217..9914+

>mRNA_H-paniculata_contig4428.11191.1 ID=mRNA_H-paniculata_contig4428.11191.1|Name=mRNA_H-paniculata_contig4428.11191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2214bp|location=Sequence derived from alignment at H-paniculata_contig4428:7217..9914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTCTTGGGTAAGAGGCAGCTTACACTGACCAAGTGTTCAGGCAGGGA
TGATCATCTGCTTGTTCAGGGAGACCACTTGAGGAGAGCAGTCGGAGGAA
CAAGCAAGGCCAACAGACAGAAGTCTTGGGTAAGAGGCAGCTTACACTGA
CCAAGTGTTCAGGCAGGGATGATCATCTGCTTGTTCAGGGAGACCACTTG
AGGAGAGCAGTCGGAGGAACAAGCAAGGCCAACAGACACAAAATGTCTTC
TGCACCGCAGCAGGGCGGCAGCACTCTGCCTCCACCTCACATCTCTCCAG
ACTCTCCAGACACTCGCACCCCTCCAAATCCCACCACCACTACTAGTGGC
TTCTATGGCAACAATACCAGCCTCTATGGCTTGTTCCTCACGGCCGTCGG
TGGAAGTCCAGAAATCCACACTGCAGCGGACCCAGTGTCCGCGCAAGAGG
AAGAGGAATTCTGGAGGGCTGCCGATGATCCCGCCAATGAACATGACGGC
GGTAGCGCGCTCCTGCCTCCGTCCCTTTCTCGCACTACCACAACTACTCC
AGCGCCGCCGCTCGCGCAAGCGGCAAGCTCGGTAGGGCACAACGGCGCTG
GTTCTGCCGCTCCTCCCCGCCCTGCTGCTGCTGCGGCATCGGGTATCGAT
ATCGAACAGGGTGGCCGCCAACTGAACGGACTCGGCAGTAACGGTATTAA
TCATGCCCCGGGTGTTGGTATCCACCACCATCCCGAGAATAGCAGCGCGA
GGTCTTATTCCGTGGCAGGTGGGGGCAACGTGGTGAGTGAGGCGGGAACG
ACAGTGGATGATTACAGGGAAGCTCGGCGGAGCCGAAGGTTTTTTTTCGG
AAGCGAAAGCAGCGAAGCAAAATGTCTTCTGCACCGCAGCAGGGCGGCAG
CACTCTGCCTCCACCTCACATCTCTCCAGACTCTCCAGACACTCGCACCC
CTCCAAATCCCACCACCACTACTAGTGGCTTCTATGGCAACAATACCAGC
CTCTATGGCTTGTTCCTCACGGCCGTCGGTGGAAGTCCAGAAATCCACAC
TGCAGCGGACCCAGTGTCCGCGCAAGAGGAAGAGGAATTCTGGAGGGCTG
CCGATGATCCCGCCAATGAACATGACGGCGGTAGCGCGCTCCTGCCTCCG
TCCCTTTCTCGCACTACCACAACTACTCCAGCGCCGCCGCTCGCGCAAGC
GGCAAGCTCGGTAGGGCACAACGGCGCTGGTTCTGCCGCTCCTCCCCGCC
CTGCTGCTGCTGCGGCATCGGGTATCGATATCGAACAGGGTGGCCGCCAA
CTGAACGGACTCGGCAGTAACGGTATTAATCATGCCCCGGGTGTTGGTAT
CCACCACCATCCCGAGAATAGCAGCGCGAGGTCTTATTCCGTGGCAGGTG
GGGGCAACGTGGTGAGTGAGGCGGGAACGACAGTGGATGATTACAGGGAA
GCTCGGCGGAGCCGAAGGTTTTTTTTCGGAAGCGAAAGCAGCGAAGTAAT
GTCATCTTCTCACACACCAGCAACAGTTGCAGCATCACGGACAACAACAA
TACCCACACCGTCAACAGTAAACCACAATCCGCCACGACAACAAAATCCG
GGCAGCATTGGTATCGGCAGTGGCGGCACCGGAAGTGGAAGCGGAAGCGG
TTCTCATCAAAGAACATTCAGGCGTAACAGCAGCGCCGAAGCAGGCGCGG
CAGGAGGCTTGCCGTTTTGGCCGTCCCTTCGGCCAAACGGCGCACGGGTC
GGAGAAGGCGGGTCGGCAGCTAGCAGCAATAGCACCCGCGGTTCCAACGT
CGGAGGCGGGGATGGTGGGGGGGGAGGGGGCGTAGAGGATGCCGAGACTG
CAAGGTAATGTCATCTTCTCACACACCAGCAACAGTTGCAGCATCACGGA
CAACAACAATACCCACACCGTCAACAGTAAACCACAATCCGCCACGACAA
CAAAATCCGGGCAGCATTGGTATCGGCAGTGGCGGCACCGGAAGTGGAAG
CGGAAGCGGTTCTCATCAAAGAACATTCAGGCGTAACAGCAGCGCCGAAG
CAGGCGCGGCAGGAGGCTTGCCGTTTTGGCCGTCCCTTCGGCCAAACGGC
GCACGGGTCGGAGAAGGCGGGTCGGCAGCTAGCAGCAATAGCACCCGCGG
TTCCAACGTCGGAGGCGGGGATGGTGGGGGGGGAGGGGGCGTAGAGGATG
CCGAGACTGCAAGG
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