mRNA_H-paniculata_contig43708.11099.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43708.11099.1
Unique NamemRNA_H-paniculata_contig43708.11099.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43708.11099.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 9.200e-26
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 LWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCSDSRSGSRVPRPLG 216
            LWIP    ALQ RLMVCAHM+EAGHRG  AT+ RL+ YC W  ME  V +FV+QCLHC DS++G +VPRPLG
Sbjct: 1283 LWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLG 1354
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BLAST of mRNA_H-paniculata_contig43708.11099.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.770e-24
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 LWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCSDSRSGSRVPRPLG 216
            LWIP     +Q RLM+CAHM+EAGHRGV AT++RL  YC W  M+  V EFV+QCLHC DS+SG  VPRP G
Sbjct:  405 LWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFG 476
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BLAST of mRNA_H-paniculata_contig43708.11099.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.820e-24
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 LWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCSDSRSGSRVPRPLG 216
            LWIP     +Q RLM+CAHM+EAGHRGV AT++RL  YC W  M+  V EFV+QCLHC DS+SG  VPRP G
Sbjct: 1181 LWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFG 1252
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BLAST of mRNA_H-paniculata_contig43708.11099.1 vs. uniprot
Match: A0A2P4XBD9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XBD9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.430e-7
Identity = 23/72 (31.94%), Postives = 38/72 (52.78%), Query Frame = 1 
Query:    1 LWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCSDSRSGSRVPRPLG 216
            LW+P  E AL  R+++ AH +  GHRG++  +  + A      +      F+ +CL C   + G+ +PRP G
Sbjct:  413 LWVPEMEVALLQRILIVAHCETQGHRGIEPMMTTMTAIFEIANLTQVCRRFLSKCLLCKHVKGGNIIPRPWG 484
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43708.11099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE9.200e-2665.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE2.770e-2462.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE2.820e-2462.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A2P4XBD9_9STRA4.430e-731.94Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43708contigH-paniculata_contig43708:194..409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog4792.ETI57024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930323.2162538-CDS-H-paniculata_contig43708:193..4091622930323.2162538-CDS-H-paniculata_contig43708:193..409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43708 194..409 -
1691481241.443103-CDS-H-paniculata_contig43708:193..4091691481241.443103-CDS-H-paniculata_contig43708:193..409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43708 194..409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43708.11099.1prot_H-paniculata_contig43708.11099.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43708 194..409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43708.11099.1

>prot_H-paniculata_contig43708.11099.1 ID=prot_H-paniculata_contig43708.11099.1|Name=mRNA_H-paniculata_contig43708.11099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
LWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAE
FVRQCLHCSDSRSGSRVPRPLG
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mRNA from alignment at H-paniculata_contig43708:194..409-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43708.11099.1 ID=mRNA_H-paniculata_contig43708.11099.1|Name=mRNA_H-paniculata_contig43708.11099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig43708:194..409- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGGATTCCCCGAAACGAGCACGCGCTGCAGGCGCGGCTCATGGTATG
CGCCCACATGCAGGAGGCGGGCCACCGGGGCGTGGATGCTACGGTCAACC
GCCTTGCGGCATACTGCGTGTGGGACGGGATGGAGGCGAAAGTGGCGGAG
TTTGTCCGGCAGTGTTTGCACTGTTCAGATTCCAGGTCAGGGTCGCGGGT
GCCCCGCCCGTTAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig43708:194..409-

>mRNA_H-paniculata_contig43708.11099.1 ID=mRNA_H-paniculata_contig43708.11099.1|Name=mRNA_H-paniculata_contig43708.11099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig43708:194..409- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGGATTCCCCGAAACGAGCACGCGCTGCAGGCGCGGCTCATGGTATG
CGCCCACATGCAGGAGGCGGGCCACCGGGGCGTGGATGCTACGGTCAACC
GCCTTGCGGCATACTGCGTGTGGGACGGGATGGAGGCGAAAGTGGCGGAG
TTTGTCCGGCAGTGTTTGCACTGTTCAGATTCCAGGTCAGGGTCGCGGGT
GCCCCGCCCGTTAGGCCTGTGGATTCCCCGAAACGAGCACGCGCTGCAGG
CGCGGCTCATGGTATGCGCCCACATGCAGGAGGCGGGCCACCGGGGCGTG
GATGCTACGGTCAACCGCCTTGCGGCATACTGCGTGTGGGACGGGATGGA
GGCGAAAGTGGCGGAGTTTGTCCGGCAGTGTTTGCACTGTTCAGATTCCA
GGTCAGGGTCGCGGGTGCCCCGCCCGTTAGGC
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