mRNA_H-paniculata_contig4375.11105.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4375.11105.1
Unique NamemRNA_H-paniculata_contig4375.11105.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4375.11105.1 vs. uniprot
Match: A0A6H5JVU6_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JVU6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 7.500e-24
Identity = 52/59 (88.14%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:   22 RQRVAIARAVLKNPPVLVLDEATSSLDAESERLVSEAIDRLVASRTVLVIAHRQSTISK 198
            +QRVAIARAVLKNPP+L+LDEATS+LDAESERLVSEAIDR+VASRTVLVIAHRQST+ K
Sbjct:  642 KQRVAIARAVLKNPPILILDEATSALDAESERLVSEAIDRVVASRTVLVIAHRQSTVKK 700
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BLAST of mRNA_H-paniculata_contig4375.11105.1 vs. uniprot
Match: A0A7V8BER1_9BURK (ATP-binding cassette domain-containing protein n=3 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V8BER1_9BURK)

HSP 1 Score: 89.0 bits (219), Expect = 1.710e-21
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:   22 RQRVAIARAVLKNPPVLVLDEATSSLDAESERLVSEAIDRLVASRTVLVIAHRQSTI 192
            RQR+AIARA+LKNPPVL+LDEATS+LDAESERLV  A++RLVA RT LVIAHR +T+
Sbjct:    8 RQRIAIARAILKNPPVLLLDEATSALDAESERLVQSALERLVAGRTTLVIAHRLATV 64
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BLAST of mRNA_H-paniculata_contig4375.11105.1 vs. uniprot
Match: A0A3M1AKI1_9BACT (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M1AKI1_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 1.510e-20
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:   22 RQRVAIARAVLKNPPVLVLDEATSSLDAESERLVSEAIDRLVASRTVLVIAHRQSTI 192
            RQR+AIARAVLKNPP+L+LDEATSSLD+ESE LV +AI+RL+A+RT  VIAHR STI
Sbjct:   56 RQRIAIARAVLKNPPILILDEATSSLDSESELLVQQAIERLMANRTTFVIAHRLSTI 112
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BLAST of mRNA_H-paniculata_contig4375.11105.1 vs. uniprot
Match: A0A7W1SI94_9BACT (ATP-binding cassette domain-containing protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7W1SI94_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 2.090e-20
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:   22 RQRVAIARAVLKNPPVLVLDEATSSLDAESERLVSEAIDRLVASRTVLVIAHRQSTI 192
            +QRVAIAR VLK+PP+L+LDEATS+LD ESERLV EA++RL+A RTV VIAHR STI
Sbjct:   16 KQRVAIARVVLKDPPILILDEATSALDTESERLVQEAVERLLAGRTVFVIAHRLSTI 72
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BLAST of mRNA_H-paniculata_contig4375.11105.1 vs. uniprot
Match: A0A0S8D332_9PROT (ABC transporter domain-containing protein (Fragment) n=1 Tax=Betaproteobacteria bacterium SG8_40 TaxID=1703389 RepID=A0A0S8D332_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 5.220e-20
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:   22 RQRVAIARAVLKNPPVLVLDEATSSLDAESERLVSEAIDRLVASRTVLVIAHRQSTISK 198
            RQRVAIARA+LKNPPV++LDEATSSLDAESERLV +A+D L+  RT ++IAHR +T+ K
Sbjct:   13 RQRVAIARAMLKNPPVMLLDEATSSLDAESERLVQQALDDLMRGRTTIIIAHRLATVLK 71
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BLAST of mRNA_H-paniculata_contig4375.11105.1 vs. uniprot
Match: A0A4Q3QVX0_9BACT (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=A0A4Q3QVX0_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 6.050e-20
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:   22 RQRVAIARAVLKNPPVLVLDEATSSLDAESERLVSEAIDRLVASRTVLVIAHRQSTISK 198
            RQR+AIARA+LK+P +L+LDEATSSLDAESERLV EA+D L+ +RT L+IAHR +TI K
Sbjct:   36 RQRIAIARAILKDPAILILDEATSSLDAESERLVQEALDELMQNRTTLIIAHRLATIRK 94
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BLAST of mRNA_H-paniculata_contig4375.11105.1 vs. uniprot
Match: A0A7C2F1X1_9BACT (ABC transporter ATP-binding protein n=1 Tax=Caldithrix sp. TaxID=1962856 RepID=A0A7C2F1X1_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 8.560e-20
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:   22 RQRVAIARAVLKNPPVLVLDEATSSLDAESERLVSEAIDRLVASRTVLVIAHRQSTI 192
            +QR++IARA+LKNPP+L+LDEATSSLD ESERLV EAID+L+ SRTVLVIAHR STI
Sbjct:  334 KQRLSIARAILKNPPILILDEATSSLDTESERLVQEAIDKLLQSRTVLVIAHRLSTI 390
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BLAST of mRNA_H-paniculata_contig4375.11105.1 vs. uniprot
Match: UPI00125DEFF4 (ATP-binding cassette domain-containing protein n=1 Tax=Bacteroides stercoris TaxID=46506 RepID=UPI00125DEFF4)

HSP 1 Score: 85.1 bits (209), Expect = 9.140e-20
Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:   22 RQRVAIARAVLKNPPVLVLDEATSSLDAESERLVSEAIDRLVASRTVLVIAHRQSTI 192
            RQR++IARA+LKNPP+L+LDEATS+LD ESERLV EA++RL+ +RT + IAHR STI
Sbjct:   31 RQRISIARAILKNPPILILDEATSALDTESERLVQEALERLMKTRTTIAIAHRLSTI 87
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BLAST of mRNA_H-paniculata_contig4375.11105.1 vs. uniprot
Match: A0A661X3A6_9BACT (ABC transporter ATP-binding protein (Fragment) n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A661X3A6_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 9.600e-20
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:   22 RQRVAIARAVLKNPPVLVLDEATSSLDAESERLVSEAIDRLVASRTVLVIAHRQSTI 192
            +QR+AIARA+LKNPP+L+LDEATSSLD ESERLV EAID+L+ +RTVLVIAHR STI
Sbjct:  353 KQRLAIARAILKNPPILILDEATSSLDTESERLVQEAIDKLMRNRTVLVIAHRLSTI 409
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BLAST of mRNA_H-paniculata_contig4375.11105.1 vs. uniprot
Match: A0A2H6N2Y0_MICLE (ABC transporter domain-containing protein (Fragment) n=1 Tax=Micrurus lemniscatus carvalhoi TaxID=129465 RepID=A0A2H6N2Y0_MICLE)

HSP 1 Score: 84.3 bits (207), Expect = 9.970e-20
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    4 SMSTPIRQRVAIARAVLKNPPVLVLDEATSSLDAESERLVSEAIDRLVASRTVLVIAHRQSTISK 198
            ++S   +QRVAIARA++KNP +L+LDEATS+LDAESE +V EA++R VA RTVLVIAHR ST+ +
Sbjct:   21 TLSAGQKQRVAIARALIKNPKILILDEATSALDAESEHVVQEALNRAVAGRTVLVIAHRLSTVKE 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4375.11105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVU6_9PHAE7.500e-2488.14ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7V8BER1_9BURK1.710e-2177.19ATP-binding cassette domain-containing protein n=3... [more]
A0A3M1AKI1_9BACT1.510e-2077.19ATP-binding cassette domain-containing protein (Fr... [more]
A0A7W1SI94_9BACT2.090e-2075.44ATP-binding cassette domain-containing protein n=1... [more]
A0A0S8D332_9PROT5.220e-2071.19ABC transporter domain-containing protein (Fragmen... [more]
A0A4Q3QVX0_9BACT6.050e-2071.19ATP-binding cassette domain-containing protein (Fr... [more]
A0A7C2F1X1_9BACT8.560e-2078.95ABC transporter ATP-binding protein n=1 Tax=Caldit... [more]
UPI00125DEFF49.140e-2070.18ATP-binding cassette domain-containing protein n=1... [more]
A0A661X3A6_9BACT9.600e-2078.95ABC transporter ATP-binding protein (Fragment) n=1... [more]
A0A2H6N2Y0_MICLE9.970e-2064.62ABC transporter domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4375contigH-paniculata_contig4375:15589..15786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue7.8e-20
Seed eggNOG ortholog2880.D8LL57
KEGG koko:K05657
KEGG TC3.A.1.201
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000323,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003824,GO:0005215,GO:0005216,GO:0005217,GO:0005253,GO:0005254,GO:0005260,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0005886,GO:0005887,GO:0006464,GO:0006508,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006833,GO:0006873,GO:0006885,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008144,GO:0008150,GO:0008152,GO:0008200,GO:0008509,GO:0008514,GO:0009719,GO:0009986,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010359,GO:0010646,GO:0010647,GO:0010817,GO:0012505,GO:0012506,GO:0014070,GO:0014074,GO:0015075,GO:0015103,GO:0015106,GO:0015108,GO:0015267,GO:0015276,GO:0015318,GO:0015399,GO:0015405,GO:0015698,GO:0015701,GO:0015711,GO:0016020,GO:0016021,GO:0016043,GO:0016247,GO:0016248,GO:0016324,GO:0016462,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017081,GO:0017111,GO:0017157,GO:0019538,GO:0019725,GO:0019869,GO:0019899,GO:0019904,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022803,GO:0022804,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022898,GO:0023051,GO:0023056,GO:0030003,GO:0030004,GO:0030104,GO:0030135,GO:0030136,GO:0030154,GO:0030165,GO:0030554,GO:0030641,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0031984,GO:0032024,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032991,GO:0033993,GO:0034220,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035377,GO:0035381,GO:0035639,GO:0035690,GO:0035774,GO:0036094,GO:0036211,GO:0042044,GO:0042045,GO:0042175,GO:0042221,GO:0042391,GO:0042493,GO:0042592,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043170,GO:0043225,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043412,GO:0043492,GO:0044070,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045177,GO:0045852,GO:0045921,GO:0046677,GO:0046683,GO:0046883,GO:0046887,GO:0048232,GO:0048240,GO:0048468,GO:0048469,GO:0048515,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050801,GO:0050878,GO:0050891,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051087,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051453,GO:0051454,GO:0051591,GO:0051704,GO:0051716,GO:0055037,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0060081,GO:0060341,GO:0060627,GO:0061024,GO:0061178,GO:0061478,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070633,GO:0070646,GO:0070647,GO:0070887,GO:0071236,GO:0071310,GO:0071320,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0090087,GO:0090276,GO:0090277,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0097708,GO:0098588,GO:0098590,GO:0098656,GO:0098660,GO:0098661,GO:0098771,GO:0098772,GO:0098805,GO:0098827,GO:0098852,GO:0099095,GO:0099106,GO:0099133,GO:0099142,GO:1901265,GO:1901363,GO:1901529,GO:1901564,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902159,GO:1902161,GO:1902476,GO:1902941,GO:1902943,GO:1903530,GO:1903532,GO:1903793,GO:1903795,GO:1903797,GO:1903959,GO:1903961,GO:1904321,GO:1904322,GO:1904951,GO:2001225
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0058@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size198
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930323.8540127-CDS-H-paniculata_contig4375:15588..157801622930323.8540127-CDS-H-paniculata_contig4375:15588..15780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4375 15589..15780 -
1691481241.7183406-CDS-H-paniculata_contig4375:15588..157801691481241.7183406-CDS-H-paniculata_contig4375:15588..15780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4375 15589..15780 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930323.872952-UTR-H-paniculata_contig4375:15780..157861622930323.872952-UTR-H-paniculata_contig4375:15780..15786Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4375 15781..15786 -
1691481241.7305257-UTR-H-paniculata_contig4375:15780..157861691481241.7305257-UTR-H-paniculata_contig4375:15780..15786Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4375 15781..15786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4375.11105.1prot_H-paniculata_contig4375.11105.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4375 15589..15780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4375.11105.1

>prot_H-paniculata_contig4375.11105.1 ID=prot_H-paniculata_contig4375.11105.1|Name=mRNA_H-paniculata_contig4375.11105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MSTPIRQRVAIARAVLKNPPVLVLDEATSSLDAESERLVSEAIDRLVASR
TVLVIAHRQSTISK
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mRNA from alignment at H-paniculata_contig4375:15589..15786-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4375.11105.1 ID=mRNA_H-paniculata_contig4375.11105.1|Name=mRNA_H-paniculata_contig4375.11105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig4375:15589..15786- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTCCATGTCAACACCTATTCGCCAGCGTGTCGCGATCGCCCGTGCGGT
CTTGAAGAACCCACCTGTTCTGGTATTGGATGAGGCCACCTCGTCCCTAG
ATGCAGAATCGGAGCGTCTTGTCTCAGAGGCAATAGACAGGCTGGTGGCG
TCCCGCACGGTACTCGTCATTGCGCATCGCCAGTCAACCATAAGCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4375:15589..15786-

>mRNA_H-paniculata_contig4375.11105.1 ID=mRNA_H-paniculata_contig4375.11105.1|Name=mRNA_H-paniculata_contig4375.11105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig4375:15589..15786- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAACACCTATTCGCCAGCGTGTCGCGATCGCCCGTGCGGTCTTGAA
GAACCCACCTGTTCTGGTATTGGATGAGGCCACCTCGTCCCTAGATGCAG
AATCGGAGCGTCTTGTCTCAGAGGCAATAGACAGGCTGGTGGCGTCCCGC
ACGGTACTCGTCATTGCGCATCGCCAGTCAACCATAAGCAAGATGTCAAC
ACCTATTCGCCAGCGTGTCGCGATCGCCCGTGCGGTCTTGAAGAACCCAC
CTGTTCTGGTATTGGATGAGGCCACCTCGTCCCTAGATGCAGAATCGGAG
CGTCTTGTCTCAGAGGCAATAGACAGGCTGGTGGCGTCCCGCACGGTACT
CGTCATTGCGCATCGCCAGTCAACCATAAGCAAG
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