mRNA_H-paniculata_contig44107.11162.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A6H5JY75_9PHAE (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY75_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 2.890e-13 Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1
Query: 1 GMLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
GML SF CGV S VSL+IMP+ SCGASGAIFGLYSVC+LGK+
Sbjct: 383 GMLMSFVACGVASSFVSLMIMPQTARSCGASGAIFGLYSVCVLGKM 428
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A7S2UJQ9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJQ9_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.460e-8 Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 1 GMLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
G++ S+ CGVVS +VSL ++PRNT S GASGA+FGL+SV I ++
Sbjct: 189 GLVFSYIFCGVVSSLVSLAMLPRNTVSLGASGAVFGLFSVSIFSRL 234
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A1E7FJN4_9STRA (Rhomboid-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJN4_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 6.680e-8 Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 1 GMLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
G+L S+ CGVV+ I SL+++P+ T S GASGA+FGL+SV IL ++
Sbjct: 48 GLLFSYLFCGVVANITSLVLLPKYTVSLGASGAVFGLFSVSILSRL 93
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A7S4QCI9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QCI9_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 7.370e-8 Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 1 GMLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
G+L S+F CGV + + S++I+P+NT S GASGA+FGLY+V L +
Sbjct: 199 GLLFSYFFCGVFASLASIIILPKNTISIGASGAVFGLYAVSTLATL 244
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A7S2G9J4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9J4_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 3.110e-6 Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 1
Query: 1 GMLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
G+L +F CGVV+ + S I+P NT S GASGA+FGL++V I+ ++
Sbjct: 158 GLLVAFLFCGVVANLASHFILPYNTVSLGASGAVFGLFTVSIMNRL 203
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A7S2E8G2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E8G2_TRICV) HSP 1 Score: 50.1 bits (118), Expect = 8.260e-6 Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1
Query: 1 GMLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
G+L S+ CGV+S +VS +P N S GASGA+FGL++V ++ K+
Sbjct: 177 GLLWSYSFCGVMSSLVSTFFLPTNAVSVGASGAVFGLFTVSMMAKL 222
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A0R0GDG3_SOYBN (Rhomboid domain-containing protein n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0R0GDG3_SOYBN) HSP 1 Score: 47.4 bits (111), Expect = 2.020e-5 Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 13 SFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
S+ GV + +VS L++PRNT S GASGA+FGL+++ +L K+
Sbjct: 32 SYILTGVGANLVSWLVLPRNTVSVGASGAVFGLFTISVLVKM 73
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: C6T841_SOYBN (Rhomboid domain-containing protein n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=C6T841_SOYBN) HSP 1 Score: 48.5 bits (114), Expect = 2.860e-5 Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 13 SFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
S+ GV + +VS L++PRNT S GASGA+FGL+S+ +L K+
Sbjct: 169 SYILTGVGANLVSWLVLPRNTVSVGASGAVFGLFSISVLVKM 210
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A0L9UZP6_PHAAN (Rhomboid domain-containing protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9UZP6_PHAAN) HSP 1 Score: 47.4 bits (111), Expect = 4.650e-5 Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 13 SFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
S+ GV + +VS L++PRNT S GASGA+FGL+++ +L K+
Sbjct: 66 SYILTGVGANLVSWLVLPRNTVSVGASGAVFGLFTISVLVKM 107
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Match: A0A371H9J5_MUCPR (Rhomboid-like protein 11, chloroplastic n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371H9J5_MUCPR) HSP 1 Score: 47.8 bits (112), Expect = 5.390e-5 Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 13 SFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKV 138
S+ GV + +VS LI+PRNT S GASGA+FGL+++ +L K+
Sbjct: 166 SYILTGVGANLVSWLILPRNTVSVGASGAVFGLFTISVLVKM 207 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44107.11162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig44107.11162.1 >prot_H-paniculata_contig44107.11162.1 ID=prot_H-paniculata_contig44107.11162.1|Name=mRNA_H-paniculata_contig44107.11162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp MLSSFFTCGVVSCIVSLLIMPRNTYSCGASGAIFGLYSVCILGKVback to top mRNA from alignment at H-paniculata_contig44107:1320..1457+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig44107.11162.1 ID=mRNA_H-paniculata_contig44107.11162.1|Name=mRNA_H-paniculata_contig44107.11162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig44107:1320..1457+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig44107:1320..1457+ >mRNA_H-paniculata_contig44107.11162.1 ID=mRNA_H-paniculata_contig44107.11162.1|Name=mRNA_H-paniculata_contig44107.11162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig44107:1320..1457+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |