mRNA_H-paniculata_contig44107.11162.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44107.11162.1
Unique NamemRNA_H-paniculata_contig44107.11162.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A6H5JY75_9PHAE (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY75_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.890e-13
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 GMLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
            GML SF  CGV S  VSL+IMP+   SCGASGAIFGLYSVC+LGK+
Sbjct:  383 GMLMSFVACGVASSFVSLMIMPQTARSCGASGAIFGLYSVCVLGKM 428          
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A7S2UJQ9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJQ9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.460e-8
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 GMLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
            G++ S+  CGVVS +VSL ++PRNT S GASGA+FGL+SV I  ++
Sbjct:  189 GLVFSYIFCGVVSSLVSLAMLPRNTVSLGASGAVFGLFSVSIFSRL 234          
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A1E7FJN4_9STRA (Rhomboid-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJN4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.680e-8
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 GMLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
            G+L S+  CGVV+ I SL+++P+ T S GASGA+FGL+SV IL ++
Sbjct:   48 GLLFSYLFCGVVANITSLVLLPKYTVSLGASGAVFGLFSVSILSRL 93          
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A7S4QCI9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QCI9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.370e-8
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    1 GMLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
            G+L S+F CGV + + S++I+P+NT S GASGA+FGLY+V  L  +
Sbjct:  199 GLLFSYFFCGVFASLASIIILPKNTISIGASGAVFGLYAVSTLATL 244          
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A7S2G9J4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9J4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.110e-6
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 GMLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
            G+L +F  CGVV+ + S  I+P NT S GASGA+FGL++V I+ ++
Sbjct:  158 GLLVAFLFCGVVANLASHFILPYNTVSLGASGAVFGLFTVSIMNRL 203          
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A7S2E8G2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E8G2_TRICV)

HSP 1 Score: 50.1 bits (118), Expect = 8.260e-6
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 GMLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
            G+L S+  CGV+S +VS   +P N  S GASGA+FGL++V ++ K+
Sbjct:  177 GLLWSYSFCGVMSSLVSTFFLPTNAVSVGASGAVFGLFTVSMMAKL 222          
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A0R0GDG3_SOYBN (Rhomboid domain-containing protein n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0R0GDG3_SOYBN)

HSP 1 Score: 47.4 bits (111), Expect = 2.020e-5
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   13 SFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
            S+   GV + +VS L++PRNT S GASGA+FGL+++ +L K+
Sbjct:   32 SYILTGVGANLVSWLVLPRNTVSVGASGAVFGLFTISVLVKM 73          
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: C6T841_SOYBN (Rhomboid domain-containing protein n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=C6T841_SOYBN)

HSP 1 Score: 48.5 bits (114), Expect = 2.860e-5
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   13 SFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
            S+   GV + +VS L++PRNT S GASGA+FGL+S+ +L K+
Sbjct:  169 SYILTGVGANLVSWLVLPRNTVSVGASGAVFGLFSISVLVKM 210          
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A0L9UZP6_PHAAN (Rhomboid domain-containing protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9UZP6_PHAAN)

HSP 1 Score: 47.4 bits (111), Expect = 4.650e-5
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   13 SFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
            S+   GV + +VS L++PRNT S GASGA+FGL+++ +L K+
Sbjct:   66 SYILTGVGANLVSWLVLPRNTVSVGASGAVFGLFTISVLVKM 107          
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A371H9J5_MUCPR (Rhomboid-like protein 11, chloroplastic n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371H9J5_MUCPR)

HSP 1 Score: 47.8 bits (112), Expect = 5.390e-5
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   13 SFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
            S+   GV + +VS LI+PRNT S GASGA+FGL+++ +L K+
Sbjct:  166 SYILTGVGANLVSWLILPRNTVSVGASGAVFGLFTISVLVKM 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JY75_9PHAE2.890e-1371.74Rhomboid domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S2UJQ9_9STRA1.460e-856.52Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1E7FJN4_9STRA6.680e-854.35Rhomboid-domain-containing protein n=1 Tax=Fragila... [more]
A0A7S4QCI9_9STRA7.370e-852.17Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2G9J4_9STRA3.110e-650.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2E8G2_TRICV8.260e-647.83Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A0R0GDG3_SOYBN2.020e-550.00Rhomboid domain-containing protein n=2 Tax=Glycine... [more]
C6T841_SOYBN2.860e-552.38Rhomboid domain-containing protein n=2 Tax=Glycine... [more]
A0A0L9UZP6_PHAAN4.650e-550.00Rhomboid domain-containing protein n=1 Tax=Phaseol... [more]
A0A371H9J5_MUCPR5.390e-552.38Rhomboid-like protein 11, chloroplastic n=1 Tax=Mu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44107contigH-paniculata_contig44107:1320..1457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue4.3e-09
Seed eggNOG ortholog2880.D7G9C1
KEGG koko:K07059
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005515,GO:0019904
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGs28KX3@1,2QTDP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size138
Cds size135
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930331.4267936-UTR-H-paniculata_contig44107:1319..13221622930331.4267936-UTR-H-paniculata_contig44107:1319..1322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44107 1320..1322 +
1691481245.0618706-UTR-H-paniculata_contig44107:1319..13221691481245.0618706-UTR-H-paniculata_contig44107:1319..1322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44107 1320..1322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930331.4631631-CDS-H-paniculata_contig44107:1322..14571622930331.4631631-CDS-H-paniculata_contig44107:1322..1457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44107 1323..1457 +
1691481245.071885-CDS-H-paniculata_contig44107:1322..14571691481245.071885-CDS-H-paniculata_contig44107:1322..1457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44107 1323..1457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44107.11162.1prot_H-paniculata_contig44107.11162.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44107 1323..1457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44107.11162.1

>prot_H-paniculata_contig44107.11162.1 ID=prot_H-paniculata_contig44107.11162.1|Name=mRNA_H-paniculata_contig44107.11162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV
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mRNA from alignment at H-paniculata_contig44107:1320..1457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44107.11162.1 ID=mRNA_H-paniculata_contig44107.11162.1|Name=mRNA_H-paniculata_contig44107.11162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig44107:1320..1457+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAATGTTAAGTTCGTTCTTTACTTGCGGGGTGGTTTCTTGCATCGTGAG CCTGCTCATCATGCCGCGAAACACGTACAGCTGTGGGGCTAGCGGTGCAA TCTTCGGTCTCTACAGCGTCTGCATTCTCGGAAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig44107:1320..1457+

>mRNA_H-paniculata_contig44107.11162.1 ID=mRNA_H-paniculata_contig44107.11162.1|Name=mRNA_H-paniculata_contig44107.11162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig44107:1320..1457+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAAGTTCGTTCTTTACTTGCGGGGTGGTTTCTTGCATCGTGAGCCT
GCTCATCATGCCGCGAAACACGTACAGCTGTGGGGCTAGCGGTGCAATCT
TCGGTCTCTACAGCGTCTGCATTCTCGGAAAGGTGATGTTAAGTTCGTTC
TTTACTTGCGGGGTGGTTTCTTGCATCGTGAGCCTGCTCATCATGCCGCG
AAACACGTACAGCTGTGGGGCTAGCGGTGCAATCTTCGGTCTCTACAGCG
TCTGCATTCTCGGAAAGGTG
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