mRNA_H-paniculata_contig44063.11159.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44063.11159.1
Unique NamemRNA_H-paniculata_contig44063.11159.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A251TN47_HELAN (Putative zinc finger, CCHC-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TN47_HELAN)

HSP 1 Score: 96.7 bits (239), Expect = 2.680e-18
Identity = 100/339 (29.50%), Postives = 149/339 (43.95%), Query Frame = 1
Query:   10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVR--DLPTVARQQRIRLSGKLG----VCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
            IRC+NC + GH    C ++ +G+R +                NV +H       T     D +       E  K+   W +DSGC+  H+T  +DLF          + T D+  LDV G GDV   I   E  I     NV YV     ++LSV ++  +G +  F  +       G  I    +S +   + K+ G+++  L L  N   IP+      Q   T L H R GH+    L  + +   +    K+     VC  C  GK +++P     + R +EPL+LVH+D  GP++T S GGC + I  ID  +RK   Y L+  S+AL   K F
Sbjct:  250 IRCYNCQRLGHTARFCNKREEGERSN----------------NVLMHKDDAEDETE----DTMFMIFNTEEVVKNDC-WYLDSGCSN-HMTGNKDLFVNLNNSERREVRTGDDKRLDVLGCGDVNVKIKGHEKRIP----NVFYVAGLKHNLLSVGQLVQKGYDVCFNDK-------GCVI--HDSSGRCIGVVKMTGNKMYPLNL--NHDVIPRVCNMTTQDNST-LWHRRYGHLNLETLHDMGKNGTVNGLPKINKSEHVCEGCVFGKHARKPFSKKAKWRASEPLQLVHSDICGPMNTPSIGGCKYFITFIDDFSRKTWVYFLKLKSDALHYFKIF 550          
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A2K3N1R3_TRIPR (Retrotransposon-related protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N1R3_TRIPR)

HSP 1 Score: 86.7 bits (213), Expect = 6.010e-15
Identity = 82/339 (24.19%), Postives = 139/339 (41.00%), Query Frame = 1
Query:   10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVRDLPTVARQQRIRLSGKLGV------CSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
            I+C+NC K GH   +C   +K K   G      E A      NVA +             D V+      +     + W  D+GC+  H+T  R++   F + V++ I  AD   +D +G G+V   +   +   + +  NV YVP    +++SV ++  +G + Y      +L  +   +  +    K  + +         LR    +C             D+ L H+R GH+          +  + G   V      C+ C  GK  +   KNY   R+++ L +VH+D  GP+D  S GG  + I  +D  +R    Y ++  S+A    K+F
Sbjct:  244 IQCYNCSKFGHYANQCTASKKNKTQQG-----DEEA------NVAENTDSDD--------DDVSFMVTITDEIAGSMEWYFDTGCSN-HMTGNRNILTDFDKCVNTKIKLADSNSIDAKGIGNV---VIQRKNGKKCVIENVLYVPSMKCNLMSVGQLLDKGFKVYLEDGALQLLDSKRNLILKSAQSKNRTFKT-------QLRAIEYECLTATTKSN-----DSELWHKRYGHLNFKSLSKLNSKNMVLGLPSVIAPVETCTTCLLGKQPRDSFKNYLPMRSSDVLNIVHSDICGPIDVLSTGGNKYFITFVDEFSRMTWLYHIKAKSDAFDVFKKF 547          
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A535S533_9CHLR (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535S533_9CHLR)

HSP 1 Score: 85.5 bits (210), Expect = 1.420e-14
Identity = 81/267 (30.34%), Postives = 135/267 (50.56%), Query Frame = 1
Query:  244 WIIDSGCTGHHLTPQRDLF*--TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEA-SDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVE----VLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVRDLPTVARQQRIRLSGKLG------VCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGF--AIID--SRTRKDYTLRQTSEALWALKQ 990
            W++DSG T  H+T +RD F   TF+ +  S +  AD   ++  G G+V   ++  E  + +   NV Y+P++ ++++LS+  +A +G+ A   ++  +LY  G T+  + T RK   L  + G  ++     +   +ND    K+N   ++       H+RLGH    P    Q    L+G +       +C +C  GK  ++P +   + R T PLELVHTD  GP++T S GG  +    ID  SR +  Y L++ SEA    K+
Sbjct:  312 WVLDSGSTN-HITGRRDNFISGTFKPIKRS-LEMADRTTVEALGIGNVRLRLYNPEHELTLQ--NVLYLPQSGNNNLLSMHLLAEKGITAKMDNKNAQLY-RGKTL--QATLRKINRLYVLEGHTIKPEETAMAATTNDIDDNKDNNNARK------WHQRLGHA---PARVIQAIPELAGTVSTTTTKTICESCIMGKFIRKPFQ-LLQRRATRPLELVHTDLCGPMETTSTGGARYFMTFIDDYSRYKMVYFLKKKSEAFDKFKE 561          
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A5H2YBV8_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YBV8_PRUDU)

HSP 1 Score: 85.1 bits (209), Expect = 1.770e-14
Identity = 92/335 (27.46%), Postives = 143/335 (42.69%), Query Frame = 1
Query:   10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQR--RLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVRDLPTVARQQRIRLSGKLGVCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
            I+C+NC ++GH +  C+ K  G   S   H   E A   +  NV L              +   CA +W           +DSGC+  H+T  +  F  F+   +S +   D G+L  +G GD+  L  +  G  + I  +V YVP+ + ++LSV ++  +G    F  +Q   R  YN +    + +    +SL  I  +    L     D +   +        +T  L  +   VR LPT+  Q ++        C AC  GK  +         R + PLELVH+D  GP++T S GG  + +  ID  +RK   Y L+  SE     K F
Sbjct:  306 IQCYNCKQYGHIKSTCKNKTNGGAESSFVH---EKASERENDNVVLLAYAAAR-------EGNVCAEKW----------YLDSGCSN-HMTGNKSAFVNFKHTNNSEVRIGDGGKLVAKGCGDI--LFLSKSGEQKRI-SDVLYVPDLNYNLLSVGQLLRKGHNIQFREDQCVIRDKYNSLITKVQMSGDNMFSLN-IKYESFACLSALIKDSSWLWHLRYGHLSFNTLSLMGKQHMVRGLPTIQHQTQV--------CEACVLGKHQRNSFLTGYSWRASHPLELVHSDVCGPMNTTSTGGNRYFLTFIDDYSRKTWVYFLKYKSEVFDYFKVF 607          
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A4Y1RM74_PRUDU (Transposable element protein n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RM74_PRUDU)

HSP 1 Score: 85.1 bits (209), Expect = 1.980e-14
Identity = 92/335 (27.46%), Postives = 143/335 (42.69%), Query Frame = 1
Query:   10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQR--RLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVRDLPTVARQQRIRLSGKLGVCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
            I+C+NC ++GH +  C+ K  G   S   H   E A   +  NV L              +   CA +W           +DSGC+  H+T  +  F  F+   +S +   D G+L  +G GD+  L  +  G  + I  +V YVP+ + ++LSV ++  +G    F  +Q   R  YN +    + +    +SL  I  +    L     D +   +        +T  L  +   VR LPT+  Q ++        C AC  GK  +         R + PLELVH+D  GP++T S GG  + +  ID  +RK   Y L+  SE     K F
Sbjct:  306 IQCYNCKQYGHIKSTCKNKTNGGAESSFVH---EKASERENDNVVLLAYAAAR-------EGNVCAEKW----------YLDSGCSN-HMTGNKSAFVNFKHTNNSEVRIGDGGKLVAKGCGDI--LFLSKSGEQKRI-SDVLYVPDLNYNLLSVGQLLRKGHNIQFREDQCVIRDKYNSLITKVQMSGDNMFSLN-IKYESFACLSALIKDSSWLWHLRYGHLSFNTLSLMGKQHMVRGLPTIQHQTQV--------CEACVLGKHQRNSFLTGYSWRASHPLELVHSDVCGPMNTTSTGGNRYFLTFIDDYSRKTWVYFLKYKSEVFDYFKVF 607          
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A2Z6NAQ0_TRISU (CCHC-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NAQ0_TRISU)

HSP 1 Score: 84.3 bits (207), Expect = 2.730e-14
Identity = 84/339 (24.78%), Postives = 153/339 (45.13%), Query Frame = 1
Query:   10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHV--RDLPTVARQQRI----RLSGKLGVCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
            I+C+NC K+GH   EC+  +K K  +     T E A  A+  + +               D V+      + +   + W  D+GC+  H+T  + +   F + +++ I  A+   +  EG G+V  +I  + G    I   V YVP    +++SV ++  +G +A F  E  +L+ +   +  + T++ +    K     +EV      +C      +K     D++L H+R GH+  + L  +  +  +     +   +  C+ C  GK  + P K+    R++E L +VH+D  GP+D  S GG  + I  +D  +R    Y ++  SEA    K+F
Sbjct:  228 IQCYNCNKYGHYASECKAPKKKKSQN-----TEEEANVAQDDSTSE--------------DDVSFMVTITDETAESMVWYFDTGCSN-HMTGNKSILTDFNKCLNTRIKLANGNFIAAEGMGNV--VIQRSNGKKADIE-KVLYVPGMKCNLMSVGQLLEKGFKAVFEGETLKLFDSRQRLILK-TAQSQNRTFKTQVKTIEV------ECLATSTEDK-----DSDLWHKRYGHLNFKSLSMLNSKNMVLGLPSVIAPVDTCTTCLLGKHPRSPFKSNLPMRSSEVLNVVHSDICGPIDVLSTGGNKYFITFVDEYSRMIWLYHIKAKSEAFEVFKRF 531          
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: UPI001C3515F4 (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C3515F4)

HSP 1 Score: 84.0 bits (206), Expect = 3.010e-14
Identity = 82/318 (25.79%), Postives = 138/318 (43.40%), Query Frame = 1
Query:   13 RCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRII-FCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVRDLPTVARQQR---IRLSGKLG-VCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRK 942
            RC+NC K+GH    C  + K K  + K    +       Y                     V  A   ++S++    W +DSG +  H+  +R           S I  AD   + V G G+V+  I  ++G  + I   NV YVP    +++SV +M   G E  F  +  ++Y +   I              +  + + VL  FS    +    ++     D NL H+R+GH+     +  ++    ++LS K   +C+ C +GK ++ P K+    R +EPL+L+H+D  GP++T S GG  + +  ID  +RK
Sbjct:  214 RCYNCNKYGHLSKNCYFQHKKKTQTEKTSSVNSSKNNGYY--------------------AVFSAAETLDSNR----WYVDSGAS-RHMCRERKWMHNVSSSTVSHIKVADNKTVAVLGCGNVDLQIRDSDGKPQTIQIRNVLYVPSLITNLISVSQMTKNGCEVKFEKDYCQIYKDDKLI-----------FTALQHNNMYVLNYFSETSALLSKVDE----YDLNLWHQRMGHLNFTNLMKIEENAEGVKLSKKGNQICTTCLEGKMTRLPFKDIGT-RASEPLQLIHSDLCGPMETISLGGARYYVTFIDDFSRK 490          
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A8J6LDY4_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LDY4_TENMO)

HSP 1 Score: 83.6 bits (205), Expect = 6.750e-14
Identity = 66/227 (29.07%), Postives = 100/227 (44.05%), Query Frame = 1
Query:  244 WIIDSGCTGHHLTPQRDLF*TF--RQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVR-------DLPTVARQQRIRLSGKLGVCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDTS 897
            W IDSG T  H++     F T   R++    +A  +  ++   G+G++  L    E A+++   NV YVP+ ++++LSV+R+A  G    F  EQ  +  N I I  E  S   Y LR              +     K N+       +   H R GH         ++  +A   +I+  G   VC  C KGK S+ P+      R T  LELVHTD  GP+  +
Sbjct:  250 WYIDSGATS-HMSNNESFFKTLEKRKMRDVTVANGESAKVLEIGRGELHCLNGKDE-AVKVCLENVLYVPDLTENLLSVKRLAKTGHSVGFTGEQCEISKNNIVIAKEKLSPDMYELR------------VPHRSLAVKQNQHTPNCQHS--WHRRFGHRHPEDVQKLEIKKMATGLKIQDCGIREVCECCIKGKMSRCPIPKKATTRATSVLELVHTDLCGPMQNA 460          
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR)

HSP 1 Score: 82.0 bits (201), Expect = 1.780e-13
Identity = 75/342 (21.93%), Postives = 156/342 (45.61%), Query Frame = 1
Query:   10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYY--NGITIPFEHTSRKEYSLRKIV-GDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHV--RDLPTVARQQRIR----LSGKLGVCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVD-TSFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
            I C+ C + GH Q+EC +  KG               YA++ +     +  +                  E+++ + +W +DS C+  H+T  ++ F    + ++  +   +   L+V+G G ++   +   G I+II   V +VP+ + +++S+ ++  + ++    + +  +Y+   G+ +  E +  + + +  +  G+    +++  ++               T + H RL HV  + + T+ +++ +R    +SGK  +C  C  GK +++ +      R+TE LEL+HTD  GP+   S  G  + +  ID  TRK   Y L+   E+  A K+F
Sbjct:  258 IECYKCQQMGHYQFECPQWNKG-------------VNYAEFDDTEELVLMAKE------------EKEDQETTECNGYWFLDSACSN-HMTGTKEWFTELDENINHSVKLGNGLRLNVQGIGSIK---FEVNGIIQII-TKVYFVPQLTSNLISIGQLQEKKVKITIENGECTVYHAQRGVIMKSEMSRNRMFIVHGVKKGEHTRCMQVTEDE---------------TQVWHRRLAHVNYKAIKTMQQKEMVRGLPEVSGKAMICETCNVGKQNRENIPKKSWWRSTEKLELIHTDLCGPITPASQSGKRYVLVFIDDLTRKTWVYLLQFKHESFDAFKRF 554          
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA)

HSP 1 Score: 81.6 bits (200), Expect = 2.820e-13
Identity = 82/339 (24.19%), Postives = 150/339 (44.25%), Query Frame = 1
Query:   10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHV--RDLPTVARQQRIRLSGKLG----VCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
            ++C+NC K+G+  ++CR   K +  S               H  A+                +    +  + S  +V W +D+ C  +H+  + +LF    + V+  +   D+ ++DV+G+G V  +I    G  + I  +V YVP    +I+S+ ++   G E               ++   + +R+  S   +  + +  + + S +    K + K     D+ L H R GH+    L  +A++  +    K+     +C AC KGK  +Q  +  +  R  +PLE+VH+D AGP D  S GG  + +  ID  +R+   Y L++ SE L   K+F
Sbjct:  597 VQCYNCDKYGYYSYKCRSAPKQEERS---------------HVAAIENENGE--------SRIFLTYKGDQGSNRNV-WYLDN-CASNHMCGRMELFVELDESVNGRVTFGDDSQIDVKGKGKV--MITQKNGEKKYI-TDVYYVPALKSNIISIGQLCELGYEVTI---------KDCSLTLRNKNREVVSKVDMTRNHLFTIDIESGEVKCMKISIKD----DSWLWHLRYGHLGFSGLKLLAKENMVNGLPKINPPDHLCEACIKGKQHRQSFEVGKSRRARKPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEF 894          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A251TN47_HELAN2.680e-1829.50Putative zinc finger, CCHC-type n=2 Tax=Helianthus... [more]
A0A2K3N1R3_TRIPR6.010e-1524.19Retrotransposon-related protein n=1 Tax=Trifolium ... [more]
A0A535S533_9CHLR1.420e-1430.34DDE-type integrase/transposase/recombinase (Fragme... [more]
A0A5H2YBV8_PRUDU1.770e-1427.46Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1RM74_PRUDU1.980e-1427.46Transposable element protein n=7 Tax=Prunus dulcis... [more]
A0A2Z6NAQ0_TRISU2.730e-1424.78CCHC-type domain-containing protein n=1 Tax=Trifol... [more]
UPI001C3515F43.010e-1425.79Uncharacterized protein n=1 Tax=Manduca sexta TaxI... [more]
A0A8J6LDY4_TENMO6.750e-1429.07Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A5N6M7D6_9ASTR1.780e-1321.93Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A2G2VUS6_CAPBA2.820e-1324.19Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44063contigH-paniculata_contig44063:288..1319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue9.1e-07
Seed eggNOG ortholog225117.XP_009362851.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs389M0@33090,3GYSF@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size993
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44063.11159.1prot_H-paniculata_contig44063.11159.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44063 768..1319 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930331.0087173-UTR-H-paniculata_contig44063:287..7671622930331.0087173-UTR-H-paniculata_contig44063:287..767Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44063 288..767 +
1691481244.8739326-UTR-H-paniculata_contig44063:287..7671691481244.8739326-UTR-H-paniculata_contig44063:287..767Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44063 288..767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930331.0270936-CDS-H-paniculata_contig44063:767..9021622930331.0270936-CDS-H-paniculata_contig44063:767..902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44063 768..902 +
1691481244.8849752-CDS-H-paniculata_contig44063:767..9021691481244.8849752-CDS-H-paniculata_contig44063:767..902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44063 768..902 +
1622930331.0436058-CDS-H-paniculata_contig44063:941..13191622930331.0436058-CDS-H-paniculata_contig44063:941..1319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44063 942..1319 +
1691481244.8959088-CDS-H-paniculata_contig44063:941..13191691481244.8959088-CDS-H-paniculata_contig44063:941..1319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44063 942..1319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44063.11159.1

>prot_H-paniculata_contig44063.11159.1 ID=prot_H-paniculata_contig44063.11159.1|Name=mRNA_H-paniculata_contig44063.11159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLF
SNDCTIPKNNEKRQQVMDTNLLHERLGHVRDLPTVARQQRIRLSGKLGVC
SACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDTSFGGCGFAIIDS
RTRKDYTLRQTSEALWALKQF
back to top

mRNA from alignment at H-paniculata_contig44063:288..1319+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44063.11159.1 ID=mRNA_H-paniculata_contig44063.11159.1|Name=mRNA_H-paniculata_contig44063.11159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig44063:288..1319+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTGTGGCATCCGATGCTGGAATTGCGGCAAGCATGGACATGGGCAGTG GGAGTGCCGTGAGAAGCGCAAGGGGAAACGACTCAGCGGCAAACGACACG GCACAAGTGAACACGCGGGCTACGCAAAATATCATAATGTAGCGTTGCAC CCAGTTCGCCAACGTCACTTTACGCCCCGATGGTTGCTTGATCCCGTTGC CTGTGCGCCGCGATGGATGGAGTCATCTAAATCGCACGTACACTGGATAA TTGATTCAGGCTGCACCGGACATCACCTGACCCCGCAACGCGACCTCTTC TAAACTTTTCGCCAGGTCGTACATAGTCCCATTGCCACAGCGGACGAGGG GGAGTTGGATGTAGAGGGGCAAGGAGACGTAGAAAGTTTAATTTGGACTG CGGAAGGAGCCATTCGCATCATCTTCTGCAATGTATGTTATGTACCTGAA GCATCAGACAGTATTTTATCGGTTGAGCGGATGGCGAGCCAAGGGATGGA AGCGTATTTTGGTTCGGAACAGAGACGGTTGTATTATAATGGGATAACGA TCCCGTTCGAACACACATCGCGAAAGGAGTATTCATTACGTAAGATAGTG GGGGACGAAGTGGAGGTACAGGCTGCAAAACGGGCCATCGGAAAAAAAGT GAAGGTTCTTCGATTATTCAGCAACGACTGCACCATCCCGAAGAACAATG AGAAGAGGCAACAGGTGATGGACACCAACTTACTACACGAGCGACTTGGG CATGTTCGAGACCTTCCCACAGTCGCACGGCAACAACGCATAAGATTAAG CGGGAAGCTCGGTGTCTGCTCGGCGTGTGAAAAGGGGAAAGCGTCGAAGC AGCCGGTAAAAAACTATCGAGAAGAGCGAACAACCGAGCCGTTGGAGCTG GTGCACACTGACACAGCCGGACCGGTGGACACGTCCTTCGGAGGATGTGG CTTCGCCATCATCGACAGCAGAACGCGCAAAGACTATACCTTGCGACAAA CGTCGGAGGCGCTATGGGCCCTGAAGCAATTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig44063:288..1319+

>mRNA_H-paniculata_contig44063.11159.1 ID=mRNA_H-paniculata_contig44063.11159.1|Name=mRNA_H-paniculata_contig44063.11159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig44063:288..1319+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAGCCAAGGGATGGAAGCGTATTTTGGTTCGGAACAGAGACGGTT
GTATTATAATGGGATAACGATCCCGTTCGAACACACATCGCGAAAGGAGT
ATTCATTACGTAAGATAGTGGGGGACGAAGTGGAGATGGCGAGCCAAGGG
ATGGAAGCGTATTTTGGTTCGGAACAGAGACGGTTGTATTATAATGGGAT
AACGATCCCGTTCGAACACACATCGCGAAAGGAGTATTCATTACGTAAGA
TAGTGGGGGACGAAGTGGAGGTTCTTCGATTATTCAGCAACGACTGCACC
ATCCCGAAGAACAATGAGAAGAGGCAACAGGTGATGGACACCAACTTACT
ACACGAGCGACTTGGGCATGTTCGAGACCTTCCCACAGTCGCACGGCAAC
AACGCATAAGATTAAGCGGGAAGCTCGGTGTCTGCTCGGCGTGTGAAAAG
GGGAAAGCGTCGAAGCAGCCGGTAAAAAACTATCGAGAAGAGCGAACAAC
CGAGCCGTTGGAGCTGGTGCACACTGACACAGCCGGACCGGTGGACACGT
CCTTCGGAGGATGTGGCTTCGCCATCATCGACAGCAGAACGCGCAAAGAC
TATACCTTGCGACAAACGTCGGAGGCGCTATGGGCCCTGAAGCAATTCGT
TCTTCGATTATTCAGCAACGACTGCACCATCCCGAAGAACAATGAGAAGA
GGCAACAGGTGATGGACACCAACTTACTACACGAGCGACTTGGGCATGTT
CGAGACCTTCCCACAGTCGCACGGCAACAACGCATAAGATTAAGCGGGAA
GCTCGGTGTCTGCTCGGCGTGTGAAAAGGGGAAAGCGTCGAAGCAGCCGG
TAAAAAACTATCGAGAAGAGCGAACAACCGAGCCGTTGGAGCTGGTGCAC
ACTGACACAGCCGGACCGGTGGACACGTCCTTCGGAGGATGTGGCTTCGC
CATCATCGACAGCAGAACGCGCAAAGACTATACCTTGCGACAAACGTCGG
AGGCGCTATGGGCCCTGAAGCAATTC
back to top