mRNA_H-paniculata_contig43841.11116.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig43841.11116.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 174 bits (441), Expect = 4.080e-48 Identity = 81/119 (68.07%), Postives = 101/119 (84.87%), Query Frame = 1
Query: 1 LWKPYTPECFYYEIVECIRRILLAGVVVFIYPNSAAQVAVTIVMAVFFIFVAEALSPYESRWDTWVSRMGHAIVFISMFVALLLKVDVSNERTSSQRVFGSILVSVHAGMILAALVESV 357
LWKPY P FYYE++EC RR+LLAGVVVFIYPN+A Q+A+T++MA F+ V+E L+PY SRWDTW+SRMGHA+VF+SM+VALLLKVDVSNER SQRVF +LV+ HA MIL ++E+V
Sbjct: 1923 LWKPYKPSVFYYEVIECGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETV 2041
BLAST of mRNA_H-paniculata_contig43841.11116.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 169 bits (428), Expect = 2.280e-46 Identity = 79/118 (66.95%), Postives = 100/118 (84.75%), Query Frame = 1
Query: 1 LWKPYTPECFYYEIVECIRRILLAGVVVFIYPNSAAQVAVTIVMAVFFIFVAEALSPYESRWDTWVSRMGHAIVFISMFVALLLKVDVSNERTSSQRVFGSILVSVHAGMILAALVES 354
LW+PY P FYYE++EC RR+LLAGVVVFIYPN+AAQ+AVT+++A F ++E L+PY SRWDTW+SR+GH +VF+SM+VALLLKVDVS+ER SSQ VF S+LV+VH MIL LVE+
Sbjct: 1368 LWEPYKPAVFYYEVIECFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVEA 1485
BLAST of mRNA_H-paniculata_contig43841.11116.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 167 bits (424), Expect = 7.880e-46 Identity = 77/118 (65.25%), Postives = 101/118 (85.59%), Query Frame = 1
Query: 1 LWKPYTPECFYYEIVECIRRILLAGVVVFIYPNSAAQVAVTIVMAVFFIFVAEALSPYESRWDTWVSRMGHAIVFISMFVALLLKVDVSNERTSSQRVFGSILVSVHAGMILAALVES 354
LW+PY P FYYE++EC RRILL G+VVFIYPN+AAQ+A+T++MA FF ++EA+SPY SRW+TWV+RMGH +V +SM+VALLLKVDVS+ER SQ VF ++LV+VHA MIL+ +VE+
Sbjct: 1283 LWQPYKPSVFYYEVIECGRRILLTGIVVFIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVET 1400
BLAST of mRNA_H-paniculata_contig43841.11116.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 167 bits (423), Expect = 1.050e-45 Identity = 78/117 (66.67%), Postives = 98/117 (83.76%), Query Frame = 1
Query: 1 LWKPYTPECFYYEIVECIRRILLAGVVVFIYPNSAAQVAVTIVMAVFFIFVAEALSPYESRWDTWVSRMGHAIVFISMFVALLLKVDVSNERTSSQRVFGSILVSVHAGMILAALVE 351
LWKPY P FYYE++EC RR+LLAGVVVFIYPN+AAQ+AV +++AV F ++EAL+PY SRWDTW+ RMGHA+V +SM+VALLLKVDVS+ER SSQRVF S+LV+ H M+ L+E
Sbjct: 833 LWKPYRPSVFYYEVIECARRVLLAGVVVFIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMVGVVLLE 949
BLAST of mRNA_H-paniculata_contig43841.11116.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 165 bits (417), Expect = 6.920e-45 Identity = 74/118 (62.71%), Postives = 101/118 (85.59%), Query Frame = 1
Query: 1 LWKPYTPECFYYEIVECIRRILLAGVVVFIYPNSAAQVAVTIVMAVFFIFVAEALSPYESRWDTWVSRMGHAIVFISMFVALLLKVDVSNERTSSQRVFGSILVSVHAGMILAALVES 354
LW+PY P FYYE++EC RR+LL G++VFIYPN+AAQ+A+T++MA FF ++EA+SPY SRW+TWV+RMGH +V +S++VALLLKVDVS+ER SQ VF ++LV+VHA MIL+ +VE+
Sbjct: 1342 LWQPYKPSVFYYEVIECGRRVLLTGIIVFIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMGHVVVAVSVYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVET 1459
BLAST of mRNA_H-paniculata_contig43841.11116.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 163 bits (413), Expect = 2.340e-44 Identity = 75/119 (63.03%), Postives = 100/119 (84.03%), Query Frame = 1
Query: 1 LWKPYTPECFYYEIVECIRRILLAGVVVFIYPNSAAQVAVTIVMAVFFIFVAEALSPYESRWDTWVSRMGHAIVFISMFVALLLKVDVSNERTSSQRVFGSILVSVHAGMILAALVESV 357
LW+PY P +YYE++EC RRILL G+VVFIYPN+AAQ+A+T++M V F ++EAL PY WDTWVSR+ HA+VF+S++VALLLKVDVSNE+ SSQ+VF ++LV+ HA MILA +VE++
Sbjct: 873 LWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETI 991
BLAST of mRNA_H-paniculata_contig43841.11116.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 163 bits (413), Expect = 2.440e-44 Identity = 75/119 (63.03%), Postives = 100/119 (84.03%), Query Frame = 1
Query: 1 LWKPYTPECFYYEIVECIRRILLAGVVVFIYPNSAAQVAVTIVMAVFFIFVAEALSPYESRWDTWVSRMGHAIVFISMFVALLLKVDVSNERTSSQRVFGSILVSVHAGMILAALVESV 357
LW+PY P +YYE++EC RRILL G+VVFIYPN+AAQ+A+T++M V F ++EAL PY WDTWVSR+ HA+VF+S++VALLLKVDVSNE+ SSQ+VF ++LV+ HA MILA +VE++
Sbjct: 2611 LWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETI 2729
BLAST of mRNA_H-paniculata_contig43841.11116.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI) HSP 1 Score: 161 bits (408), Expect = 3.960e-44 Identity = 74/119 (62.18%), Postives = 98/119 (82.35%), Query Frame = 1
Query: 1 LWKPYTPECFYYEIVECIRRILLAGVVVFIYPNSAAQVAVTIVMAVFFIFVAEALSPYESRWDTWVSRMGHAIVFISMFVALLLKVDVSNERTSSQRVFGSILVSVHAGMILAALVESV 357
LWKPY P FYYE+ EC R+LLAGVVVFIYP++AAQ+AVT+++A F+ V+E LSPY S+WD WV+RMGH +VF+SMFVALLLKVDV++E SSQ+VF S+LV+ H M+L ++E++
Sbjct: 554 LWKPYRPSVFYYEVFECGWRVLLAGVVVFIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEAI 672
BLAST of mRNA_H-paniculata_contig43841.11116.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 161 bits (408), Expect = 1.120e-43 Identity = 72/118 (61.02%), Postives = 97/118 (82.20%), Query Frame = 1
Query: 1 LWKPYTPECFYYEIVECIRRILLAGVVVFIYPNSAAQVAVTIVMAVFFIFVAEALSPYESRWDTWVSRMGHAIVFISMFVALLLKVDVSNERTSSQRVFGSILVSVHAGMILAALVES 354
LWKPY P FYYE++EC RR+LLAGVVVFI+PN+AAQ+A+T++MA F+ V+E L+P+ S+WD W++R GH +VF+SM++ALLLKVDVS ER SQRV+ +LV+ HA MILA + E+
Sbjct: 1112 LWKPYKPSVFYYEVIECGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTET 1229
BLAST of mRNA_H-paniculata_contig43841.11116.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 161 bits (407), Expect = 1.550e-43 Identity = 72/118 (61.02%), Postives = 96/118 (81.36%), Query Frame = 1
Query: 1 LWKPYTPECFYYEIVECIRRILLAGVVVFIYPNSAAQVAVTIVMAVFFIFVAEALSPYESRWDTWVSRMGHAIVFISMFVALLLKVDVSNERTSSQRVFGSILVSVHAGMILAALVES 354
LWKPY P FYYE+VEC RR+LLAGVVVFIYPNS+AQ+A+T+++A F+ ++E L+PY SRWDTW++RMGH +V SM++ALLLKVDVS ER+SSQ VF ++LV H M++ + E+
Sbjct: 1468 LWKPYKPSVFYYEVVECARRVLLAGVVVFIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAET 1585 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43841.11116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig43841.11116.1 >prot_H-paniculata_contig43841.11116.1 ID=prot_H-paniculata_contig43841.11116.1|Name=mRNA_H-paniculata_contig43841.11116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp LWKPYTPECFYYEIVECIRRILLAGVVVFIYPNSAAQVAVTIVMAVFFIFback to top mRNA from alignment at H-paniculata_contig43841:29..385+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig43841.11116.1 ID=mRNA_H-paniculata_contig43841.11116.1|Name=mRNA_H-paniculata_contig43841.11116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at H-paniculata_contig43841:29..385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig43841:29..385+ >mRNA_H-paniculata_contig43841.11116.1 ID=mRNA_H-paniculata_contig43841.11116.1|Name=mRNA_H-paniculata_contig43841.11116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig43841:29..385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |