mRNA_H-paniculata_contig43859.11117.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43859.11117.1
Unique NamemRNA_H-paniculata_contig43859.11117.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43859.11117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43859contigH-paniculata_contig43859:1294..1653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930325.1745286-CDS-H-paniculata_contig43859:1293..16531622930325.1745286-CDS-H-paniculata_contig43859:1293..1653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43859 1294..1653 +
1691481242.2221112-CDS-H-paniculata_contig43859:1293..16531691481242.2221112-CDS-H-paniculata_contig43859:1293..1653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43859 1294..1653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43859.11117.1prot_H-paniculata_contig43859.11117.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43859 1294..1653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43859.11117.1

>prot_H-paniculata_contig43859.11117.1 ID=prot_H-paniculata_contig43859.11117.1|Name=mRNA_H-paniculata_contig43859.11117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MVNGTVERMNPEVVNTFKVMLNGANRPVSEWSAAVPLVQWALNTAHRARL
GTTPHQLMFGRALRTVFSLLADNSGAEWDVEDVGVPPEGMQELVEEWVKS
QGELRRDVLERIKLYRERKR
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mRNA from alignment at H-paniculata_contig43859:1294..1653+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43859.11117.1 ID=mRNA_H-paniculata_contig43859.11117.1|Name=mRNA_H-paniculata_contig43859.11117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig43859:1294..1653+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCAACGGCACCGTGGAACGCATGAATCCAGAGGTTGTCAACACCTT
CAAGGTGATGCTGAACGGGGCGAACCGCCCGGTGAGCGAATGGTCGGCAG
CTGTGCCGTTGGTCCAGTGGGCCCTCAACACTGCGCACCGGGCCAGGTTG
GGTACCACGCCGCACCAGTTAATGTTTGGCAGAGCGCTGCGCACCGTTTT
TTCTCTTCTCGCAGACAACAGTGGCGCCGAGTGGGATGTGGAGGACGTTG
GCGTGCCGCCGGAGGGCATGCAAGAGCTGGTGGAGGAGTGGGTCAAGTCC
CAGGGGGAGCTGCGCCGTGATGTGTTGGAGAGGATCAAACTGTACCGAGA
GCGCAAGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig43859:1294..1653+

>mRNA_H-paniculata_contig43859.11117.1 ID=mRNA_H-paniculata_contig43859.11117.1|Name=mRNA_H-paniculata_contig43859.11117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig43859:1294..1653+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCAACGGCACCGTGGAACGCATGAATCCAGAGGTTGTCAACACCTT
CAAGGTGATGCTGAACGGGGCGAACCGCCCGGTGAGCGAATGGTCGGCAG
CTGTGCCGTTGGTCCAGTGGGCCCTCAACACTGCGCACCGGGCCAGGTTG
GGTACCACGCCGCACCAGTTAATGTTTGGCAGAGCGCTGCGCACCGTTTT
TTCTCTTCTCGCAGACAACAGTGGCGCCGAGTGGGATGTGGAGGACGTTG
GCGTGCCGCCGGAGGGCATGCAAGAGCTGGTGGAGGAGTGGGTCAAGTCC
CAGGGGGAGCTGCGCCGTGATGTGTTGGAGAGGATCAAACTGTACCGAGA
GCGCAAGCGGATGGTCAACGGCACCGTGGAACGCATGAATCCAGAGGTTG
TCAACACCTTCAAGGTGATGCTGAACGGGGCGAACCGCCCGGTGAGCGAA
TGGTCGGCAGCTGTGCCGTTGGTCCAGTGGGCCCTCAACACTGCGCACCG
GGCCAGGTTGGGTACCACGCCGCACCAGTTAATGTTTGGCAGAGCGCTGC
GCACCGTTTTTTCTCTTCTCGCAGACAACAGTGGCGCCGAGTGGGATGTG
GAGGACGTTGGCGTGCCGCCGGAGGGCATGCAAGAGCTGGTGGAGGAGTG
GGTCAAGTCCCAGGGGGAGCTGCGCCGTGATGTGTTGGAGAGGATCAAAC
TGTACCGAGAGCGCAAGCGG
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