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Homology
BLAST of mRNA_H-paniculata_contig4352.11075.1 vs. uniprot
Match: D7FHP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP0_ECTSI) HSP 1 Score: 137 bits (346), Expect = 7.480e-36 Identity = 101/251 (40.24%), Postives = 132/251 (52.59%), Query Frame = 3
Query: 3 DREALFEKMITGPGIMATKYPRRGKPRNVILTLMMPEGDPPQEQQPQQTSR----------VSAFNELAGVVLSEDDSTESPSGSLSS-----RLSGSTMG-----------------------SEVVQYR---------SLKSLGNLQLVWNRKGRGSGSLKVAEVIDALAGLQSQVLRPVGVELRKRAAT-------DAGGKEEEEK-YASLLTGRRSLDLKFSTPLARNRFVSAFKTFAWETDTPKAG 590
DREALFE M++GPGI ATK+PRRGKPR+V+LTL+ P G V++F+ A + SP+ S SS R G T S+ Q+ SLK + +L+L WNR+ GSL++ EVI+A+AG+ SQ+LRPV ELR+RAA+ + G +EEEE + SL T RR+LDLKFST RNRF+ AFKT AWET +AG
Sbjct: 20 DREALFENMMSGPGIPATKFPRRGKPRSVVLTLVRPGGXXXXXXXXXXXXXXXXXXXXXXGVTSFSSTASPSMFGGSEEVSPASSFSSSVGRGRQRGITSSFGRTRFPAERDLFSKPSYKRSFRSQPHQHXXXXXXQGPTSLKGVLDLELEWNRQRGRKGSLRLGEVIEAIAGIDSQILRPVCEELRRRAASVGESRVGEGGEREEEEDTFVSLRTNRRTLDLKFSTVPIRNRFMLAFKTLAWETAAARAG 270
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 741 |
| Cds size | 609 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4352.11075.1 >prot_H-paniculata_contig4352.11075.1 ID=prot_H-paniculata_contig4352.11075.1|Name=mRNA_H-paniculata_contig4352.11075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp
MITGPGIMATKYPRRGKPRNVILTLMMPEGDPPQEQQPQQTSRVSAFNEL
AGVVLSEDDSTESPSGSLSSRLSGSTMGSEVVQYRSLKSLGNLQLVWNRK
GRGSGSLKVAEVIDALAGLQSQVLRPVGVELRKRAATDAGGKEEEEKYAS
LLTGRRSLDLKFSTPLARNRFVSAFKTFAWETDTPKAGIPNKPPQVLRHY
AR* back to topmRNA from alignment at H-paniculata_contig4352:936..5036+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4352.11075.1 ID=mRNA_H-paniculata_contig4352.11075.1|Name=mRNA_H-paniculata_contig4352.11075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4101bp|location=Sequence derived from alignment at H-paniculata_contig4352:936..5036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACCGAGAAGCCCTGTTTGAAAAGATGATCACCGGCCCTGGTATCATG
GCCACCAAGTACCCACGGCGCGGGAAGCCACGGAATGTAATTTTGACGCT
GATGATGCCTGAGGGTGATCCCCCACAAGAACAACAACCACAACAAACTA
GCCGGGTCTCGGCGTTTAACGGCGAGTATCTATTCATGTACTTGATTTGA
TGGCTATACGTTATGTGATACATTTTGTTTCGTGACTTGAGATTATGAAA
TATGACTATGGCTACGCCCGGTGCAGTTCGTGGTTGTCCTTAACCCACGG
GCTCGCTCCCCTCGCAGCGGGGGCTCGCGTAGTGAACAGCGCCGCTTGCT
GTGCTTACATGAAGATTCTGTTTTTCAGGAGTTCTTGAGAACAGAGTTTG
AGAAATCATCCGAAATGATAATGATAACGACGGCGGCCACTACGACCACC
ACCTTGCCGTGATTAAATAATAATGATACAACCAGGTGTGTAGAGGCAGT
GATGAGGGTACTTTGGTGGTGTGTAGGTCGTGCGGTCTCTGTGATTTTGT
CGTCGACTTGACGTCACGCTCTCCATGTAGGCATATAGGGCGTGACCGGT
GTATGTTGGTGAAATATCTCTTGTTATAGATGTTACTGGCGTGTTTATAT
GCATTACAGGGATACGTCCATAGCGGCCGAAGACTCAAGAAATACGATAT
CGTCGTGTTTGGGTATAGAATTGATTATATCAAATACCCACCCACCCCCA
TCATATCCTGGGGTGGCGGGTAGGAAATCGAGATGCACTTGGTGTGCGAA
ATGCTCATGGTCTTGGGTGGGGGTGAGGGTATAGTAACAGTAGCGAGAGC
TGGCAGGGGTCGTGCTTTCCGAGGTACCCAACAGGTCTCAACCCTCAGGA
ACTTCAGCCCCCGTAATCAGCTAGTTTTGCGGAGTGCCTGTTCATTGTTT
GTTCACGAACAAAGTTGGTATTTGCCCGCACTCCTTCAACACTAAATCGT
AGTTGAAAGCCCCCAAAATGGAAAGGAATAGATCCCTCTTTGCACGTGAG
ATGCACTAACCAGCTCTCGAGAGCTCGAAGCATTCTGTCTAGGTACTAGT
CATTATTTACAACTAGTCACTGGCAATACTACCTCTTGGCCGTTACAAAA
TCCGGTTCGCGAACGGGTTTCGTAGCGACCAAGATACAAAGATTTTAAAT
AGCAACCGGTAGCGAATATAATGATGAATACATCGACAGAAAGCTTATCC
AGCTCCAGGCATTTGATTAGCTTATCTCAAGCCGGGGTTCAACACGGGGG
ATTTTTTTTATTGACCGAGGGGGATCTTATTATATTAGATTTAGAGAAGA
ACCAGAACGAATAAATCGTACCGGGCTTTTTTGGGGGGGTAACGACCCCA
AATAATAAAAAAAGTGCTGTAAAGCTATCGCCTAATCAGGGGGTCACAGG
CTCCTTTTGGCTCAACGTAGCTGCTAGCACTTGGAGAAGGTTTTAATGAA
CGAGTCTAAGCCCTAACGGGTAGGACACGGCTAGGGGTAACCCATTGCCG
ATGACTGGACGCAAGTGTGATCAAGGGTTTTAACGAGTGCGGATTCTGCT
TCTCAAAGGGCAGTCTAAAACCGAACGCCAAAACGGACAAGTCTCGTACT
ACGGCTACCCCACAATTCCCTCGGTTTTTGAGCGTAGAACCGAGGGGAGA
CCGACGTGATCATTAACCTGAGTTATTCGGGGATCTAAATCGGGACTTCG
TACTTGATACTTAGTCGTGGGTTTAAGCTTCTTCCCTCACAGCACTTACG
AAGTATGTTAACAGAGGTTACATCTCTCCGGGGTGGAAAGAAAGAAAGGT
TTTAATACTATCGTCCGGTAAAAAAATCCAACGTGGTGCTACCTACTGTA
CCATGTATGAGCAAAACACGTACCGTCAGAGGGAACACGTGGTCATTATC
CAATACTATCTGTCGCGCTTTACACACACGACACTTTGTTTTCTTCCCGC
GCGCCGACGGCTTTGTTCTTCGACTATTGATCGTTTTTCACTATTTACAG
AGGATGACAGCACGGAGAGTCCCAGCGGCAGCTTATCTTCCCGGTTATCG
GGCTCCACGATGGGGTCGGAAGTCGTGCAGTACCGTTCTTTGAAGTCTCT
GGGAAACCTGCAGCTCGTGTGGAATCGAAAGGGTCGAGGCAGCGGCAGCC
TGAAAGTGGCAGAGGTTATCGATGCACTCGCCGGTCTGCAGTCTCAGGTG
TGTGTGTGTGTGGTGCGGCTATATATATGTATATATGTGTTGTGTTCGAC
GTCGCGACGTCATGCAGCAAAGACACACTTGTCTTTGCTGGAAGTGCAAT
GATGGACGGCTACATTGGTGTAGTGGTTACGACGTCATTGCCCTTCAAGT
CGTGTTGTGATCATGAGTTGAGCGCAGCGGCTTGTTGTTGCTTTCTATTA
ACAGTACAGTGAAATGTACCACTTCGTTGAATGCGATAGCTGAGGTATAT
ATGAAGTCAGTATATTGGGGTGGTACCTGACGTCACGCCTCCGACGGCTC
AAAACGTTGACCTAAACGAAACCTTTTGTGCACGCAAAGAGCCGCCAACC
GCGCCGATTTGAGCTCTATCAACGCACACTAGACACGGGGGGGGGGGGGG
GGGGGGGGGGGGGGTTAGGGTCAAGGAATAGCGGTAGTTCCGGCATTGGT
TCTATTCGCATCGCGCACAATAAAGGATGATCCATGAAACAACGAACTTT
CAGCCATGGCATTTGACAGAAGTGATGATACTGGCCTCCGCTAATAAGAA
ACTATTTGCGTCGGATGAAGCTTAGGCCTCGTTATTGACTGACCGCCCTG
ATGATGGAGTTTCAGAACAAGAATGGCATGCGGGAATGAACGTGAGGCGC
TCCAGTCGTTGTGAACAAAACCATGTCAACAACGTTTCTGTGTCATCTCT
CCCACCGTCATCATGACATTTTCATAATTCTTCCCTGCCTGTGGGGTGGA
AACTAGTTGGGGGAATTATCCCCCCGGTAAAAGGGTTAGAACATATTTAT
CTCGAGTTGTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACT
GTACTGTACTGTACTGTACTGTACTGTAACTCATCTGCCCGTCCACCAGT
CCATCGACTTCGGGCGGAAGTCGGCTGCATCGGCAATCTGATGATCACGA
CAAGCAACTATGACACCGTGTTACTCACCCATCCATTAGTTGTAGAGGGG
TACACTTCAGCTGCTAACTGTGGAATGTGCCTGCTGCCAGAGGTTTGCAG
TGTGATGTCTTCTTGTCTGTATGTGAACCGCTGTTGCCACGGCGAAGTTC
CATCGTCTGATCGTAGATCTGCATGATCACGCCAAAGTGCTGTATAATAT
AATCCAACCAAAAAATCGGCTGGTGTTCGTAATGAAAGGTATTGAGGCCC
GTCGGTGTGGAACTTCGGAAGAGAGCTGCCACGGATGCAGGCGGGAAGGA
AGAGGAGGAGAAGTACGCGTCGCTGCTCACCGGCCGGCGTTCGCTGGATC
TCAAATTTTCCACCCCGTTAGCAAGGTTCGGTCCTGTTTGGTTTTGGTTT
TGGTTTGGTTCCTCTTGAGGATGGGATATATTTGCTAGTAGCGTTTTTAT
CACTTTCGTCTAGTACGATGGCGTCGTGGTCCAGTTGAAGTCATTGCAAT
GGCACGCGCCGGAAGGGAAGGCCGCTAACGTGTGCCCAAAACATGATTTC
CTGGCTTTGCTTTGCTTTCTGTATCTCGCGTTGTTTCGCGTAGCGTCGTC
GTGGTCGTTGTCTTACACTCTTGGTTTGCGTTGCTCCTGTCTTGTCTCCT
CTCGTGTTGCATATCGTCTCATGTATTTTGTTGATTCAGAAATCGCTTTG
TCAGCGCTTTCAAGACCTTCGCCTGGGAGACCGACACCCCCAAGGCGGGT
ATACCCAATAAACCGCCTCAAGTGTTGAGGCACTATGCCCGATGAAGGAA
CGAGATCGCCGAGCTCTTGAACCGAATCACCACCTTGTAACGCCTGGAAA
AAATCAAGCACCGCTGGCCGCACTATGTTGACGAAAACGCGGGGGCAGGG
C back to topCoding sequence (CDS) from alignment at H-paniculata_contig4352:936..5036+ >mRNA_H-paniculata_contig4352.11075.1 ID=mRNA_H-paniculata_contig4352.11075.1|Name=mRNA_H-paniculata_contig4352.11075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig4352:936..5036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCACCGGCCCTGGTATCATGGCCACCAAGTACCCACGGCGCGGGAA
GCCACGGAATGTAATTTTGACGCTGATGATGCCTGAGGGTGATCCCCCAC
AAGAACAACAACCACAACAAACTAGCCGGGTCTCGGCGTTTAACGATGAT
CACCGGCCCTGGTATCATGGCCACCAAGTACCCACGGCGCGGGAAGCCAC
GGAATGTAATTTTGACGCTGATGATGCCTGAGGGTGATCCCCCACAAGAA
CAACAACCACAACAAACTAGCCGGGTCTCGGCGTTTAACGAGCTGGCAGG
GGTCGTGCTTTCCGAGAGCTGGCAGGGGTCGTGCTTTCCGAGGATGACAG
CACGGAGAGTCCCAGCGGCAGCTTATCTTCCCGGTTATCGGGCTCCACGA
TGGGGTCGGAAGTCGTGCAGTACCGTTCTTTGAAGTCTCTGGGAAACCTG
CAGCTCGTGTGGAATCGAAAGGGTCGAGGCAGCGGCAGCCTGAAAGTGGC
AGAGGTTATCGATGCACTCGCCGGTCTGCAGTCTCAGGATGACAGCACGG
AGAGTCCCAGCGGCAGCTTATCTTCCCGGTTATCGGGCTCCACGATGGGG
TCGGAAGTCGTGCAGTACCGTTCTTTGAAGTCTCTGGGAAACCTGCAGCT
CGTGTGGAATCGAAAGGGTCGAGGCAGCGGCAGCCTGAAAGTGGCAGAGG
TTATCGATGCACTCGCCGGTCTGCAGTCTCAGGTATTGAGGCCCGTCGGT
GTGGAACTTCGGAAGAGAGCTGCCACGGATGCAGGCGGGAAGGAAGAGGA
GGAGAAGTACGCGTCGCTGCTCACCGGCCGGCGTTCGCTGGATCTCAAAT
TTTCCACCCCGTTAGCAAGGTATTGAGGCCCGTCGGTGTGGAACTTCGGA
AGAGAGCTGCCACGGATGCAGGCGGGAAGGAAGAGGAGGAGAAGTACGCG
TCGCTGCTCACCGGCCGGCGTTCGCTGGATCTCAAATTTTCCACCCCGTT
AGCAAGAAATCGCTTTGTCAGCGCTTTCAAGACCTTCGCCTGGGAGACCG
ACACCCCCAAGGCGGGTATACCCAATAAACCGCCTCAAGTGTTGAGGCAC
TATGCCCGATGAAAATCGCTTTGTCAGCGCTTTCAAGACCTTCGCCTGGG
AGACCGACACCCCCAAGGCGGGTATACCCAATAAACCGCCTCAAGTGTTG
AGGCACTATGCCCGATGA back to top
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