mRNA_H-paniculata_contig4396.11139.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4396.11139.1 vs. uniprot
Match: D7FR03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR03_ECTSI) HSP 1 Score: 266 bits (681), Expect = 2.120e-73 Identity = 251/718 (34.96%), Postives = 334/718 (46.52%), Query Frame = 1
Query: 1 RSGETIRAIEAMLE-GGGAGYLPMCARDLPEAIAVLGSRSMSPKSVRNRDKSNNRNVHRK-RGRNITEKEGWDKPK-----ATG--ESPIPQKD-----------GQTGCDNASSEAGNYQTDGRKFLSDRVRQDTTSERFLHPWQRKLEADKRDKLSSNIDEDLMQLAKDRRXXXXXXXXXXGSEHCRRAGRRVAA--------------RLGRQ--RRRFRSRAGGHTAQGRSQHSCIANNA-GTNEEPECVGEG------NGKIVI-------GSEYSVEQMRDSLVWARKTMISLVKRLGHKGIDVPPLRSVDELTTPVAG------DFKHLVGKLQQHLTSFEDDVATLGTQLISTT----AGEATSRVLGQRCDEACEVFESEFCRMIERLISVENVTQLNEVGPPVNPLSTCTATTVAASVSMQQGS-------------------RSSHLGLCPSCTILPVSRRCLDCEGDTADRDRCSGCFVRDHREAVRRNHCFLRIS-IGGSGGSSXXXXXXXXXXXXR-------RGDAVRCSKCGDLAASRRCLSCGGLDMCAACHFLTHRSPSRRSHVTEFLGENAVFVQEALHHHRTTA--------EHNKETGE-------ADVAHSIMSKPAS------AGKDGSDRATVSPAPVSSVRRNEIKGEGVDSRTHCDGKAGGDGQRDAGVFGKDAVRSLEEVRRTVPPPVVRP 1830
RS ETI AIEAMLE GGG YLP ARDLPEA+AVLG S +DK+ +K R R +K G D + TG ES +D G++G D + G T + + ERFLHPWQR LEADKR A + R + CRR RR AA RLGRQ RR R R+G G+ + G+ + G+G + ++V+ + S+ Q+RD+L WARKT+ +L+KRL +GI + R+ G + ++ KL++ + +FED+ +LG +T AG A +R +C+ ACE FE++FC +I+ L + G P +P +T++ S GS RS GLC SC++LPV+RRCLDC+GD DRDRCS CFVR+HR+A R+ H FLRIS G GG + + G RCS+CGDLAA+RRC C +DMCAACHFL HRSPS+RSHVTEF+GE AV +QEAL A E + + GE A + S S P++ G GSDR V +V R +G G +S +G FGK A +SL +VRRT+ P V P
Sbjct: 326 RSRETICAIEAMLEEGGGDSYLPARARDLPEALAVLGPPKPESSS---KDKARGSTARKKLRHRGAGKKSGEDPERENNGHGTGGEESHRTTRDALEASAENGSTGRSGNDPGPNTGGEGHTRKTSPGWPSAKPERAEERFLHPWQRALEADKR--------------AVNARTGGQHEAALLEEQRCRREARRAAAESKDXXXXXXXXXARLGRQHGRRGRRHRSGKSRVHGKGDRKMAPDRPEGSESRAKLNGQGYEVSSRDREVVLHRCGGDEDDDDSLRQLRDALGWARKTLEALMKRLKDRGIAIESARAAAARGGGGLGGAAKDWEIVRVLNKLRRRVAAFEDEGISLGVNKATTAEEGVAGAAEAR---SKCEAACESFEADFCHLIDELTATAK-------GLPSHPDLQLRSTSITHWASESSGSVPPGPGGAAASDPASRTTFRSLSFGLCSSCSVLPVARRCLDCDGD--DRDRCSSCFVREHRDADRQRHRFLRISGCGREGGGTVAGPRRGAASAEKGAVQEDSSGGGARCSRCGDLAAARRCRDCS-VDMCAACHFLAHRSPSKRSHVTEFVGETAVSMQEALQSRNWGAAAGSAAAREISNDGGEVAAKESGASSSSSPFSSPSTPQASRNVGNSGSDR-------VDAVSREAREGWGRESPVPGEGS-----------FGKGAAQSLAQVRRTIDAPAVPP 995
BLAST of mRNA_H-paniculata_contig4396.11139.1 vs. uniprot
Match: A0A6H5L541_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L541_9PHAE) HSP 1 Score: 260 bits (664), Expect = 4.750e-71 Identity = 249/705 (35.32%), Postives = 324/705 (45.96%), Query Frame = 1
Query: 1 RSGETIRAIEAMLE-GGGAGYLPMCARDLPEAIAVLG---------SRSMSPKSVRNRDKSNNRNVHRKRGRNITEKEGWDKP-----KATGESPIPQKDGQTGCDNASSEAGNYQTDGRKFLSDRVRQDTTSERFLHPWQRKLEADKRDKLSSNIDEDLMQLAKDRRXXXXXXXXXXGSEHCRRAGRRVAA--------------RLGRQ---RRRFRSRAGGHT--------AQGRSQHSCIANNAGTNEEPECVGEGNGKIVIGSEYSVE-------QMRDSLVWARKTMISLVKRLGHKGIDVPPLRSVDELTTPVAG------DFKHLVGKLQQHLTSFEDDVATLGTQLISTT----AGEATSRVLGQRCDEACEVFESEFCRMIERLISVENVTQLNEVGPPVNPLSTCTATTVAASVSMQQGSR-------------------SSHLGLCPSCTILPVSRRCLDCEGDTADRDRCSGCFVRDHREAVRRNHCFLRISIGGSGGSSXXXXXXXXXXXXRRG--------DAVRCSKCGDLAASRRCLSCGGLDMCAACHFLTHRSPSRRSHVTEFLGENAVFVQEALHHHR--TTAEHNKETGEADVAHSIMSKPASAGKDGSDRATVSPAPVSSVRRNEI----KGEGVD-----SRTHCDGKAGGDGQRDAGVFGKDAVRSLEEVRRTVPPPVVRP 1830
RS ETI AIEAMLE GGG YLP ARDLPEA+AVLG ++ + R K + N+ RK + T E D+ +A+ E+ + G NA E +T + R ERFLHPWQR LEA KR A + R + CRR RR AA RLGRQ RRR R A R + S N A N + V +G + S E Q+RD+L WARKT+ +LVKRL +GI V R+ E G + ++ KL++ + +FED+ +L + AG A +R +C+ ACE FE++FC +I+ L ++ G P +P +T+V G+ S GLCPSC++LPV+RRCLDC+GD DRDRCS CFVR+HR+A R+ H FLRIS G G+ +G VRCS+CGDLAA+RRC C +DMCAACHFL HRSPSRRSHVTEF+GE AV +QEALH T A G D + ++ + A+ SP+P SS ++ G D SR +G+ G G FGK A +SL VRRT+ P V P
Sbjct: 749 RSRETICAIEAMLEEGGGDSYLPARARDLPEALAVLGPPKPESSSEDKAKGGTAHRGAGKKSGGNLERKNNGHDTGGEESDRATRNALEASAENGSTGRSGNDAGPNAGGEGHTRKTPPGWPSAKPAR---AEERFLHPWQRALEASKR--------------AVNARTGGQHEAALLEEQRCRREARRAAAESKXXXXXXXXXXARLGRQHGHRRRRRXXXXXXXXXXXXXKMAPDRPERS--ENRAELNGQGYGVSSRDGDVGFHSRCCDEDDDDYLRQLRDALGWARKTLEALVKRLKDRGIAVEGARAAAESGGGGLGGAAKDWEIVRVLNKLRRRVAAFEDEGISLDVNKATAAEEGLAGAAEAR---SKCEAACESFEADFCHLIDELTAMAK-------GLPSHPDLQLRSTSVTHRALEASGNAHPGPGGAAAPDAPRRTTFGSLSFGLCPSCSVLPVARRCLDCDGD--DRDRCSSCFVREHRDADRQRHRFLRISGCGREGAGTVAAPPRRAASVEKGAVQEDSSGGGVRCSRCGDLAAARRCRDCR-VDMCAACHFLAHRSPSRRSHVTEFVGEAAVSMQEALHSRNRGTAAGSAAARGSRDDGGEVAARESG--------ASCSPSPCSSPSTPQVFRTVGDSGSDRVVTVSREALEGREGETPVPGEGSFGKGAAQSLALVRRTIDAPAVPP 1413 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4396.11139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4396.11139.1 >prot_H-paniculata_contig4396.11139.1 ID=prot_H-paniculata_contig4396.11139.1|Name=mRNA_H-paniculata_contig4396.11139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=610bp RSGETIRAIEAMLEGGGAGYLPMCARDLPEAIAVLGSRSMSPKSVRNRDKback to top mRNA from alignment at H-paniculata_contig4396:693..2635- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4396.11139.1 ID=mRNA_H-paniculata_contig4396.11139.1|Name=mRNA_H-paniculata_contig4396.11139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1943bp|location=Sequence derived from alignment at H-paniculata_contig4396:693..2635- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4396:693..2635- >mRNA_H-paniculata_contig4396.11139.1 ID=mRNA_H-paniculata_contig4396.11139.1|Name=mRNA_H-paniculata_contig4396.11139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3660bp|location=Sequence derived from alignment at H-paniculata_contig4396:693..2635- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |