mRNA_H-paniculata_contig43645.11091.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43645.11091.1
Unique NamemRNA_H-paniculata_contig43645.11091.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43645.11091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43645contigH-paniculata_contig43645:297..1069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930321.876288-CDS-H-paniculata_contig43645:296..4601622930321.876288-CDS-H-paniculata_contig43645:296..460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43645 297..460 +
1691481240.9024556-CDS-H-paniculata_contig43645:296..4601691481240.9024556-CDS-H-paniculata_contig43645:296..460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43645 297..460 +
1622930321.8929949-CDS-H-paniculata_contig43645:965..10681622930321.8929949-CDS-H-paniculata_contig43645:965..1068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43645 966..1068 +
1691481240.9108973-CDS-H-paniculata_contig43645:965..10681691481240.9108973-CDS-H-paniculata_contig43645:965..1068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43645 966..1068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43645.11091.1prot_H-paniculata_contig43645.11091.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43645 297..1068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43645.11091.1

>prot_H-paniculata_contig43645.11091.1 ID=prot_H-paniculata_contig43645.11091.1|Name=mRNA_H-paniculata_contig43645.11091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
IAVTLHEVAQCVREVDGPEKAERYFRRALKIEQTKLGTRDIQVADTLHRL
GQCIRESRRPKEADVYLRRSLDIKTEKLDKNDLRTAMTL
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mRNA from alignment at H-paniculata_contig43645:297..1069+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43645.11091.1 ID=mRNA_H-paniculata_contig43645.11091.1|Name=mRNA_H-paniculata_contig43645.11091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=773bp|location=Sequence derived from alignment at H-paniculata_contig43645:297..1069+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGCCGTCACCTTACACGAAGTCGCGCAGTGCGTGCGGGAGGTGGATGG
GCCTGAAAAGGCGGAAAGGTACTTCCGACGCGCGTTGAAGATCGAGCAAA
CCAAGCTGGGGACTCGGGACATACAAGTAGCGGACACACTGCATCGCCTC
GGGCAGTGCATTCGGTGAGATATCCTTAATCGGTCATTGTATGGTACTAG
CAGGGACGCGACCGCTACGCCAGAGTGGTACGTGACACTTGGAAGAAGAT
CCCGGGTGAGCATAGAATGAAAAATGTTCCGAGAGTAACGTCATCGTTGT
CGCCATCATCAACATCACTAACATCATCATATCATCGTCATCGTCATCAT
TACTGTATTAGGCCATAATCATCCGCCATAGAACAGTAGCTGTGGTTGCG
ACAAGTTAAGGTGGGGAAGCGAGGTTAAATGGGTGAGGGGGGCGGAGGGT
GGGAAAAGAAGGAAATAGGTGTATGCGACATATAACCTGAAATGCGATTC
AAGACCTCCTCTTGATTTTGTAGAACGCCTGTATCCGTACACTCGTGATG
CCGGAGTTGTGTGCATCCTCCACTTTACAATGCGCATACCCGTCAGAGCC
AATACACACAACGAAAGTGCAATGGGTGGGTACATTTGACTGTGGTCCAA
ATCCCCGCTCCATTTACAGGGAGTCACGAAGGCCCAAAGAAGCCGACGTG
TATCTCCGGAGATCGCTGGACATCAAAACGGAGAAGCTTGATAAGAACGA
TCTCCGGACGGCAATGACGTTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig43645:297..1069+

>mRNA_H-paniculata_contig43645.11091.1 ID=mRNA_H-paniculata_contig43645.11091.1|Name=mRNA_H-paniculata_contig43645.11091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig43645:297..1069+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGCCGTCACCTTACACGAAGTCGCGCAGTGCGTGCGGGAGGTGGATGG
GCCTGAAAAGGCGGAAAGGTACTTCCGACGCGCGTTGAAGATCGAGCAAA
CCAAGCTGGGGACTCGGGACATACAAGTAGCGGACACACTGCATCGCCTC
GGGCAGTGCATTCGATAGCCGTCACCTTACACGAAGTCGCGCAGTGCGTG
CGGGAGGTGGATGGGCCTGAAAAGGCGGAAAGGTACTTCCGACGCGCGTT
GAAGATCGAGCAAACCAAGCTGGGGACTCGGGACATACAAGTAGCGGACA
CACTGCATCGCCTCGGGCAGTGCATTCGGGAGTCACGAAGGCCCAAAGAA
GCCGACGTGTATCTCCGGAGATCGCTGGACATCAAAACGGAGAAGCTTGA
TAAGAACGATCTCCGGACGGCAATGACGTTGGGAGTCACGAAGGCCCAAA
GAAGCCGACGTGTATCTCCGGAGATCGCTGGACATCAAAACGGAGAAGCT
TGATAAGAACGATCTCCGGACGGCAATGACGTTG
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