mRNA_H-paniculata_contig44044.11156.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 136 bits (343), Expect = 8.920e-32 Identity = 109/346 (31.50%), Postives = 165/346 (47.69%), Query Frame = 1
Query: 97 RCFICRSKDHLQRDCP------NVYCRRCGKRGHES---------IASYITSTSTIGKEEVLS-------------MDCEGLEYREVGGMETSICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSLGKFSDVGHEYRCSREGLTL--KQGE-----RFGSLDGMRGSRVCPE-DSALATIALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTG-ELRVCSGCTMAKGLRKPISKAPAPRAVKILGLTYVDTCGLKGVLGVGGVRFMLIFRDSF*RKSTVYFMRSKSEVDRYLKQY 1023
RCF C K H C N C C GH+ +A ++ ++ + ++ + G+E + G M + D+GAT M ++D +YQ+CN V+ G L I G G + + + + + V + + + A VP + +L+SL ++ GH Y GL L K G+ + G L + G + PE D+A A I + +AT D+N FH S GHA+E LLR TAKQ+GV LTG L C+GC+MAKG K + + RAVK L ++D G +GG + LI R R + V+F++ KSE L+Q+
Sbjct: 468 RCFTCGLKGHKSFQCETKESDYNPQCEHCLGWGHKKEKCPTEAAVLAEVVSDVDSVENQAYMAEATQPGECGRTVDLGLVGVEEQGQGVMRY-VADSGATCSMFRSADGFKNYQECNRRVKGIGGEFLRILGYGDVTVVLQSEGQEVPVPIKRAAHVPGMDLNLISLTSLTEEGHTYAGKPGGLVLTTKAGKEVWFPQLGKLLSLWGYQTEPEVDTACAAIIVPG-EAKAATPTDLNEFHNSHGHAHERLLRLTAKQQGVELTGGPLLSCTGCSMAKGQVKAVQRFTDTRAVKKLFRVFIDLGGRMQFHSIGGRWYTLIIRCDATRWTRVFFLKRKSEAADALEQF 811
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5KSM6_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM6_9PHAE) HSP 1 Score: 114 bits (284), Expect = 2.580e-24 Identity = 90/280 (32.14%), Postives = 127/280 (45.36%), Query Frame = 1
Query: 97 RCFICRSKDHLQRDCPNVYCRRCGKRG-----------HESI---------ASYITSTSTIGKEEVLSMDCEGLEYREVG--GMETS-----ICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSLGKFSDVG--------HEYRCSREGLTLKQGERFGSLDGMRGSRVCPEDSALATI---ALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGL 822
RCF C +K H +CP R E++ AS + + +E ++ D G ++ VG G+E + + D GAT HM N+D Y+ C+ VR+A G I G G + + + L +VA VP L ++L+SL D G HE R G + R G+L G R E + A A + S+T +DIN FHC++GH++E LLR TAKQ+G L GELR C GC+ AKGL
Sbjct: 290 RCFRCGNKGHQVANCPESKPVRXXXXXXXXXXXXXXXTEEAVLVVEVPAGRASADATALDVAEEALVVGDISGECHKVVGRGGVEEARRGRYVADTGATTHMFANTDGFVHYEDCDRRVRVAAGETFSIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHTEHACAAIAPGNAKAPSXKASSTPVDINDFHCAYGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGL 569
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5K0G7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G7_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.510e-23 Identity = 86/261 (32.95%), Postives = 129/261 (49.43%), Query Frame = 1
Query: 277 GMETSICDNGATKHMTHNSDFLSDYQQCNG---HVRLADGNRLPIEGVGMLFLQFRFDSE-----VVLMKLTQVAFVPLLSHHLLSLGKFS---DVGHEYR--CSREGLTLKQGERFGSLDGMRGSRVCPEDSALATIALSRLPIH------SATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRAVKILGLTYVDTCGLKGVLGVGGVRFMLIFRDSF*RKSTVYFMRSKSEV 1002
G E + D+GA+ T +S + D Q +V + DG L ++ +G + L F + E + +KLT V+ V LS +L S S + ++ R + GL + E+ + MR P D + + + LP + +DIN FH S HA E LLRETA+QRG+VLTG+L C+ C AKG R + + P RA K LG ++D CG V +GG ++ + DS R + VY +R KS+
Sbjct: 227 GSERWVADSGASNSFTDSSLHMYDLQAIPASRKYVVVGDGRMLEVQAIGSINLSFFQEDENGEKTTMCVKLTDVSAVESLSFNLFSTHAVSLKQPILYDERGATQQNGLLFAREEKASAAYAMR----LPYDPSATIVDPAALPAFVTAPDSAPASVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPL-VPSLGGNLYLFVAVDSASRWNKVYGLRRKSDA 482
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 111 bits (277), Expect = 3.760e-23 Identity = 80/248 (32.26%), Postives = 121/248 (48.79%), Query Frame = 1
Query: 280 METSICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLS-LGKFSDVGHEYRCSREG-LTLKQGE-RFGSLDGMRGSRVCPEDSALATIALSRL----PIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRAVKILGLTYVDTCGLKGVLGVGGVRFMLIFRDSF*RKSTVYFMRSKSEV 1002
+E D G HMT + + D + C+ V G I G L L F M+L V + P L ++L S +F +G +T +G+ F + DGM + A L+ L P H T MD+N FH + H+++ LLR TAK+ G L GE+ C+GC+MAK ++K I++ R+ K LG +VD G K V VGG + +I +D F R++ +YF++ KS+
Sbjct: 522 VEDWYADTGTAFHMTDSLACMKDLKPCHKSVNGIGGVSCEISFSGTLELVFVTADSEFSMELKNVLYSPNLGYNLFSPSAEFDGESWNGLGGPDGVMTAFKGQVTFQNFDGMLIASAYRLGEASVGTVLAALTPSNPKHKTT-MDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDA 768
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 109 bits (273), Expect = 1.270e-22 Identity = 79/248 (31.85%), Postives = 121/248 (48.79%), Query Frame = 1
Query: 280 METSICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLS-LGKFSDVGHEYRCSREG-LTLKQGE-RFGSLDGMRGSRVCPEDSALATIALSRL----PIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRAVKILGLTYVDTCGLKGVLGVGGVRFMLIFRDSF*RKSTVYFMRSKSEV 1002
+E D G HMT + + D + C+ V G I G L L F ++L V + P L ++L S +F +G +T +G+ F + DGM + A L+ L P H T MD+N FH + H+++ LLR TAK+ G L GE+ C+GC+MAK ++K I++ R+ K LG +VD G K V VGG + +I +D F R++ +YF++ KS+
Sbjct: 229 VEDWYADTGTAFHMTDSLACMKDLKPCHKSVNGIGGVSCEISFSGTLELVFVTADSEFSVELKNVLYSPNLGYNLFSPSAEFDGESWNGLGGPDGVMTAFKGQVTFQNFDGMLIASAYRLGEASVGTVLAALTPSNPKHKTT-MDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDA 475
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE) HSP 1 Score: 104 bits (260), Expect = 5.980e-21 Identity = 87/289 (30.10%), Postives = 130/289 (44.98%), Query Frame = 1
Query: 97 RCFICRSKDHLQRDCPN---VYCRRCGKRGHESIASYITSTSTIGKEEVLSMDCEGLEYREV-----------------GGMETS-----ICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNR-LPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSL--------GKFSDVGHEYRCSREGLTLKQGERFGSLDGMRGSRV-CPEDSALATIALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRA 858
RCF C K H C + C +C GH+ S +S + E+ +D L+ E GG+E + + D GAT HM +++ +Y +C+ + +A G + I G G + + + L +VA VP L+++L+SL G+ + E G +G L G R+ + A A IA + T +DIN FHC+ GH++E LL+ TAKQ+GV L G+LR C GC+ AKGL KPI + RA
Sbjct: 393 RCFRCGEKGHQAAACTKPEPLRCEKCLGYGHDK--SKCSSEQAVLAVELPVLDATALDVAEEALVVRDFTGEWNRVVDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDSGRELACAIIAPGNAKANR-TPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 678
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE) HSP 1 Score: 104 bits (260), Expect = 6.360e-21 Identity = 87/289 (30.10%), Postives = 130/289 (44.98%), Query Frame = 1
Query: 97 RCFICRSKDHLQRDCPN---VYCRRCGKRGHESIASYITSTSTIGKEEVLSMDCEGLEYREV-----------------GGMETS-----ICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNR-LPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSL--------GKFSDVGHEYRCSREGLTLKQGERFGSLDGMRGSRV-CPEDSALATIALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRA 858
RCF C K H C + C +C GH+ S +S + E+ +D L+ E GG+E + + D GAT HM +++ +Y +C+ + +A G + I G G + + + L +VA VP L+++L+SL G+ + E G +G L G R+ + A A IA + T +DIN FHC+ GH++E LL+ TAKQ+GV L G+LR C GC+ AKGL KPI + RA
Sbjct: 773 RCFRCGEKGHQAAACTKPEPLRCEKCLGYGHDK--SKCSSEQAVLAVELPVLDATALDVAEEALVVRDFTGEWNRVVDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDSGRELACAIIAPGNAKANR-TPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 1058
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE) HSP 1 Score: 104 bits (260), Expect = 6.600e-21 Identity = 87/289 (30.10%), Postives = 130/289 (44.98%), Query Frame = 1
Query: 97 RCFICRSKDHLQRDCPN---VYCRRCGKRGHESIASYITSTSTIGKEEVLSMDCEGLEYREV-----------------GGMETS-----ICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNR-LPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSL--------GKFSDVGHEYRCSREGLTLKQGERFGSLDGMRGSRV-CPEDSALATIALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRA 858
RCF C K H C + C +C GH+ S +S + E+ +D L+ E GG+E + + D GAT HM +++ +Y +C+ + +A G + I G G + + + L +VA VP L+++L+SL G+ + E G +G L G R+ + A A IA + T +DIN FHC+ GH++E LL+ TAKQ+GV L G+LR C GC+ AKGL KPI + RA
Sbjct: 871 RCFRCGEKGHQAAACTKPEPLRCEKCLGYGHDK--SKCSSEQAVLAVELPVLDATALDVAEEALVVRDFTGEWNRVVDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRINSGRELACAIIAPGNAKANR-TPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 1156
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 102 bits (254), Expect = 3.630e-20 Identity = 83/243 (34.16%), Postives = 121/243 (49.79%), Query Frame = 1
Query: 322 THNSDFLSDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSLGKFSDVGHEYRCSREGLTL--KQGE-----RFGSLDGMRGSRVCPE-DSALATIALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTG-ELRVCSGCTMAKGLRKPISKAPAPRAVKILGLTYVDTCGLKGVLGVGGVRFMLIFRDSF*RKSTVYFMRSKSEVDRYLKQY 1023
T SD+ + C G + + P E + +EV + + + VP + +L+SL ++ GH Y GL L K G+ + G L + G + PE D+A A I + +AT D+N FH S GHA+E LLR TAKQ+GV LTG L C+GC+MAKG K + + RAVK L ++D G +GG + LI R R + V+F++ KSE L+Q+
Sbjct: 98 TKESDYNPQCEHCLGWGHKKE--KCPTEAAVL--------AEVASVVVPLIXHVPGMDLNLISLTSLTEEGHTYAGKPGGLVLTTKAGKEVWFPQLGKLLSLWGYQTEPEVDTACAAIIVPG-EAKAATPTDLNEFHNSHGHAHERLLRLTAKQQGVELTGGPLLSCTGCSMAKGQVKAVQRFTDTRAVKKLFRVFIDLGGRMQFHSIGGRWYTLIIRCDATRWTRVFFLKRKSEAADALEQF 329
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE) HSP 1 Score: 101 bits (252), Expect = 7.160e-20 Identity = 86/288 (29.86%), Postives = 130/288 (45.14%), Query Frame = 1
Query: 97 RCFICRSKDHLQRDCPN---VYCRRCGKRGHESIASYITSTSTIGKEEVLSMDCEGLEYREV-----------------GGMETS-----ICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSL--------GKFSDVGHEYRCSREGLTLKQGERFGSLDGMRGSRV-CPEDSALATIALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRA 858
RCF C K H C + C +C GH+ S +S + E+ +D L+ E GG+E + + D GAT HM +++ +Y +C+ + +A G + + R + +L+K +VA VP L+++L+SL G+ + E G +G L G R+ + A A IA + T +DIN FHC+ GH++E LL+ TAKQ+GV L G+LR C GC+ AKGL KPI + RA
Sbjct: 792 RCFRCGEKGHQAAACTKPEPLRCEKCLGYGHDK--SKCSSEQAVLAVELPVLDATALDVAEEALVVRDFTGEWNRVVDRGGVEQARQERFVADTGATNHMFPSANAFENYNECDRRLSVAAGKQ------AFAIVGSRVGTIDLLLK--RVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDSGRELACAIIAPGNAKANR-TPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 1068 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig44044.11156.1 >prot_H-paniculata_contig44044.11156.1 ID=prot_H-paniculata_contig44044.11156.1|Name=mRNA_H-paniculata_contig44044.11156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=240bp MDCEGLEYREVGGMETSICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNback to top mRNA from alignment at H-paniculata_contig44044:16..1052- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig44044.11156.1 ID=mRNA_H-paniculata_contig44044.11156.1|Name=mRNA_H-paniculata_contig44044.11156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1037bp|location=Sequence derived from alignment at H-paniculata_contig44044:16..1052- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig44044:16..1052- >mRNA_H-paniculata_contig44044.11156.1 ID=mRNA_H-paniculata_contig44044.11156.1|Name=mRNA_H-paniculata_contig44044.11156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at H-paniculata_contig44044:16..1052- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |