mRNA_H-paniculata_contig4384.11115.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4384.11115.1
Unique NamemRNA_H-paniculata_contig4384.11115.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4384.11115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4384contigH-paniculata_contig4384:14896..15613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size718
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4384.11115.1prot_H-paniculata_contig4384.11115.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4384 14904..15320 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930324.9177668-UTR-H-paniculata_contig4384:14895..149031622930324.9177668-UTR-H-paniculata_contig4384:14895..14903Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4384 14896..14903 +
1691481242.1359577-UTR-H-paniculata_contig4384:14895..149031691481242.1359577-UTR-H-paniculata_contig4384:14895..14903Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4384 14896..14903 +
1622930324.9581602-UTR-H-paniculata_contig4384:15320..156131622930324.9581602-UTR-H-paniculata_contig4384:15320..15613Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4384 15321..15613 +
1691481242.1559548-UTR-H-paniculata_contig4384:15320..156131691481242.1559548-UTR-H-paniculata_contig4384:15320..15613Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4384 15321..15613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930324.9349744-CDS-H-paniculata_contig4384:14903..153201622930324.9349744-CDS-H-paniculata_contig4384:14903..15320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4384 14904..15320 +
1691481242.1458774-CDS-H-paniculata_contig4384:14903..153201691481242.1458774-CDS-H-paniculata_contig4384:14903..15320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4384 14904..15320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4384.11115.1

>prot_H-paniculata_contig4384.11115.1 ID=prot_H-paniculata_contig4384.11115.1|Name=mRNA_H-paniculata_contig4384.11115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MVLFPHGLSFQVQKKKKKQDNFQFASIMPFHEKARWGGGGVLPGMRSAAE
NTHGFVSTQLLEKIPQLQVHPPPIPPLETVTKKYAHIHVACCLCVQNHHV
EYTHPCQQLYQPSVIVGGACSMLQQLRHAKHEYAPDLE*
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mRNA from alignment at H-paniculata_contig4384:14896..15613+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4384.11115.1 ID=mRNA_H-paniculata_contig4384.11115.1|Name=mRNA_H-paniculata_contig4384.11115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=718bp|location=Sequence derived from alignment at H-paniculata_contig4384:14896..15613+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGATTTTTATGGTTCTTTTCCCTCATGGTTTGTCTTTTCAAGTACAGAAA
AAAAAAAAAAAGCAAGACAACTTCCAATTTGCTTCTATCATGCCGTTTCA
TGAAAAAGCACGGTGGGGAGGGGGGGGGGTACTACCAGGTATGCGATCAG
CAGCCGAAAACACACATGGGTTTGTAAGCACCCAGTTACTCGAAAAAATT
CCCCAGCTTCAAGTACATCCTCCACCCATTCCTCCACTCGAAACAGTAAC
TAAAAAATACGCACACATTCATGTTGCCTGCTGTCTCTGCGTTCAAAACC
ATCATGTGGAGTATACGCACCCATGCCAACAACTGTACCAACCTTCAGTT
ATCGTTGGTGGCGCATGTTCCATGCTTCAGCAGCTGAGGCATGCAAAGCA
TGAGTACGCCCCCGACCTGGAATGAACAGTTGGTCACCAAGTGAACCACT
TTTACTCATCAAAATGTATCGCGTTGCACATTAAAAAAAGCCGTGCTCCA
GAAATGTTTGATTTCACCAAACATTTGTGTGCCTGAATAAAAATATACAG
CTGTCGAGTTTCATTTAAAAGGGACACCAACAACGCTCGAAAGAGCACGA
GGCAAAAGAATACTACAACCAGCTCTGCTTCGGGAGAGAATAACAAGTAC
AAGGCCGCAAAAAAAAAAGAAGAGAAAAGCATCAATACAAGCCCCAGCTT
AACTCATGCCTCACTCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig4384:14896..15613+

>mRNA_H-paniculata_contig4384.11115.1 ID=mRNA_H-paniculata_contig4384.11115.1|Name=mRNA_H-paniculata_contig4384.11115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig4384:14896..15613+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCTTTTCCCTCATGGTTTGTCTTTTCAAGTACAGAAAAAAAAAAA
AAAGCAAGACAACTTCCAATTTGCTTCTATCATGCCGTTTCATGAAAAAG
CACGGTGGGGAGGGGGGGGGGTACTACCAGGTATGCGATCAGCAGCCGAA
AACACACATGGGTTTGTAAGCACCCAGTTACTCGAAAAAATTCCCCAGCT
TCAAGTACATCCTCCACCCATTCCTCCACTCGAAACAGTAACTAAAAAAT
ACGCACACATTCATGTTGCCTGCTGTCTCTGCGTTCAAAACCATCATGTG
GAGTATACGCACCCATGCCAACAACTGTACCAACCTTCAGTTATCGTTGG
TGGCGCATGTTCCATGCTTCAGCAGCTGAGGCATGCAAAGCATGAGTACG
CCCCCGACCTGGAATGAATGGTTCTTTTCCCTCATGGTTTGTCTTTTCAA
GTACAGAAAAAAAAAAAAAAGCAAGACAACTTCCAATTTGCTTCTATCAT
GCCGTTTCATGAAAAAGCACGGTGGGGAGGGGGGGGGGTACTACCAGGTA
TGCGATCAGCAGCCGAAAACACACATGGGTTTGTAAGCACCCAGTTACTC
GAAAAAATTCCCCAGCTTCAAGTACATCCTCCACCCATTCCTCCACTCGA
AACAGTAACTAAAAAATACGCACACATTCATGTTGCCTGCTGTCTCTGCG
TTCAAAACCATCATGTGGAGTATACGCACCCATGCCAACAACTGTACCAA
CCTTCAGTTATCGTTGGTGGCGCATGTTCCATGCTTCAGCAGCTGAGGCA
TGCAAAGCATGAGTACGCCCCCGACCTGGAATGA
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