mRNA_H-paniculata_contig44212.11180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44212.11180.1
Unique NamemRNA_H-paniculata_contig44212.11180.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44212.11180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44212contigH-paniculata_contig44212:1269..1639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930333.8213587-UTR-H-paniculata_contig44212:1268..12761622930333.8213587-UTR-H-paniculata_contig44212:1268..1276Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44212 1269..1276 +
1691481246.128982-UTR-H-paniculata_contig44212:1268..12761691481246.128982-UTR-H-paniculata_contig44212:1268..1276Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44212 1269..1276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930333.8413906-CDS-H-paniculata_contig44212:1276..16391622930333.8413906-CDS-H-paniculata_contig44212:1276..1639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44212 1277..1639 +
1691481246.138718-CDS-H-paniculata_contig44212:1276..16391691481246.138718-CDS-H-paniculata_contig44212:1276..1639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44212 1277..1639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44212.11180.1prot_H-paniculata_contig44212.11180.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44212 1277..1639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44212.11180.1

>prot_H-paniculata_contig44212.11180.1 ID=prot_H-paniculata_contig44212.11180.1|Name=mRNA_H-paniculata_contig44212.11180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MNEIEFACETVAMSAYIMNENNSGTSVTRYTGRNEVDRKSEFACLCLCED
FAFACGVDPPLGHVTDTEEPPVRFSDIKKLTHKKLWHEAVRVEFEGLENL
KAWTYVDSVRKGSNVVSARWV
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mRNA from alignment at H-paniculata_contig44212:1269..1639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44212.11180.1 ID=mRNA_H-paniculata_contig44212.11180.1|Name=mRNA_H-paniculata_contig44212.11180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=371bp|location=Sequence derived from alignment at H-paniculata_contig44212:1269..1639+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGACGGATATGAACGAGATTGAGTTTGCATGCGAGACAGTAGCCATGTCA
GCCTACATTATGAACGAAAACAATTCCGGAACGTCGGTTACCCGATATAC
TGGTAGGAATGAAGTAGACCGTAAGAGTGAGTTTGCGTGTTTGTGTTTGT
GTGAAGATTTTGCTTTCGCATGTGGTGTTGACCCGCCGCTAGGTCATGTT
ACTGACACAGAGGAGCCCCCTGTTCGTTTTTCAGACATCAAGAAGCTGAC
ACATAAAAAGTTGTGGCATGAGGCAGTCAGAGTAGAGTTTGAGGGCTTGG
AAAATCTCAAAGCTTGGACTTATGTAGACAGTGTGCGGAAAGGTTCCAAT
GTTGTCAGTGCGAGATGGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig44212:1269..1639+

>mRNA_H-paniculata_contig44212.11180.1 ID=mRNA_H-paniculata_contig44212.11180.1|Name=mRNA_H-paniculata_contig44212.11180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig44212:1269..1639+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGAGATTGAGTTTGCATGCGAGACAGTAGCCATGTCAGCCTACAT
TATGAACGAAAACAATTCCGGAACGTCGGTTACCCGATATACTGGTAGGA
ATGAAGTAGACCGTAAGAGTGAGTTTGCGTGTTTGTGTTTGTGTGAAGAT
TTTGCTTTCGCATGTGGTGTTGACCCGCCGCTAGGTCATGTTACTGACAC
AGAGGAGCCCCCTGTTCGTTTTTCAGACATCAAGAAGCTGACACATAAAA
AGTTGTGGCATGAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAAAATCTC
AAAGCTTGGACTTATGTAGACAGTGTGCGGAAAGGTTCCAATGTTGTCAG
TGCGAGATGGGTAATGAACGAGATTGAGTTTGCATGCGAGACAGTAGCCA
TGTCAGCCTACATTATGAACGAAAACAATTCCGGAACGTCGGTTACCCGA
TATACTGGTAGGAATGAAGTAGACCGTAAGAGTGAGTTTGCGTGTTTGTG
TTTGTGTGAAGATTTTGCTTTCGCATGTGGTGTTGACCCGCCGCTAGGTC
ATGTTACTGACACAGAGGAGCCCCCTGTTCGTTTTTCAGACATCAAGAAG
CTGACACATAAAAAGTTGTGGCATGAGGCAGTCAGAGTAGAGTTTGAGGG
CTTGGAAAATCTCAAAGCTTGGACTTATGTAGACAGTGTGCGGAAAGGTT
CCAATGTTGTCAGTGCGAGATGGGTA
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