mRNA_H-paniculata_contig4387.11119.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4387.11119.1
Unique NamemRNA_H-paniculata_contig4387.11119.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4387.11119.1 vs. uniprot
Match: D7FX50_ECTSI (ApaG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX50_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.640e-48
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 1
Query:   25 TSGNFRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAVEASEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPIT 291
            T+   RVEVRSQYYPEQSNPLKDQYIFVYKVKITNQS QTVQLVSRTWEIKA+EA+EAPQLVKGPGVVGQQPVLEPGQSFEYSSACPIT
Sbjct:  294 TTNGIRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSSQTVQLVSRTWEIKAIEATEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPIT 382          
BLAST of mRNA_H-paniculata_contig4387.11119.1 vs. uniprot
Match: A0A835ZBY5_9STRA (ApaG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.350e-30
Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    4 ETTGVCCTSGNFRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAVEASE---APQLVKGPGVVGQQPVLEPGQSFEYSSACPI 288
            ET GV       RVEVR+QY+PEQS+P K Q++FVY+V++TN S  TVQL +R W I+   A     A Q VKGPGVVGQQPVLEPGQSFEYSSACP+
Sbjct:  192 ETHGV-------RVEVRAQYFPEQSDPAKAQFVFVYRVRVTNASRATVQLAARRWHIRTANAKTGKTAVQEVKGPGVVGQQPVLEPGQSFEYSSACPV 282          
BLAST of mRNA_H-paniculata_contig4387.11119.1 vs. uniprot
Match: A0A835YH08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH08_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.010e-28
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    1 HETTGVCCTSGNFRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAVEASE---APQLVKGPGVVGQQPVLEPGQSFEYSSACPI 288
            + T     T G  RV VR+QY+PEQS+P + Q++FVY+V++TN+S  TVQL +R W I+ ++A     A Q V+GPGVVGQQPVLEPGQSFEYSSACP+
Sbjct:  204 YSTRSEAVTHG-VRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPV 301          
BLAST of mRNA_H-paniculata_contig4387.11119.1 vs. uniprot
Match: H6WBA4_VAULI (ApaG domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA4_VAULI)

HSP 1 Score: 111 bits (278), Expect = 1.230e-27
Identity = 56/86 (65.12%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   43 VEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAVEASEAP---QLVKGPGVVGQQPVLEPGQSFEYSSACPIT 291
            VEV SQY+ EQSNP K +YIF+Y+V ITN SP TVQLVSR W+I+ +  +      Q V GPGVVGQQP+LEPGQ FEY+SACPIT
Sbjct:  198 VEVVSQYFREQSNPTKHRYIFLYRVAITNNSPFTVQLVSRKWQIRTINPNTNKTEVQEVSGPGVVGQQPILEPGQIFEYNSACPIT 283          
BLAST of mRNA_H-paniculata_contig4387.11119.1 vs. uniprot
Match: A0A1Q8AVJ3_9BACT (Protein ApaG n=3 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A1Q8AVJ3_9BACT)

HSP 1 Score: 100 bits (250), Expect = 2.650e-25
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 HETTGVCCTSGNFRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAVEASEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPI 288
            H +T    T+ N RVEV SQY PE+S P ++++ F Y V+ITN+  +TVQL+SR W I   +A+   Q VKGPGVVG+QPVL PG+SF+Y+S CP+
Sbjct:   10 HASTSEAVTN-NVRVEVESQYAPERSQPFQNEWFFDYTVRITNERDETVQLLSRHWII--TDATGHSQEVKGPGVVGEQPVLGPGESFQYTSGCPL 102          
BLAST of mRNA_H-paniculata_contig4387.11119.1 vs. uniprot
Match: A0A2E7MA55_9DELT (Protein ApaG n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7MA55_9DELT)

HSP 1 Score: 97.1 bits (240), Expect = 6.600e-24
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   10 TGVCCTSGNFRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAVEASEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPI 288
            TG   T+   +V V SQY P +S+P   Q+ F+Y V+ITN+   TVQLVSR W I   +A+   + V+GPGVVG QPVL+PGQ FEY+SACP+
Sbjct:    2 TGSEMTTRGVKVRVVSQYVPRRSSPENGQWFFIYTVRITNEGEHTVQLVSRHWII--TDANGEVEEVRGPGVVGAQPVLDPGQGFEYTSACPL 92          
BLAST of mRNA_H-paniculata_contig4387.11119.1 vs. uniprot
Match: A0A2V9CFQ7_9BACT (Protein ApaG n=3 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9CFQ7_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 6.780e-24
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 1
Query:   25 TSGNFRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAVEASEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPIT 291
            T+ + RV V+++Y P +S+P ++Q+ F+Y V+ITN+   TVQL+SR W I   +A    Q V+GPGVVG QPVL PGQSFEY+S CP+T
Sbjct:    7 TTRSIRVHVKAEYDPGRSSPHQNQWFFLYTVRITNEGSNTVQLISRHWVI--TDAMGKVQEVRGPGVVGNQPVLAPGQSFEYTSGCPLT 93          
BLAST of mRNA_H-paniculata_contig4387.11119.1 vs. uniprot
Match: A0A838EX98_9PROT (Co2+/Mg2+ efflux protein ApaG n=1 Tax=Bdellovibrionales bacterium TaxID=2053517 RepID=A0A838EX98_9PROT)

HSP 1 Score: 97.1 bits (240), Expect = 7.360e-24
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 1
Query:   28 SGNFRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAVEASEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPI 288
            + NFR+EV++ +  +QSNPL  QY+F Y V ITN+   + QL+SR W IK  +A    + V+GPGV+GQQP  EPGQSFEYSS CP+
Sbjct:    9 NNNFRIEVKTNFDFDQSNPLNFQYLFRYTVLITNKGDVSAQLLSRKWNIK--DAKSEVKFVEGPGVIGQQPNFEPGQSFEYSSFCPL 93          
BLAST of mRNA_H-paniculata_contig4387.11119.1 vs. uniprot
Match: UPI001FEEB164 (Co2+/Mg2+ efflux protein ApaG n=1 Tax=Flagellatimonas centrodinii TaxID=2806210 RepID=UPI001FEEB164)

HSP 1 Score: 96.7 bits (239), Expect = 9.100e-24
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1
Query:   22 CTSGNFRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAVEASEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPI 288
            CT+ N RV+VR +Y PE S P   Q++F Y+++ITN  P+TVQL+ R W I   E     Q V+GPGVVGQQPVL PG  ++Y+S CP+
Sbjct:    4 CTTRNIRVQVRPRYLPEASRPAAQQWMFAYEIEITNTGPETVQLLHRHWIITDGEGRT--QEVRGPGVVGQQPVLGPGAVYQYASGCPL 90          
BLAST of mRNA_H-paniculata_contig4387.11119.1 vs. uniprot
Match: A0A2V8DIE0_9BACT (Protein ApaG n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8DIE0_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-23
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   28 SGNFRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAVEASEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPI 288
            + N RVEV SQY PE+S P + Q+ F Y V+ITN+  QTVQL+SR W I   +A+   + V+G GVVG+QPVL PG+SFEY+S CP+
Sbjct:   17 TNNVRVEVESQYAPERSLPFQSQWFFHYTVRITNERDQTVQLLSRHWII--TDATGHTEEVRGAGVVGEQPVLSPGESFEYTSGCPL 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4387.11119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX50_ECTSI1.640e-4892.13ApaG domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZBY5_9STRA5.350e-3062.24ApaG domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YH08_9STRA1.010e-2857.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H6WBA4_VAULI1.230e-2765.12ApaG domain-containing protein n=1 Tax=Vaucheria l... [more]
A0A1Q8AVJ3_9BACT2.650e-2553.13Protein ApaG n=3 Tax=unclassified Acidobacteria Ta... [more]
A0A2E7MA55_9DELT6.600e-2452.69Protein ApaG n=1 Tax=Deltaproteobacteria bacterium... [more]
A0A2V9CFQ7_9BACT6.780e-2452.81Protein ApaG n=3 Tax=Acidobacteria bacterium TaxID... [more]
A0A838EX98_9PROT7.360e-2454.02Co2+/Mg2+ efflux protein ApaG n=1 Tax=Bdellovibrio... [more]
UPI001FEEB1649.100e-2451.69Co2+/Mg2+ efflux protein ApaG n=1 Tax=Flagellatimo... [more]
A0A2V8DIE0_9BACT1.200e-2355.17Protein ApaG n=1 Tax=Acidobacteria bacterium TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4387contigH-paniculata_contig4387:5027..5648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue1.3e-39
Seed eggNOG ortholog2880.D7FX50
KEGG koko:K06195
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mitochondrion morphogenesis
EggNOG OGsCOG2967@1,KOG4408@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930325.5418382-CDS-H-paniculata_contig4387:5026..52211622930325.5418382-CDS-H-paniculata_contig4387:5026..5221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4387 5027..5221 +
1691481242.429111-CDS-H-paniculata_contig4387:5026..52211691481242.429111-CDS-H-paniculata_contig4387:5026..5221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4387 5027..5221 +
1622930325.5609055-CDS-H-paniculata_contig4387:5552..56481622930325.5609055-CDS-H-paniculata_contig4387:5552..5648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4387 5553..5648 +
1691481242.453245-CDS-H-paniculata_contig4387:5552..56481691481242.453245-CDS-H-paniculata_contig4387:5552..5648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4387 5553..5648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4387.11119.1prot_H-paniculata_contig4387.11119.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4387 5027..5648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4387.11119.1

>prot_H-paniculata_contig4387.11119.1 ID=prot_H-paniculata_contig4387.11119.1|Name=mRNA_H-paniculata_contig4387.11119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
HETTGVCCTSGNFRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQ
LVSRTWEIKAVEASEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPIT
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mRNA from alignment at H-paniculata_contig4387:5027..5648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4387.11119.1 ID=mRNA_H-paniculata_contig4387.11119.1|Name=mRNA_H-paniculata_contig4387.11119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=622bp|location=Sequence derived from alignment at H-paniculata_contig4387:5027..5648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGAAACAACCGGTGTATGTTGCACGTCTGGCAACTTTAGGGTGGAGGT TCGCAGTCAGTACTACCCGGAGCAGAGCAATCCTCTAAAGGATCAGTACA TCTTCGTGTACAAGGTTAAGATCACCAACCAGTCTCCCCAGACGGTGCAG CTTGTGTCGAGGACTTGGGAGATCAAGGCGGTTGAAGCGTCGGAGGTATG CACTTGTATACATGCGTCATAATCCAGTGCTTGCGTGCCGCGTCCTGTTG GTTCTTATGCTGTTCCTCCATCCCGCCCTTGCTTCAAATATTTCGCGATG TGCATTTTTTTGTCAAGCTCTGTTTGATTTCGTGTGCTCTTTTGTTTATT CTCGCTTTTGTCTCTTTGTCGAACACGACAGACGTACCGATTGCGATGTA TCATGTACTGCTTCAACCATGGTATATCCAATAGGATCCGTTCAATGATT CGCCCCCAAGCCAATAGTAGTGTGACGTGTGTGCGTGTGTGTGTGTGTGT TGTATATGTGCATTTTCTCGTCTCAGGCACCGCAACTTGTCAAGGGTCCC GGAGTGGTTGGCCAGCAACCGGTGCTGGAGCCTGGACAAAGCTTCGAGTA CTCATCGGCGTGTCCAATCACG
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Coding sequence (CDS) from alignment at H-paniculata_contig4387:5027..5648+

>mRNA_H-paniculata_contig4387.11119.1 ID=mRNA_H-paniculata_contig4387.11119.1|Name=mRNA_H-paniculata_contig4387.11119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig4387:5027..5648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGAAACAACCGGTGTATGTTGCACGTCTGGCAACTTTAGGGTGGAGGT
TCGCAGTCAGTACTACCCGGAGCAGAGCAATCCTCTAAAGGATCAGTACA
TCTTCGTGTACAAGGTTAAGATCACCAACCAGTCTCCCCAGACGGTGCAG
CTTGTGTCGAGGACTTGGGAGATCAAGGCGGTTGAAGCGTCGGAGCACGA
AACAACCGGTGTATGTTGCACGTCTGGCAACTTTAGGGTGGAGGTTCGCA
GTCAGTACTACCCGGAGCAGAGCAATCCTCTAAAGGATCAGTACATCTTC
GTGTACAAGGTTAAGATCACCAACCAGTCTCCCCAGACGGTGCAGCTTGT
GTCGAGGACTTGGGAGATCAAGGCGGTTGAAGCGTCGGAGGCACCGCAAC
TTGTCAAGGGTCCCGGAGTGGTTGGCCAGCAACCGGTGCTGGAGCCTGGA
CAAAGCTTCGAGTACTCATCGGCGTGTCCAATCACGGCACCGCAACTTGT
CAAGGGTCCCGGAGTGGTTGGCCAGCAACCGGTGCTGGAGCCTGGACAAA
GCTTCGAGTACTCATCGGCGTGTCCAATCACG
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