mRNA_H-paniculata_contig44063.11159.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A251TN47_HELAN (Putative zinc finger, CCHC-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TN47_HELAN) HSP 1 Score: 96.7 bits (239), Expect = 2.680e-18 Identity = 100/339 (29.50%), Postives = 149/339 (43.95%), Query Frame = 1
Query: 10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVR--DLPTVARQQRIRLSGKLG----VCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
IRC+NC + GH C ++ +G+R + NV +H T D + E K+ W +DSGC+ H+T +DLF + T D+ LDV G GDV I E I NV YV ++LSV ++ +G + F + G I +S + + K+ G+++ L L N IP+ Q T L H R GH+ L + + + K+ VC C GK +++P + R +EPL+LVH+D GP++T S GGC + I ID +RK Y L+ S+AL K F
Sbjct: 250 IRCYNCQRLGHTARFCNKREEGERSN----------------NVLMHKDDAEDETE----DTMFMIFNTEEVVKNDC-WYLDSGCSN-HMTGNKDLFVNLNNSERREVRTGDDKRLDVLGCGDVNVKIKGHEKRIP----NVFYVAGLKHNLLSVGQLVQKGYDVCFNDK-------GCVI--HDSSGRCIGVVKMTGNKMYPLNL--NHDVIPRVCNMTTQDNST-LWHRRYGHLNLETLHDMGKNGTVNGLPKINKSEHVCEGCVFGKHARKPFSKKAKWRASEPLQLVHSDICGPMNTPSIGGCKYFITFIDDFSRKTWVYFLKLKSDALHYFKIF 550
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A2K3N1R3_TRIPR (Retrotransposon-related protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N1R3_TRIPR) HSP 1 Score: 86.7 bits (213), Expect = 6.010e-15 Identity = 82/339 (24.19%), Postives = 139/339 (41.00%), Query Frame = 1
Query: 10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVRDLPTVARQQRIRLSGKLGV------CSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
I+C+NC K GH +C +K K G E A NVA + D V+ + + W D+GC+ H+T R++ F + V++ I AD +D +G G+V + + + + NV YVP +++SV ++ +G + Y +L + + + K + + LR +C D+ L H+R GH+ + + G V C+ C GK + KNY R+++ L +VH+D GP+D S GG + I +D +R Y ++ S+A K+F
Sbjct: 244 IQCYNCSKFGHYANQCTASKKNKTQQG-----DEEA------NVAENTDSDD--------DDVSFMVTITDEIAGSMEWYFDTGCSN-HMTGNRNILTDFDKCVNTKIKLADSNSIDAKGIGNV---VIQRKNGKKCVIENVLYVPSMKCNLMSVGQLLDKGFKVYLEDGALQLLDSKRNLILKSAQSKNRTFKT-------QLRAIEYECLTATTKSN-----DSELWHKRYGHLNFKSLSKLNSKNMVLGLPSVIAPVETCTTCLLGKQPRDSFKNYLPMRSSDVLNIVHSDICGPIDVLSTGGNKYFITFVDEFSRMTWLYHIKAKSDAFDVFKKF 547
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A535S533_9CHLR (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535S533_9CHLR) HSP 1 Score: 85.5 bits (210), Expect = 1.420e-14 Identity = 81/267 (30.34%), Postives = 135/267 (50.56%), Query Frame = 1
Query: 244 WIIDSGCTGHHLTPQRDLF*--TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEA-SDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVE----VLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVRDLPTVARQQRIRLSGKLG------VCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGF--AIID--SRTRKDYTLRQTSEALWALKQ 990
W++DSG T H+T +RD F TF+ + S + AD ++ G G+V ++ E + + NV Y+P++ ++++LS+ +A +G+ A ++ +LY G T+ + T RK L + G ++ + +ND K+N ++ H+RLGH P Q L+G + +C +C GK ++P + + R T PLELVHTD GP++T S GG + ID SR + Y L++ SEA K+
Sbjct: 312 WVLDSGSTN-HITGRRDNFISGTFKPIKRS-LEMADRTTVEALGIGNVRLRLYNPEHELTLQ--NVLYLPQSGNNNLLSMHLLAEKGITAKMDNKNAQLY-RGKTL--QATLRKINRLYVLEGHTIKPEETAMAATTNDIDDNKDNNNARK------WHQRLGHA---PARVIQAIPELAGTVSTTTTKTICESCIMGKFIRKPFQ-LLQRRATRPLELVHTDLCGPMETTSTGGARYFMTFIDDYSRYKMVYFLKKKSEAFDKFKE 561
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A5H2YBV8_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YBV8_PRUDU) HSP 1 Score: 85.1 bits (209), Expect = 1.770e-14 Identity = 92/335 (27.46%), Postives = 143/335 (42.69%), Query Frame = 1
Query: 10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQR--RLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVRDLPTVARQQRIRLSGKLGVCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
I+C+NC ++GH + C+ K G S H E A + NV L + CA +W +DSGC+ H+T + F F+ +S + D G+L +G GD+ L + G + I +V YVP+ + ++LSV ++ +G F +Q R YN + + + +SL I + L D + + +T L + VR LPT+ Q ++ C AC GK + R + PLELVH+D GP++T S GG + + ID +RK Y L+ SE K F
Sbjct: 306 IQCYNCKQYGHIKSTCKNKTNGGAESSFVH---EKASERENDNVVLLAYAAAR-------EGNVCAEKW----------YLDSGCSN-HMTGNKSAFVNFKHTNNSEVRIGDGGKLVAKGCGDI--LFLSKSGEQKRI-SDVLYVPDLNYNLLSVGQLLRKGHNIQFREDQCVIRDKYNSLITKVQMSGDNMFSLN-IKYESFACLSALIKDSSWLWHLRYGHLSFNTLSLMGKQHMVRGLPTIQHQTQV--------CEACVLGKHQRNSFLTGYSWRASHPLELVHSDVCGPMNTTSTGGNRYFLTFIDDYSRKTWVYFLKYKSEVFDYFKVF 607
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A4Y1RM74_PRUDU (Transposable element protein n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RM74_PRUDU) HSP 1 Score: 85.1 bits (209), Expect = 1.980e-14 Identity = 92/335 (27.46%), Postives = 143/335 (42.69%), Query Frame = 1
Query: 10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQR--RLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVRDLPTVARQQRIRLSGKLGVCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
I+C+NC ++GH + C+ K G S H E A + NV L + CA +W +DSGC+ H+T + F F+ +S + D G+L +G GD+ L + G + I +V YVP+ + ++LSV ++ +G F +Q R YN + + + +SL I + L D + + +T L + VR LPT+ Q ++ C AC GK + R + PLELVH+D GP++T S GG + + ID +RK Y L+ SE K F
Sbjct: 306 IQCYNCKQYGHIKSTCKNKTNGGAESSFVH---EKASERENDNVVLLAYAAAR-------EGNVCAEKW----------YLDSGCSN-HMTGNKSAFVNFKHTNNSEVRIGDGGKLVAKGCGDI--LFLSKSGEQKRI-SDVLYVPDLNYNLLSVGQLLRKGHNIQFREDQCVIRDKYNSLITKVQMSGDNMFSLN-IKYESFACLSALIKDSSWLWHLRYGHLSFNTLSLMGKQHMVRGLPTIQHQTQV--------CEACVLGKHQRNSFLTGYSWRASHPLELVHSDVCGPMNTTSTGGNRYFLTFIDDYSRKTWVYFLKYKSEVFDYFKVF 607
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A2Z6NAQ0_TRISU (CCHC-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NAQ0_TRISU) HSP 1 Score: 84.3 bits (207), Expect = 2.730e-14 Identity = 84/339 (24.78%), Postives = 153/339 (45.13%), Query Frame = 1
Query: 10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHV--RDLPTVARQQRI----RLSGKLGVCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
I+C+NC K+GH EC+ +K K + T E A A+ + + D V+ + + + W D+GC+ H+T + + F + +++ I A+ + EG G+V +I + G I V YVP +++SV ++ +G +A F E +L+ + + + T++ + K +EV +C +K D++L H+R GH+ + L + + + + + C+ C GK + P K+ R++E L +VH+D GP+D S GG + I +D +R Y ++ SEA K+F
Sbjct: 228 IQCYNCNKYGHYASECKAPKKKKSQN-----TEEEANVAQDDSTSE--------------DDVSFMVTITDETAESMVWYFDTGCSN-HMTGNKSILTDFNKCLNTRIKLANGNFIAAEGMGNV--VIQRSNGKKADIE-KVLYVPGMKCNLMSVGQLLEKGFKAVFEGETLKLFDSRQRLILK-TAQSQNRTFKTQVKTIEV------ECLATSTEDK-----DSDLWHKRYGHLNFKSLSMLNSKNMVLGLPSVIAPVDTCTTCLLGKHPRSPFKSNLPMRSSEVLNVVHSDICGPIDVLSTGGNKYFITFVDEYSRMIWLYHIKAKSEAFEVFKRF 531
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: UPI001C3515F4 (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C3515F4) HSP 1 Score: 84.0 bits (206), Expect = 3.010e-14 Identity = 82/318 (25.79%), Postives = 138/318 (43.40%), Query Frame = 1
Query: 13 RCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRII-FCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVRDLPTVARQQR---IRLSGKLG-VCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRK 942
RC+NC K+GH C + K K + K + Y V A ++S++ W +DSG + H+ +R S I AD + V G G+V+ I ++G + I NV YVP +++SV +M G E F + ++Y + I + + + VL FS + ++ D NL H+R+GH+ + ++ ++LS K +C+ C +GK ++ P K+ R +EPL+L+H+D GP++T S GG + + ID +RK
Sbjct: 214 RCYNCNKYGHLSKNCYFQHKKKTQTEKTSSVNSSKNNGYY--------------------AVFSAAETLDSNR----WYVDSGAS-RHMCRERKWMHNVSSSTVSHIKVADNKTVAVLGCGNVDLQIRDSDGKPQTIQIRNVLYVPSLITNLISVSQMTKNGCEVKFEKDYCQIYKDDKLI-----------FTALQHNNMYVLNYFSETSALLSKVDE----YDLNLWHQRMGHLNFTNLMKIEENAEGVKLSKKGNQICTTCLEGKMTRLPFKDIGT-RASEPLQLIHSDLCGPMETISLGGARYYVTFIDDFSRK 490
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A8J6LDY4_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LDY4_TENMO) HSP 1 Score: 83.6 bits (205), Expect = 6.750e-14 Identity = 66/227 (29.07%), Postives = 100/227 (44.05%), Query Frame = 1
Query: 244 WIIDSGCTGHHLTPQRDLF*TF--RQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHVR-------DLPTVARQQRIRLSGKLGVCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDTS 897
W IDSG T H++ F T R++ +A + ++ G+G++ L E A+++ NV YVP+ ++++LSV+R+A G F EQ + N I I E S Y LR + K N+ + H R GH ++ +A +I+ G VC C KGK S+ P+ R T LELVHTD GP+ +
Sbjct: 250 WYIDSGATS-HMSNNESFFKTLEKRKMRDVTVANGESAKVLEIGRGELHCLNGKDE-AVKVCLENVLYVPDLTENLLSVKRLAKTGHSVGFTGEQCEISKNNIVIAKEKLSPDMYELR------------VPHRSLAVKQNQHTPNCQHS--WHRRFGHRHPEDVQKLEIKKMATGLKIQDCGIREVCECCIKGKMSRCPIPKKATTRATSVLELVHTDLCGPMQNA 460
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR) HSP 1 Score: 82.0 bits (201), Expect = 1.780e-13 Identity = 75/342 (21.93%), Postives = 156/342 (45.61%), Query Frame = 1
Query: 10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYY--NGITIPFEHTSRKEYSLRKIV-GDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHV--RDLPTVARQQRIR----LSGKLGVCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVD-TSFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
I C+ C + GH Q+EC + KG YA++ + + + E+++ + +W +DS C+ H+T ++ F + ++ + + L+V+G G ++ + G I+II V +VP+ + +++S+ ++ + ++ + + +Y+ G+ + E + + + + + G+ +++ ++ T + H RL HV + + T+ +++ +R +SGK +C C GK +++ + R+TE LEL+HTD GP+ S G + + ID TRK Y L+ E+ A K+F
Sbjct: 258 IECYKCQQMGHYQFECPQWNKG-------------VNYAEFDDTEELVLMAKE------------EKEDQETTECNGYWFLDSACSN-HMTGTKEWFTELDENINHSVKLGNGLRLNVQGIGSIK---FEVNGIIQII-TKVYFVPQLTSNLISIGQLQEKKVKITIENGECTVYHAQRGVIMKSEMSRNRMFIVHGVKKGEHTRCMQVTEDE---------------TQVWHRRLAHVNYKAIKTMQQKEMVRGLPEVSGKAMICETCNVGKQNRENIPKKSWWRSTEKLELIHTDLCGPITPASQSGKRYVLVFIDDLTRKTWVYLLQFKHESFDAFKRF 554
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA) HSP 1 Score: 81.6 bits (200), Expect = 2.820e-13 Identity = 82/339 (24.19%), Postives = 150/339 (44.25%), Query Frame = 1
Query: 10 IRCWNCGKHGHGQWECREKRKGKRLSGKRHGTSEHAGYAKYHNVALHPVRQRHFTPRWLLDPVACAPRWMESSKSHVHWIIDSGCTGHHLTPQRDLF*TFRQVVHSPIATADEGELDVEGQGDVESLIWTAEGAIRIIFCNVCYVPEASDSILSVERMASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFSNDCTIPKNNEKRQQVMDTNLLHERLGHV--RDLPTVARQQRIRLSGKLG----VCSACEKGKASKQPVKNYREERTTEPLELVHTDTAGPVDT-SFGGCGFAI--IDSRTRKD--YTLRQTSEALWALKQF 993
++C+NC K+G+ ++CR K + S H A+ + + + S +V W +D+ C +H+ + +LF + V+ + D+ ++DV+G+G V +I G + I +V YVP +I+S+ ++ G E ++ + +R+ S + + + + + S + K + K D+ L H R GH+ L +A++ + K+ +C AC KGK +Q + + R +PLE+VH+D AGP D S GG + + ID +R+ Y L++ SE L K+F
Sbjct: 597 VQCYNCDKYGYYSYKCRSAPKQEERS---------------HVAAIENENGE--------SRIFLTYKGDQGSNRNV-WYLDN-CASNHMCGRMELFVELDESVNGRVTFGDDSQIDVKGKGKV--MITQKNGEKKYI-TDVYYVPALKSNIISIGQLCELGYEVTI---------KDCSLTLRNKNREVVSKVDMTRNHLFTIDIESGEVKCMKISIKD----DSWLWHLRYGHLGFSGLKLLAKENMVNGLPKINPPDHLCEACIKGKQHRQSFEVGKSRRARKPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEF 894 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44063.11159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig44063.11159.1 >prot_H-paniculata_contig44063.11159.1 ID=prot_H-paniculata_contig44063.11159.1|Name=mRNA_H-paniculata_contig44063.11159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp MASQGMEAYFGSEQRRLYYNGITIPFEHTSRKEYSLRKIVGDEVEVLRLFback to top mRNA from alignment at H-paniculata_contig44063:288..1319+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig44063.11159.1 ID=mRNA_H-paniculata_contig44063.11159.1|Name=mRNA_H-paniculata_contig44063.11159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig44063:288..1319+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig44063:288..1319+ >mRNA_H-paniculata_contig44063.11159.1 ID=mRNA_H-paniculata_contig44063.11159.1|Name=mRNA_H-paniculata_contig44063.11159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig44063:288..1319+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |