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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 106.7 |
| Seed ortholog evalue | 8.8e-21 |
| Seed eggNOG ortholog | 2880.D7FZM5 |
| KEGG ko | ko:K17576 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | interleukin-8 biosynthetic process |
| EggNOG OGs | KOG4308@1,KOG4308@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01009 |
| Exons | 3 |
| Model size | 412 |
| Cds size | 411 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig440.11149.1 >prot_H-paniculata_contig440.11149.1 ID=prot_H-paniculata_contig440.11149.1|Name=mRNA_H-paniculata_contig440.11149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
RYLGLAGNAIGPCGTQAVLEVMGPALSCVIDALPAGGRQSKADEASSLAC
SVAGLFVDLDGCCLERKLVDGESLAKASNATMFDPSAPNDVYRLDLSNTF
DRHVARQLQRLARGQAGMCWIQPKLNKKPFPFPIENP back to topmRNA from alignment at H-paniculata_contig440:11896..13452+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig440.11149.1 ID=mRNA_H-paniculata_contig440.11149.1|Name=mRNA_H-paniculata_contig440.11149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1557bp|location=Sequence derived from alignment at H-paniculata_contig440:11896..13452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATATCTTGGGCTGGCAGGCAACGCCATAGGCCCGTGCGGAACCCAGGC
GGTACTAGAGGTCATGGGACCAGCGTTATCGTGCGTTATTGACGCTCTTC
CAGCGGGGGGAAGGCAGAGCAAGGCGGACGAAGCTAGCTCTCTTGCTTGT
AGCGTAGCTGGGCTCTTCGTGGATTTGGATGGGTGCTGCCTGGAGCGTAA
ACTAGTCGACGGGGAGTCGCTGGCAAAGGCATCAAACGCAACTATGTTTG
ATCCTTCCGCGCCCAATGATGTGTACAGGTGAGTGTGAGCGAACATCCAG
GGTAAGGGCAAGAGAACGAGAAATTTAGTTTTGGGGTCGAATTGGTTCAA
GATGTATCAAGCACTTACAAACGTTTCGACCACAGGTTACACGACACGCA
TACCCAAGTCGCGCTGGGTGCATCGAGCAAGCGAGCAAGTACAGAGAAGG
AGCCAATTTTACGCTAAATATACTTCAAGTTTGCATTTTGCTGATACCTG
AGCAGAGGGTTGGCTGGGACACAATGACTGTGGGTTCGTTGACGTAGGCT
ACGAACCGCAATGAATTCGATCCCCTTGCGCCCAATTAAAAATATTACAA
CTCTATCCACAGACGGAAAACAAAAGGTATCCGCAGTGTTCCTGTTGGCC
AGATTTGTTGAAAGGAGCAGTCTGATCGGTCCAAAATCCATTTCTCTCTA
CAGATCGACGTTTGAGGGGGGTATCTGTCCTCGACAGGCGGTAGGGGATT
TACTCCTGCAAAAAAGGTGGACACTACATATATTTTGGCACGAACATATC
CATAGGTATTGAGGAAGGGAGTGGTCAGCAGCGAATGTGCCAGAACGACG
ATACTTGACCCCGTGTTCCAGGCGGACTGAGTAGGCGGCAGAGTGCTACG
TTGCGAATCGAGAGGAAGACGGGGCGGGGGCAGGGGGGGATAAATGGATC
TTGCTGTTTGAACAGAAATGAGGTAACTAAACCACCAAAATATGTGAAGG
AATAACGAAATACAAGGGTCGTGTTTCAACCGTTGGTGGCTGCTGACAGA
TTGGACCTATCCAATACCTTTGATCGCCACGTCGCAAGGCAGCTGCAGCG
ACTAGCTAGAGGTCAAGCGGGGATGTGCTGGATTCAGCCAAAGCTCAACA
AAAAGGTCAGACATTGTTTCCTCCGCCTTTTCTTTTTGTACGTTTCAATC
TATTGGCGGTCAGCGTCAGGCAGGGCAATACTTTCATCAACGTAATTTGG
GCCGTTTTTACTGAAATATTGAAGCCTATCGCACTGAAAAAAATCAATGA
AAAATTCAAAAACGTCCTGGTGAACAACATTACGTTAGTTGTTTTGGAAA
TTTTTGTAATGTTTCGATGACTGAAGTCGAACAACGAAGTCGACCGTAGC
TCTTATCCCAAGCCTGTGGTTAAAACACAAAATACCGTCCGAGTCCATAG
TTTTAGCTAATCCCGCCCCTTGCCCTTGCCTCGCTCGGCGATGCCCTGAT
GCCCATGTTCATCGTTGGAACAAGTGCAGCCGTTTCCATTTCCCATCGAA
AACCCGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig440:11896..13452+ >mRNA_H-paniculata_contig440.11149.1 ID=mRNA_H-paniculata_contig440.11149.1|Name=mRNA_H-paniculata_contig440.11149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig440:11896..13452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATATCTTGGGCTGGCAGGCAACGCCATAGGCCCGTGCGGAACCCAGGC
GGTACTAGAGGTCATGGGACCAGCGTTATCGTGCGTTATTGACGCTCTTC
CAGCGGGGGGAAGGCAGAGCAAGGCGGACGAAGCTAGCTCTCTTGCTTGT
AGCGTAGCTGGGCTCTTCGTGGATTTGGATGGGTGCTGCCTGGAGCGTAA
ACTAGTCGACGGGGAGTCGCTGGCAAAGGCATCAAACGCAACTATGTTTG
ATCCTTCCGCGCCCAATGATGTGTACAGAGATATCTTGGGCTGGCAGGCA
ACGCCATAGGCCCGTGCGGAACCCAGGCGGTACTAGAGGTCATGGGACCA
GCGTTATCGTGCGTTATTGACGCTCTTCCAGCGGGGGGAAGGCAGAGCAA
GGCGGACGAAGCTAGCTCTCTTGCTTGTAGCGTAGCTGGGCTCTTCGTGG
ATTTGGATGGGTGCTGCCTGGAGCGTAAACTAGTCGACGGGGAGTCGCTG
GCAAAGGCATCAAACGCAACTATGTTTGATCCTTCCGCGCCCAATGATGT
GTACAGATTGGACCTATCCAATACCTTTGATCGCCACGTCGCAAGGCAGC
TGCAGCGACTAGCTAGAGGTCAAGCGGGGATGTGCTGGATTCAGCCAAAG
CTCAACAAAAAGATTGGACCTATCCAATACCTTTGATCGCCACGTCGCAA
GGCAGCTGCAGCGACTAGCTAGAGGTCAAGCGGGGATGTGCTGGATTCAG
CCAAAGCTCAACAAAAAGCCGTTTCCATTTCCCATCGAAAACCCGCCGTT
TCCATTTCCCATCGAAAACCCG back to top
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