mRNA_H-paniculata_contig4344.11067.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4344.11067.1
Unique NamemRNA_H-paniculata_contig4344.11067.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4344.11067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4344contigH-paniculata_contig4344:6929..8616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size669
Cds size669
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4344.11067.1prot_H-paniculata_contig4344.11067.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4344 6929..8616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930318.2318037-CDS-H-paniculata_contig4344:6928..69811622930318.2318037-CDS-H-paniculata_contig4344:6928..6981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4344 6929..6981 -
1691481239.4142613-CDS-H-paniculata_contig4344:6928..69811691481239.4142613-CDS-H-paniculata_contig4344:6928..6981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4344 6929..6981 -
1622930318.2522445-CDS-H-paniculata_contig4344:7467..75681622930318.2522445-CDS-H-paniculata_contig4344:7467..7568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4344 7468..7568 -
1691481239.4265165-CDS-H-paniculata_contig4344:7467..75681691481239.4265165-CDS-H-paniculata_contig4344:7467..7568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4344 7468..7568 -
1622930318.2661731-CDS-H-paniculata_contig4344:7839..81881622930318.2661731-CDS-H-paniculata_contig4344:7839..8188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4344 7840..8188 -
1691481239.4358132-CDS-H-paniculata_contig4344:7839..81881691481239.4358132-CDS-H-paniculata_contig4344:7839..8188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4344 7840..8188 -
1622930318.2813966-CDS-H-paniculata_contig4344:8450..86161622930318.2813966-CDS-H-paniculata_contig4344:8450..8616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4344 8451..8616 -
1691481239.4446309-CDS-H-paniculata_contig4344:8450..86161691481239.4446309-CDS-H-paniculata_contig4344:8450..8616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4344 8451..8616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4344.11067.1

>prot_H-paniculata_contig4344.11067.1 ID=prot_H-paniculata_contig4344.11067.1|Name=mRNA_H-paniculata_contig4344.11067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp
MHSYPTQDVNKTLVISGCRFSGNSVGVEDESSWGGAVLAAGGAINITSTV
FTNNSATFGGAVVLQLAISTIIDSEFTGNYADQFGGALLQLSVGSLLVSG
STFDSNVAGEAGGALAVATASDEDTYTLTNCIFFENSAGGEGGGAVILLV
DTKADSGVNVEDSEIGTMTLKNSLFESNSADRYGSNINIMCGNVVIDGAY
SIDTGDETDFTITPSFENCSSLV
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mRNA from alignment at H-paniculata_contig4344:6929..8616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4344.11067.1 ID=mRNA_H-paniculata_contig4344.11067.1|Name=mRNA_H-paniculata_contig4344.11067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1688bp|location=Sequence derived from alignment at H-paniculata_contig4344:6929..8616- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTCTTACCCAACTCAGGATGTCAACAAGACCCTGGTGATCTCGGG
ATGTCGTTTCAGCGGAAATTCTGTTGGTGTGGAGGACGAGAGCTCTTGGG
GTGGAGCCGTGTTAGCTGCCGGGGGTGCTATAAACATCACATCTACGGTT
TTCACAAACAATTCGGGTAAAGAAACGCACAAGAGTTATGCCGGATTGAA
TCAAGTGTTAGTTGGTCTTGATCGTGGCGATACACCATAGAAACCTTTAG
TCAGGTTCAGCACTTGAGCGTAGATCAGACTCCAGCCAACATCTTCGTAT
TCTACGAACGTGCATGGTGCATATACGTCGCAAATCGGTGTTCATACATC
TTATCATTTTTCTTCCGCCCCCCCCCCCCCCACCCCCCAATCGCGTGCAC
TTTGACGACCATATGTCGTGTACTCAAGCCACATTTGGGGGAGCTGTAGT
TCTGCAGTTGGCGATATCAACGATCATCGATAGCGAGTTTACAGGAAACT
ACGCGGACCAGTTCGGGGGAGCGCTACTCCAGCTTTCTGTTGGTTCGCTT
CTTGTCAGCGGAAGCACTTTTGACAGCAATGTGGCCGGGGAGGCTGGAGG
GGCTCTAGCAGTTGCCACCGCCTCAGACGAAGACACGTACACCCTGACCA
ATTGCATCTTTTTTGAGAATAGTGCGGGTGGCGAGGGGGGCGGTGCTGTG
ATACTCCTAGTAGATACGAAGGCGGACAGCGGGGTTAATGTTGAAGACTC
CGAGATTGGGACCATGACCCTCAAAAAGTGGGTTCTTCAAAGAGTAGGCG
TATTCAGTAGACAGTAGAGTGATCACGTCGTTAGCTGTGGGGTACTTAAC
ATAAGGTGAATGAGAAGCCAATAGTGAGAAGAGAAAATCATCGGTATGAC
GTAAGGACAATAGAAAGAGGAAGTTGTTGTAATAAAGTATTCATGAAGTC
TCCACAGCAGGAGTTTCCGTATACATGGTTTCATCCAAACAGCGAAGTCA
TCCCCCTTCCGCCTGTACCCGCTGCCCTCGTTTCTTCTGATGGTGCAGTT
CACTGTTCGAATCCAACAGCGCTGATCGTTACGGGTCTAACATCAACATA
ATGTGTGGAAATGTCGTGATTGATGGCGCATACAGCATTGATACGGGAGG
TAAGTCCCATATGGCGTAGGCAGCTTGACCATATAATGGTCATCGGGTTC
ATGAGCTCTGAGAAACCGTTATGTTGAAATTATTGATCGCCAACCGAGTT
AGAATCTATGTTTTATTTAACACATAGTGTCAGTGCAACATGACGCAAGG
CTTGGTGAATTCAACAGGTATGCGGTCACCTGGAAGCACCCTGGAGTCGC
TGTATAGTTCGGAGGTCGGCAAAGTGGGATAACTTGGCCCTTGCACCATC
CTGAAAATAGTGCAGTCACGTATAACATGGCTGTCAAGTCGCCTACGCCT
GCACGCCCACCTTGACTCCCGCTGGCGGTCTGCACTATGGTTTTGTTACC
ACTGATTGATGGTTCTCCGTCTTGGTGAGGAGTTTCCAGCCGGCCTACAG
CTCTTCTCTCTGTACGCCATATCCACACTGTCGATGTCTTTCCCCCCGTT
CGTTGATGTCTTTCTCCCCGTTCATTGACAATCAGATGAAACGGACTTCA
CAATCACTCCTTCTTTCGAAAATTGCTCCTCGCTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4344:6929..8616-

>mRNA_H-paniculata_contig4344.11067.1 ID=mRNA_H-paniculata_contig4344.11067.1|Name=mRNA_H-paniculata_contig4344.11067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig4344:6929..8616- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTCTTACCCAACTCAGGATGTCAACAAGACCCTGGTGATCTCGGG
ATGTCGTTTCAGCGGAAATTCTGTTGGTGTGGAGGACGAGAGCTCTTGGG
GTGGAGCCGTGTTAGCTGCCGGGGGTGCTATAAACATCACATCTACGGTT
TTCACAAACAATTCGGATGCACTCTTACCCAACTCAGGATGTCAACAAGA
CCCTGGTGATCTCGGGATGTCGTTTCAGCGGAAATTCTGTTGGTGTGGAG
GACGAGAGCTCTTGGGGTGGAGCCGTGTTAGCTGCCGGGGGTGCTATAAA
CATCACATCTACGGTTTTCACAAACAATTCGGCCACATTTGGGGGAGCTG
TAGTTCTGCAGTTGGCGATATCAACGATCATCGATAGCGAGTTTACAGGA
AACTACGCGGACCAGTTCGGGGGAGCGCTACTCCAGCTTTCTGTTGGTTC
GCTTCTTGTCAGCGGAAGCACTTTTGACAGCAATGTGGCCGGGGAGGCTG
GAGGGGCTCTAGCAGTTGCCACCGCCTCAGACGAAGACACGTACACCCTG
ACCAATTGCATCTTTTTTGAGAATAGTGCGGGTGGCGAGGGGGGCGGTGC
TGTGATACTCCTAGTAGATACGAAGGCGGACAGCGGGGTTAATGTTGAAG
ACTCCGAGATTGGGACCATGACCCTCAAAAACCACATTTGGGGGAGCTGT
AGTTCTGCAGTTGGCGATATCAACGATCATCGATAGCGAGTTTACAGGAA
ACTACGCGGACCAGTTCGGGGGAGCGCTACTCCAGCTTTCTGTTGGTTCG
CTTCTTGTCAGCGGAAGCACTTTTGACAGCAATGTGGCCGGGGAGGCTGG
AGGGGCTCTAGCAGTTGCCACCGCCTCAGACGAAGACACGTACACCCTGA
CCAATTGCATCTTTTTTGAGAATAGTGCGGGTGGCGAGGGGGGCGGTGCT
GTGATACTCCTAGTAGATACGAAGGCGGACAGCGGGGTTAATGTTGAAGA
CTCCGAGATTGGGACCATGACCCTCAAAAATTCACTGTTCGAATCCAACA
GCGCTGATCGTTACGGGTCTAACATCAACATAATGTGTGGAAATGTCGTG
ATTGATGGCGCATACAGCATTGATACGGGAGTTCACTGTTCGAATCCAAC
AGCGCTGATCGTTACGGGTCTAACATCAACATAATGTGTGGAAATGTCGT
GATTGATGGCGCATACAGCATTGATACGGGAGATGAAACGGACTTCACAA
TCACTCCTTCTTTCGAAAATTGCTCCTCGCTGGTGATGAAACGGACTTCA
CAATCACTCCTTCTTTCGAAAATTGCTCCTCGCTGGTG
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