mRNA_H-paniculata_contig43313.11045.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43313.11045.1
Unique NamemRNA_H-paniculata_contig43313.11045.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43313.11045.1 vs. uniprot
Match: D7FVY5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY5_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.030e-19
Identity = 45/49 (91.84%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    4 IAQNVKENAERNTFLTEERNTIQAHFQHLKGRMNKFRAAQAKRLGELTQ 150
            IAQNVKENAERN+FL EERN IQ HFQHLKGRMNKFRAAQAKRLGELTQ
Sbjct:  422 IAQNVKENAERNSFLMEERNAIQGHFQHLKGRMNKFRAAQAKRLGELTQ 470
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BLAST of mRNA_H-paniculata_contig43313.11045.1 vs. uniprot
Match: A0A7S2V114_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V114_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.580e-14
Identity = 39/49 (79.59%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    4 IAQNVKENAERNTFLTEERNTIQAHFQHLKGRMNKFRAAQAKRLGELTQ 150
            I QNVKENAERN  L EERN IQ HFQ LKGRMNKFR AQA+RLG LTQ
Sbjct:    9 ITQNVKENAERNKLLMEERNAIQTHFQALKGRMNKFREAQARRLGLLTQ 57
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BLAST of mRNA_H-paniculata_contig43313.11045.1 vs. uniprot
Match: A0A7S3XTC4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTC4_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 1.900e-13
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    4 IAQNVKENAERNTFLTEERNTIQAHFQHLKGRMNKFRAAQAKRLGELTQ 150
            +AQNV+ENAERN  L EERN IQAHFQ LKGRMN+FRA Q KRL  LT+
Sbjct:  104 VAQNVRENAERNRLLLEERNAIQAHFQALKGRMNRFRADQGKRLARLTK 152
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BLAST of mRNA_H-paniculata_contig43313.11045.1 vs. uniprot
Match: A0A6H5L8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8K9_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.460e-11
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:   52 EERNTIQAHFQHLKGRMNKFRAAQAKRLGELTQ 150
            EERN IQ HFQHLKGRMNKFRAAQAKRLGELTQ
Sbjct:    2 EERNAIQGHFQHLKGRMNKFRAAQAKRLGELTQ 34
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BLAST of mRNA_H-paniculata_contig43313.11045.1 vs. uniprot
Match: A0A7S4MHI3_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MHI3_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 1.110e-5
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 IAQNVKENAERNTFLTEERNTIQAHFQHLKGRMNKFRAAQAKRLGELT 147
            +A N ++  ERN  L EE++ I  HFQ LKGRMNKFR  + +RL ELT
Sbjct:  165 LASNGRKCEERNRALKEEKDAISKHFQELKGRMNKFREREGRRLQELT 212
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BLAST of mRNA_H-paniculata_contig43313.11045.1 vs. uniprot
Match: A0A1S3K2C1_LINUN (coiled-coil domain-containing protein 65 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K2C1_LINUN)

HSP 1 Score: 49.7 bits (117), Expect = 1.520e-5
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 IAQNVKENAERNTFLTEERNTIQAHFQHLKGRMNKFRAAQAKRLGELT 147
            +AQN KEN ERN  L EER  + AHF+ LK +MNK R  + +RL +LT
Sbjct:  279 MAQNAKENEERNRHLKEEREVMVAHFRELKSQMNKLRDLERERLTKLT 326
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BLAST of mRNA_H-paniculata_contig43313.11045.1 vs. uniprot
Match: R7UDN7_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UDN7_CAPTE)

HSP 1 Score: 48.1 bits (113), Expect = 5.340e-5
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 IAQNVKENAERNTFLTEERNTIQAHFQHLKGRMNKFRAAQAKRLGELT 147
            +  N KE  ERN  L EER ++ AHFQ LKG+MNK R A+ +RL +LT
Sbjct:  278 MGNNAKECEERNKQLREERESMIAHFQELKGQMNKLREAERERLTKLT 325
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43313.11045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FVY5_ECTSI3.030e-1991.84Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A7S2V114_9STRA1.580e-1479.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XTC4_HETAK1.900e-1373.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5L8K9_9PHAE4.460e-1193.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4MHI3_9EUKA1.110e-554.17Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A1S3K2C1_LINUN1.520e-554.17coiled-coil domain-containing protein 65 n=1 Tax=L... [more]
R7UDN7_CAPTE5.340e-554.17Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43313contigH-paniculata_contig43313:1398..1553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue7.2e-16
Seed eggNOG ortholog2880.D7FVY5
Preferred nameCCDC65
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001578,GO:0003352,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0032879,GO:0032886,GO:0034622,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0051270,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.regulation of cilium movement
EggNOG OGs2CMHW@1,2QQDD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930315.6602666-CDS-H-paniculata_contig43313:1397..15531622930315.6602666-CDS-H-paniculata_contig43313:1397..1553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43313 1398..1553 +
1691481238.3259673-CDS-H-paniculata_contig43313:1397..15531691481238.3259673-CDS-H-paniculata_contig43313:1397..1553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43313 1398..1553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43313.11045.1prot_H-paniculata_contig43313.11045.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43313 1398..1553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43313.11045.1

>prot_H-paniculata_contig43313.11045.1 ID=prot_H-paniculata_contig43313.11045.1|Name=mRNA_H-paniculata_contig43313.11045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
QIAQNVKENAERNTFLTEERNTIQAHFQHLKGRMNKFRAAQAKRLGELTQ
V*
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mRNA from alignment at H-paniculata_contig43313:1398..1553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43313.11045.1 ID=mRNA_H-paniculata_contig43313.11045.1|Name=mRNA_H-paniculata_contig43313.11045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig43313:1398..1553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATTGCGCAAAACGTGAAGGAAAACGCAGAGCGGAACACGTTTTTGAC
GGAGGAGCGGAATACCATCCAGGCGCACTTCCAGCACCTCAAAGGCAGAA
TGAACAAATTCCGCGCTGCACAGGCCAAGCGTTTGGGAGAGCTCACGCAG
GTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig43313:1398..1553+

>mRNA_H-paniculata_contig43313.11045.1 ID=mRNA_H-paniculata_contig43313.11045.1|Name=mRNA_H-paniculata_contig43313.11045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig43313:1398..1553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATTGCGCAAAACGTGAAGGAAAACGCAGAGCGGAACACGTTTTTGAC
GGAGGAGCGGAATACCATCCAGGCGCACTTCCAGCACCTCAAAGGCAGAA
TGAACAAATTCCGCGCTGCACAGGCCAAGCGTTTGGGAGAGCTCACGCAG
GTGTAACAGATTGCGCAAAACGTGAAGGAAAACGCAGAGCGGAACACGTT
TTTGACGGAGGAGCGGAATACCATCCAGGCGCACTTCCAGCACCTCAAAG
GCAGAATGAACAAATTCCGCGCTGCACAGGCCAAGCGTTTGGGAGAGCTC
ACGCAGGTGTAA
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