mRNA_H-paniculata_contig43658.11094.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43658.11094.1
Unique NamemRNA_H-paniculata_contig43658.11094.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43658.11094.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 254 bits (650), Expect = 1.700e-78
Identity = 137/359 (38.16%), Postives = 218/359 (60.72%), Query Frame = 1
Query:    1 LKQSGRNWNNTLDDFLVGIGLNRSTTDSCLCFSRDGGGETNLLMAVYVDDLVIAGRR-EKADEFKHNISQRFRMKDVGSLSRVLEIEVRRERPNGIITISQGSYIHEVLKRYGFDECRGVSTPVGGKVK-ISALDRGNSDNSTEYRGMVGSLMYASTGTRSDIGYAVHQAARHMEDPYREDFSTCKRLFHYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYIFNLNGGAISWCSWKQQLVTWSSTEAEYVAAGEAGKEMVYLRELLGSIGFECMGSTTLFEDNISAVNLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQIGDQLARILTKGLSRIQLQRLRNL 1071
            LKQS R WN+ LD+ L  IG  ++ +D C+    + G     ++A++VDD+++AG+  EK  + K +I++RF++KD+G L  +L ++V +E  +G + I Q +Y   ++K+YG + C+ V TPV    K +SA++     N  EY+  VGSL+Y S+ TR DI +AV+  A+   +   E ++  KR+F YL    + G+ +   +N   + GF DADWA D+ DRKST+GY F +NG A+SW S KQ  V  S+ EAEYVA   A +E +++R+LL  +        T++EDN SA+ +SK    H R+KHI +++H +R+ + +  L + Y   G  LA + TKG+ + Q ++LR L
Sbjct:   23 LKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376          
BLAST of mRNA_H-paniculata_contig43658.11094.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 249 bits (637), Expect = 5.730e-76
Identity = 135/364 (37.09%), Postives = 212/364 (58.24%), Query Frame = 1
Query:    1 LKQSGRNWNNTLDDFLVGIGLNRSTTDSCLCFSRDGGGETNLLMAVYVDDLVIAGRREKADEF-KHNISQRFRMKDVGSLSRVLEIEVRRERPNGIITISQGSYIHEVLKRYGFDECRGVSTPVGGKVKIS------ALDRGNSDNSTEYRGMVGSLMYASTGTRSDIGYAVHQAARHMEDPYREDFSTCKRLFHYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYIFNLNGGAISWCSWKQQLVTWSSTEAEYVAAGEAGKEMVYLRELLGSIGFECMGSTT-LFEDNISAVNLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQIGDQLARILTKGLSRIQLQRLRN 1068
            LKQS R WN T+DDF++ +G  +  +D C+   RDG  +  + +A+YVDDLV+A   ++  E  KH +S+RF M D+G L   L +E++  R +G +T+ Q  ++  +L ++G  + + V TP    +K++           ++  +  YR +VG+LMY    TR D+  AV   ++   DP    +   KR+  YL   P  G+ F  + +  G+ G+ DADWA D+E R+ST+GY F +NGG ISW S KQ+ V  SSTEAEY+A  EA +E V+L+  L  +G         ++EDN  ++ L+K    H RTKHI +R+H +RE + +G + L+Y+   D LA ++TK ++ +Q Q LR+
Sbjct:   43 LKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDG--QDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQFQVLRS 403          
BLAST of mRNA_H-paniculata_contig43658.11094.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 245 bits (626), Expect = 1.330e-74
Identity = 135/349 (38.68%), Postives = 204/349 (58.45%), Query Frame = 1
Query:    4 KQSGRNWNNTLDDFLVGIGLNRSTTDSCLCFSRDGGGETNLLMAVYVDDLVIAGR-REKADEFKHNISQRFRMKDVGSLSRVLEIEVRRERPNGIITISQGSYIHEVLKRYGFDECRGVSTPVGGKVK-ISALDRGNSDNSTEYRGMVGSLMYASTGTRSDIGYAVHQAARHMEDPYREDFSTCKRLFHYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYIFNLNGGAISWCSWKQQLVTWSSTEAEYVAAGEAGKEMVYLRELLGSIGFECMGSTTLFEDNISAVNLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQIGDQLARILTKGLSR 1044
            KQ+ R WN+ L+  L G G +RS  D C+   R     +  ++ VYVDDL+I  R + +  E K  + + F +K++G L   L IE+ R R +  I ++Q +YI  + +++G ++C+ V TP     K +   +         YR +VG+LMY +T TR DI  AV + A+  E   +  +   KR+  YL T  DLG+ F G + G  L G+ DA WA D++ R+STTGY+F LNG AISW S +Q  V  SSTEAEY+A   A +E V+LR+LL  +G EC+ +TT+F+DN   + L+K    H RTKHI +++H +RE + + ++ L+Y    + +A   TK L+R
Sbjct:   49 KQAARQWNSKLNKHLEGQGFHRSAADPCVYVRRSDSKFS--IIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPAEDEVFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 394          
BLAST of mRNA_H-paniculata_contig43658.11094.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 251 bits (642), Expect = 5.280e-74
Identity = 143/361 (39.61%), Postives = 216/361 (59.83%), Query Frame = 1
Query:    1 LKQSGRNWNNTLDDFLVGIGLNRSTTDSCLCFSRDGGGETNLLMAVYVDDLVIAGRRE-KADEFKHNISQRFRMKDVGSLSRVLEIEVRRERPNGIITISQGSYIHEVLKRYGFDECRGVSTPV--GGKVKISALDRGNSDNSTEYRGMVGSLMYASTGTRSDIGYAVHQAARHMEDPYREDFSTCKRLFHYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYIFNLNGGAISWCSWKQQLVTWSSTEAEYVAAGEAGKEMVYLRELLGSIGFECMGSTTLFEDNISAVNLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQIGDQLARILTKGLSRIQLQRLRNLL 1074
            LKQS R WN+ LD  L  +G  ++T D C+ + ++ GGE   ++AVYVDD+++AG+ + K +E K  ++++F+MKD+G L   L ++V  +  +  I I Q +Y   VL+R+G +  +  STPV  G K+K +A D    D    Y+  VG L+Y ST TR DI YAV   AR   DP  E +   KR+  YL+   D+G+ + G        G+ DADWA D++DRKST+GY+F ++  AISW S KQ  V  S+ EAEY+A   A +E V+L++LL  +  +  G   + EDN +A+ ++K +  H R KHI +++H IRE +    + L+Y    + +A I TKGLS +Q  +LR +L
Sbjct:  134 LKQSPRCWNSVLDRKLKNMGFVQTTGDPCI-YVKEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQ-VNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 491          
BLAST of mRNA_H-paniculata_contig43658.11094.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 250 bits (638), Expect = 9.620e-74
Identity = 134/359 (37.33%), Postives = 217/359 (60.45%), Query Frame = 1
Query:    1 LKQSGRNWNNTLDDFLVGIGLNRSTTDSCLCFSRDGGGETNLLMAVYVDDLVIAGRR-EKADEFKHNISQRFRMKDVGSLSRVLEIEVRRERPNGIITISQGSYIHEVLKRYGFDECRGVSTPVGGKVK-ISALDRGNSDNSTEYRGMVGSLMYASTGTRSDIGYAVHQAARHMEDPYREDFSTCKRLFHYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYIFNLNGGAISWCSWKQQLVTWSSTEAEYVAAGEAGKEMVYLRELLGSIGFECMGSTTLFEDNISAVNLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQIGDQLARILTKGLSRIQLQRLRNL 1071
            LKQS R WN+ LD+ L  IG  ++ +D C+    + G     ++A++VDD+++AG+  EK  + K +I++RF++KD+G L  +L ++V +E  +  + I Q +Y   ++K+YG + C+ V TPV    K +SA++     N  E++  VGSL+Y S+ TR DI +AV+  A+   +P  E ++  KR+F YL    + G+ +   +N   + GF DADWA D+ DRKST+GY F +NG A+SW S KQ  V  S+  AEYVA   A +E +++R+LL  +        T++EDN SA+ +SK    H R+KHI ++++ +R+ + +  L + Y   G  LA + TKG+ + Q ++LR L
Sbjct:  298 LKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 651          
BLAST of mRNA_H-paniculata_contig43658.11094.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 256 bits (654), Expect = 4.560e-73
Identity = 137/359 (38.16%), Postives = 218/359 (60.72%), Query Frame = 1
Query:    1 LKQSGRNWNNTLDDFLVGIGLNRSTTDSCLCFSRDGGGETNLLMAVYVDDLVIAGRR-EKADEFKHNISQRFRMKDVGSLSRVLEIEVRRERPNGIITISQGSYIHEVLKRYGFDECRGVSTPVGGKVK-ISALDRGNSDNSTEYRGMVGSLMYASTGTRSDIGYAVHQAARHMEDPYREDFSTCKRLFHYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYIFNLNGGAISWCSWKQQLVTWSSTEAEYVAAGEAGKEMVYLRELLGSIGFECMGSTTLFEDNISAVNLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQIGDQLARILTKGLSRIQLQRLRNL 1071
            LKQS R WN+ LD+ L  IG  ++ +D C+    + G     ++A++VDD+++AG+  EK  + K +I++RF++KD+G L  +L ++V +E  +  + I Q +Y   ++K+YG + C+ V TPV    K +SA++     N  EY+  VGSL+Y S+ TR DI +AV+  A+   +P  E ++  KR+F YL    + G+ +   +N   + GF DADWA D+ DRKST+GY F +NG A+SW S KQ  V  S+ EAEYVA   A +E +++R+LL  +        T++EDN SA+ +SK    H R+KHI +++H +R+ + +  L + Y   G  LA + TKG+ + Q ++LR L
Sbjct:  912 LKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 1265          
BLAST of mRNA_H-paniculata_contig43658.11094.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 239 bits (610), Expect = 1.080e-72
Identity = 142/357 (39.78%), Postives = 202/357 (56.58%), Query Frame = 1
Query:    1 LKQSGRNWNNTLDDFLVGIGLNRSTTDSCLCFSRDGGGETNLLMAVYVDDLV-IAGRREKADEFKHNISQRFRMKDVGSLSRVLEIEVRRERPNGIITISQGSYIHEVLKRYGFDECRGVSTPVGGKVKISALDR-GNSDNSTEYRGMVGSLMYASTGTRSDIGYAVHQAARHMEDPYREDFSTCKRLFHYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYIFNLNGGAISWCSWKQQLVTWSSTEAEYVAAGEAGKEMVYLRELLGSIGFECMGSTTLFEDNISAVNLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQIGDQLARILTKGLSRIQLQRLR 1065
            LKQS R WN     F++ +G  +S++D C+        E   ++AVYVDDL+ I    E  DE K  + +R++MKD+G LS +L I V +++    I + Q  YI  +LK+YG D+   V+TP    VK+   D   N  + + Y+ MVGSL+YA+  TR DI  AV   ++   +P     +  KR+  YL    +L + F    N   L GF DADWA D++DR STTG IF L+GGA+SW S KQ  V  S+ EAEYVA  +A +E  +LR LL  +G      T + EDN  A+ ++K    H RTKHI +R+H IRE +++G + L+Y       A ILTK L+R + +  R
Sbjct:   10 LKQSPRCWNKEFTTFMMDLGFKQSSSDPCVFVRLSQELE---IIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGN-KDLIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFR 361          
BLAST of mRNA_H-paniculata_contig43658.11094.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID)

HSP 1 Score: 255 bits (651), Expect = 1.250e-72
Identity = 138/360 (38.33%), Postives = 212/360 (58.89%), Query Frame = 1
Query:    1 LKQSGRNWNNTLDDFLVGIGLNRSTTDSCLCFSRDGGGETN--LLMAVYVDDLVIAGRR-EKADEFKHNISQRFRMKDVGSLSRVLEIEVRRERPNGIITISQGSYIHEVLKRYGFDECRGVSTPVGGKVKISAL-DRGNSDNSTEYRGMVGSLMYASTGTRSDIGYAVHQAARHMEDPYREDFSTCKRLFHYLSTVPDLGITFGGKSNGHGL-EGFVDADWAEDVEDRKSTTGYIFNLNGGAISWCSWKQQLVTWSSTEAEYVAAGEAGKEMVYLRELLGSIGFECMGSTTLFEDNISAVNLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQIGDQLARILTKGLSRIQLQRLR 1065
            LKQS R WN  +D+FL   G  R+  D C+   +   G+ +  L++AVYVDDL+IA    +   E K  + +RF M+D   +  +L ++V+R+R N  +TI Q +++  VL R+  +EC+ V+TP+   +K   L D        +Y+  +G L YAS GTR DI  AV   ++HM  P ++ +   KR+  YL    D G+ + G  +G  L  GF DADWA D++ RKST+GY+F +    +SW S +Q +V  S TEAEYVA  +A +E+++LR L   + FE    T +FEDN  A+ L+K    H RTKHI +++H +R+ + + ++ L+Y    + +A +LTKGL R Q ++LR
Sbjct:  928 LKQSARCWNEKMDEFLKESGFTRNDADPCIYHKQITKGDKSFTLIVAVYVDDLLIACNNIQILREQKQKLGERFEMEDKSEVHFILGMQVKRDRKNRRLTIDQNAFLSSVLNRFNMNECKPVATPLEPSMKFEKLADDEEIVKLKDYQSAIGCLTYASIGTRPDISAAVGVLSQHMSKPGKQHWIGVKRVLRYLKGTLDYGLIYEGSESGDILLHGFADADWAGDIDTRKSTSGYVFKVGNSTVSWKSKRQSIVALSKTEAEYVALSQATQEVIWLRTLFKGMDFEQTDPTKMFEDNQGAIELAKNQPNHSRTKHIDIKFHHVRDAVAKKVIDLEYCPTDEMIADLLTKGLPRPQFEKLR 1287          
BLAST of mRNA_H-paniculata_contig43658.11094.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 246 bits (628), Expect = 2.080e-72
Identity = 140/361 (38.78%), Postives = 214/361 (59.28%), Query Frame = 1
Query:    1 LKQSGRNWNNTLDDFLVGIGLNRSTTDSCLCFSRDGGGETNLLMAVYVDDLVIAGRRE-KADEFKHNISQRFRMKDVGSLSRVLEIEVRRERPNGIITISQGSYIHEVLKRYGFDECRGVSTPV--GGKVKISALDRGNSDNSTEYRGMVGSLMYASTGTRSDIGYAVHQAARHMEDPYREDFSTCKRLFHYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYIFNLNGGAISWCSWKQQLVTWSSTEAEYVAAGEAGKEMVYLRELLGSIGFECMGSTTLFEDNISAVNLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQIGDQLARILTKGLSRIQLQRLRNLL 1074
            LKQS R WN+ LD  L  +G  ++T D C+ + ++ GGE   ++AVYVDD+++AG+ + K +E K  ++++F+MKD+G     L ++V ++  +  I I Q +Y   VL+R+G +  +  STPV  G K+K +A D    D    Y+  VG L+Y ST TR DI YAV   AR    P  E +   KR+  YL+   D+G+ + G        G+ DADWA D++DRKST+GY+F ++  AISW S KQ  V  S+ EAEY+    A +E V+L++LL  +  +  G   + EDN +A+ ++K +  H R KHI +++H IRE +    + L+Y    + +A I TKGLS +Q  +LR +L
Sbjct:  282 LKQSPRCWNSVLDRKLKNMGFVQTTGDPCI-YVKEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQ-VNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 639          
BLAST of mRNA_H-paniculata_contig43658.11094.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 254 bits (648), Expect = 3.490e-72
Identity = 140/367 (38.15%), Postives = 214/367 (58.31%), Query Frame = 1
Query:    1 LKQSGRNWNNTLDDFLVGIGLNRSTTDSCL---CFSRDGGGETNLLMAVYVDDLV-IAGRREKADEFKHNISQRFRMKDVGSLSRVLEIEVRRERPNGIITISQGSYIHEVLKRYGFDECRGVSTPVGGKVKISALDRGNSDNST-----EYRGMVGSLMYASTGTRSDIGYAVHQAARHMEDPYREDFSTCKRLFHYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYIFNLNGGAISWCSWKQQLVTWSSTEAEYVAAGEAGKEMVYLRELLGSIGFECMGSTTLFEDNISAVNLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQIGDQLARILTKGLSRIQLQRLRNLL 1074
            LKQ+ R WN+ +D FL+  G  +S  D C+      R  G    +++A+YVDD++  +   E   + K  +++RF+++D+G +S VL + V+R R    +TI+Q  Y+  VLKR+G  EC+ VSTP+    K  +L    S+N T     EY+  +G L YA+  TR D+  AV   +++M  P ++ +   KR+  Y+      G+TF    N   L G+ DADW  DVE R+ST+GY+F +    ISWCS +Q  V+ S+TEAEY+A   A +E V+LR LL  IG +    +T+FEDN  A+ LSK    H RTKHI V +H IRE +   I+ +KY +  + LA ++TK L ++  +R R+++
Sbjct:  966 LKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVLKRFGMQECKAVSTPLEPGRKFESL----SENDTPIDVREYQMAIGCLTYATNATRPDLAAAVGILSKYMARPGKDHWQGVKRVLRYVKGTLHSGLTFTAHGNNPVLYGYADADWGGDVETRRSTSGYVFQIQNNTISWCSKRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSFERFRDMM 1328          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43658.11094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9M6E1_PARCT1.700e-7838.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB98_PHYRM5.730e-7637.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB17_PHYRM1.330e-7438.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT5.280e-7439.61Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9HZ03_PARCT9.620e-7437.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT4.560e-7338.16Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0S7JP25_9TELE1.080e-7239.78POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A7M6DPI8_9CNID1.250e-7238.33Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A6S7JEY7_PARCT2.080e-7238.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HNY1_PARCT3.490e-7238.15Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43658contigH-paniculata_contig43658:515..1672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score250.0
Seed ortholog evalue1.7e-63
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size1080
Cds size1080
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930322.172086-CDS-H-paniculata_contig43658:514..11961622930322.172086-CDS-H-paniculata_contig43658:514..1196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43658 515..1196 -
1691481241.0080569-CDS-H-paniculata_contig43658:514..11961691481241.0080569-CDS-H-paniculata_contig43658:514..1196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43658 515..1196 -
1622930322.19336-CDS-H-paniculata_contig43658:1274..16721622930322.19336-CDS-H-paniculata_contig43658:1274..1672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43658 1275..1672 -
1691481241.0209868-CDS-H-paniculata_contig43658:1274..16721691481241.0209868-CDS-H-paniculata_contig43658:1274..1672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43658 1275..1672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43658.11094.1prot_H-paniculata_contig43658.11094.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43658 515..1672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43658.11094.1

>prot_H-paniculata_contig43658.11094.1 ID=prot_H-paniculata_contig43658.11094.1|Name=mRNA_H-paniculata_contig43658.11094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=360bp
LKQSGRNWNNTLDDFLVGIGLNRSTTDSCLCFSRDGGGETNLLMAVYVDD
LVIAGRREKADEFKHNISQRFRMKDVGSLSRVLEIEVRRERPNGIITISQ
GSYIHEVLKRYGFDECRGVSTPVGGKVKISALDRGNSDNSTEYRGMVGSL
MYASTGTRSDIGYAVHQAARHMEDPYREDFSTCKRLFHYLSTVPDLGITF
GGKSNGHGLEGFVDADWAEDVEDRKSTTGYIFNLNGGAISWCSWKQQLVT
WSSTEAEYVAAGEAGKEMVYLRELLGSIGFECMGSTTLFEDNISAVNLSK
GSGAHCRTKHIGVRWHGIREWIREGILALKYMQIGDQLARILTKGLSRIQ
LQRLRNLLM*
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mRNA from alignment at H-paniculata_contig43658:515..1672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43658.11094.1 ID=mRNA_H-paniculata_contig43658.11094.1|Name=mRNA_H-paniculata_contig43658.11094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig43658:515..1672- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAGCAGAGCGGCCGAAACTGGAATAACACTCTAGACGATTTTCTTGT TGGGATAGGACTCAACCGTTCCACTACCGACTCATGCTTGTGCTTTTCCC GCGATGGTGGGGGAGAAACAAACCTTTTGATGGCCGTCTATGTTGACGAC CTGGTCATTGCTGGCCGTCGTGAGAAAGCAGACGAGTTCAAGCATAACAT AAGTCAGCGCTTTAGGATGAAAGACGTGGGATCTCTCTCGCGCGTGTTGG AAATAGAAGTACGACGTGAACGCCCTAATGGTATCATAACAATCTCGCAG GGTAGCTACATCCACGAGGTACTTAAAAGATACGGTTTTGACGAGTGTCG AGGAGTATCCACCCCTGTAGGGGGAAAAGTGAAGATTTCGGCACTCGAGT CGACTGACAAGCCCTCCGACCAGAAGTCACTTAGAGCTGTACTGTCGGAC ATAGGCGCAGGAGTACAAGAAAGTAGCAGAGGCAACAGTGACAATTCAAC TGAATACAGAGGCATGGTAGGATCTCTCATGTATGCCTCAACAGGAACTA GATCTGATATAGGATACGCGGTACACCAAGCAGCACGTCATATGGAGGAC CCATATCGGGAAGATTTCAGTACATGCAAGCGCCTTTTTCATTATCTCAG TACTGTGCCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACG GTCTGGAAGGATTCGTGGATGCCGATTGGGCGGAAGATGTCGAGGACCGA AAGTCCACAACAGGATATATTTTCAACCTGAATGGTGGTGCAATAAGTTG GTGCTCTTGGAAGCAACAGTTAGTTACGTGGTCCAGTACAGAGGCAGAGT ACGTTGCTGCAGGAGAAGCGGGAAAGGAGATGGTATATCTTAGGGAGTTA CTAGGATCGATAGGCTTCGAGTGCATGGGGAGCACGACATTATTTGAGGA CAATATATCAGCTGTCAATCTCAGTAAGGGATCTGGCGCACACTGTAGGA CAAAGCACATCGGAGTGCGCTGGCACGGAATTCGGGAGTGGATTCGGGAA GGAATTTTGGCATTGAAATACATGCAGATCGGCGATCAACTTGCTCGCAT TTTAACGAAAGGACTAAGCAGAATACAGCTTCAGAGACTGAGAAATTTAC TCATGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig43658:515..1672-

>mRNA_H-paniculata_contig43658.11094.1 ID=mRNA_H-paniculata_contig43658.11094.1|Name=mRNA_H-paniculata_contig43658.11094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2160bp|location=Sequence derived from alignment at H-paniculata_contig43658:515..1672- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAGCAGAGCGGCCGAAACTGGAATAACACTCTAGACGATTTTCTTGT
TGGGATAGGACTCAACCGTTCCACTACCGACTCATGCTTGTGCTTTTCCC
GCGATGGTGGGGGAGAAACAAACCTTTTGATGGCCGTCTATGTTGACGAC
CTGGTCATTGCTGGCCGTCGTGAGAAAGCAGACGAGTTCAAGCATAACAT
AAGTCAGCGCTTTAGGATGAAAGACGTGGGATCTCTCTCGCGCGTGTTGG
AAATAGAAGTACGACGTGAACGCCCTAATGGTATCATAACAATCTCGCAG
GGTAGCTACATCCACGAGGTACTTAAAAGATACGGTTTTGACGAGTGTCG
AGGAGTATCCACCCCTGTAGGGGGAAAAGTGAAGATTTCGGCACTCGACT
CAAGCAGAGCGGCCGAAACTGGAATAACACTCTAGACGATTTTCTTGTTG
GGATAGGACTCAACCGTTCCACTACCGACTCATGCTTGTGCTTTTCCCGC
GATGGTGGGGGAGAAACAAACCTTTTGATGGCCGTCTATGTTGACGACCT
GGTCATTGCTGGCCGTCGTGAGAAAGCAGACGAGTTCAAGCATAACATAA
GTCAGCGCTTTAGGATGAAAGACGTGGGATCTCTCTCGCGCGTGTTGGAA
ATAGAAGTACGACGTGAACGCCCTAATGGTATCATAACAATCTCGCAGGG
TAGCTACATCCACGAGGTACTTAAAAGATACGGTTTTGACGAGTGTCGAG
GAGTATCCACCCCTGTAGGGGGAAAAGTGAAGATTTCGGCACTCGACAGA
GGCAACAGTGACAATTCAACTGAATACAGAGGCATGGTAGGATCTCTCAT
GTATGCCTCAACAGGAACTAGATCTGATATAGGATACGCGGTACACCAAG
CAGCACGTCATATGGAGGACCCATATCGGGAAGATTTCAGTACATGCAAG
CGCCTTTTTCATTATCTCAGTACTGTGCCTGACCTCGGCATTACGTTCGG
CGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTGGATGCCGATTGGG
CGGAAGATGTCGAGGACCGAAAGTCCACAACAGGATATATTTTCAACCTG
AATGGTGGTGCAATAAGTTGGTGCTCTTGGAAGCAACAGTTAGTTACGTG
GTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGA
TGGTATATCTTAGGGAGTTACTAGGATCGATAGGCTTCGAGTGCATGGGG
AGCACGACATTATTTGAGGACAATATATCAGCTGTCAATCTCAGTAAGGG
ATCTGGCGCACACTGTAGGACAAAGCACATCGGAGTGCGCTGGCACGGAA
TTCGGGAGTGGATTCGGGAAGGAATTTTGGCATTGAAATACATGCAGATC
GGCGATCAACTTGCTCGCATTTTAACGAAAGGACTAAGCAGAATACAGCT
TCAGAGACTGAGAAATTTACTCATGTAACAGAGGCAACAGTGACAATTCA
ACTGAATACAGAGGCATGGTAGGATCTCTCATGTATGCCTCAACAGGAAC
TAGATCTGATATAGGATACGCGGTACACCAAGCAGCACGTCATATGGAGG
ACCCATATCGGGAAGATTTCAGTACATGCAAGCGCCTTTTTCATTATCTC
AGTACTGTGCCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCA
CGGTCTGGAAGGATTCGTGGATGCCGATTGGGCGGAAGATGTCGAGGACC
GAAAGTCCACAACAGGATATATTTTCAACCTGAATGGTGGTGCAATAAGT
TGGTGCTCTTGGAAGCAACAGTTAGTTACGTGGTCCAGTACAGAGGCAGA
GTACGTTGCTGCAGGAGAAGCGGGAAAGGAGATGGTATATCTTAGGGAGT
TACTAGGATCGATAGGCTTCGAGTGCATGGGGAGCACGACATTATTTGAG
GACAATATATCAGCTGTCAATCTCAGTAAGGGATCTGGCGCACACTGTAG
GACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGGGAGTGGATTCGGG
AAGGAATTTTGGCATTGAAATACATGCAGATCGGCGATCAACTTGCTCGC
ATTTTAACGAAAGGACTAAGCAGAATACAGCTTCAGAGACTGAGAAATTT
ACTCATGTAA
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