mRNA_H-paniculata_contig4318.11023.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4318.11023.1
Unique NamemRNA_H-paniculata_contig4318.11023.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4318.11023.1 vs. uniprot
Match: A0A6H5KD56_9PHAE (SufE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD56_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 5.810e-86
Identity = 167/335 (49.85%), Postives = 213/335 (63.58%), Query Frame = 3
Query:    3 MIRRVPLLAAALATSLCSAGEAFVTSGTLARALHTQHDATQQQRRHLPGGVFT--QAAVATRYQTYPAPRTALRRACFEQR--MSQSVEITDLCLTPQLERMTKAFKAAPNDKLRHVQLLEMAGMAPPIDPALKTEENEVPGCLSRVYVAAEAKRGLIFYTIDSDSMLTKGLAAVL-AEGLSGNSAEAIQAVKPYFVKMAGLSTSLTPGRTNGFLNMLKVMKLKAKSLA---------EEADRQAEAGDWIEEPSKTPMADQIKSKLEQLNPEYLTIADESDGEESKFMIMVVSKAFEGLNTLKRHRQVYGILDEEMKIVHAVTLQTKTPEEVGL 965
            M+ R  +L+ AL+TS+CS GE+FVT                     +PGG F+  +AA A R +   A      R+  +    MS S ++  L LTP+LER+TK F++ P DK+R +QLL +  M   +DPAL+TEEN+V GCLS VYVAAE K GLI+Y+ DSD+M+TKG A +L A GLSGNS EAIQ VKP F+++AGL  SL  GR NGF+NML+ MK KA +L          E+A   AE     E      MA ++  KL++L P  L I DES GEESKFMI +VSK+FEGL  LKRHR VYG++ +EMKIVHAVTL TKTPEE G+
Sbjct:    1 MVARAAILSVALSTSVCSVGESFVTPNVAV----------------VPGGAFSSHRAAQAARSRRPAAXXXXXXRSGRDDAPLMSTSTDLKQLGLTPELERLTKVFRSCPTDKMRQMQLLHLTQMGDKMDPALQTEENKVLGCLSTVYVAAEVKDGLIYYSTDSDAMITKGSARLLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLAAGRNNGFINMLRTMKGKALALGGESAIRAAMEQAAPAAETAAPEEAEESGTMASRVTEKLQKLEPLKLVIEDESGGEESKFMIKIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEAGM 319          
BLAST of mRNA_H-paniculata_contig4318.11023.1 vs. uniprot
Match: A0A836CLM4_9STRA (Cysteine desulfuration protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLM4_9STRA)

HSP 1 Score: 208 bits (529), Expect = 4.900e-59
Identity = 132/286 (46.15%), Postives = 174/286 (60.84%), Query Frame = 3
Query:  165 AAVA-TRYQTYPAPRTALRRACFEQRMSQSVEITDLCLTPQLERMTKAFKAAPNDKLRHVQLLEMAGMAPPIDPALKTEENEVPGCLSRVYVAAEAKRGLIFYTIDSDSMLTKGLAAVLAEGLSGNSAEAIQAVKPYFVKMAGLSTSLTPGRTNGFLNMLKVMKLKAKSLAEE------------------ADRQAEAGDWIEEPSKTPMADQIKSKLEQLNPEYLTIADESDGEESKFMIMVVSKAFEGLNTLKRHRQVYGILDEEMKIVHAVTLQTKTPEEVGL 965
            AAVA +R Q+Y A   + RR      MS +  I +L LT +LER+ KAF++ P+DK+R+ QLL MA     +    KT +N+V GCLS V+V A+ K+G +++  DSD+ LTKGL ++L  GLSGN+A  IQ+VKP F+++AGL TSLTPGR NGF+NML  MK KA                        AD + +     E P K PM   I  KL+ L P  L + DES+ +E KF I VVS AFEGL  +KRH+ V+  + +EMK VHAV L TKTP E+GL
Sbjct:   38 AAVAVSRTQSYTA---SARRRAAPLLMSTAPSIQELGLTRELERLVKAFRSMPDDKMRYKQLLFMAAQGAELPSEFKTTDNKVQGCLSTVHVVAKMKQGKVYFEGDSDAQLTKGLLSILIRGLSGNAAADIQSVKPEFIQVAGLQTSLTPGRNNGFINMLSTMKRKALQAEXXXXXXXXXXXXXXXXXXXXADSEGDDMGVAEVPGK-PMTTAIMRKLQALRPVRLQVEDESE-DEQKFYIAVVSSAFEGLPLVKRHQLVHLTIADEMKQVHAVQLSTKTPAEMGL 318          
BLAST of mRNA_H-paniculata_contig4318.11023.1 vs. uniprot
Match: A0A1Z5K9T0_FISSO (SufE domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9T0_FISSO)

HSP 1 Score: 180 bits (456), Expect = 5.360e-49
Identity = 118/255 (46.27%), Postives = 153/255 (60.00%), Query Frame = 3
Query:  273 LTPQLERMTKAFKAAPNDKLRHVQLLEMAGMAPPIDPALKTEENEVPGCLSRVYV---AAEAKRGLIF--YTIDSDSMLTKGLAAVLAEGLSGNSAEAIQAVKPYFVKMAGLSTSLTPGRTNGFLNMLKVMKLKAKSLAEEADRQAE---------AGDWIEEPSKTPMADQIKSKLEQLNPEYLTIADES-----------DGEESKFMIMVVSKAFEGLNTLKRHRQVYGILDEEMKIVHAVTLQTKTPEEVG 962
            LTP+L ++  AF++  +DKLR+ QLL MA    PIDP+    EN+VPGCLS VYV   A +   G+I   +  DSD +LTKGL A+L  GLSGN+AE IQ V P F++  G++ SLTPGR NGFLNML VMK+KAK L  EA+ QA          AGD      + PM   I   L+ L P  L + D S           DGE + F + +V+ AFEGLN +KRH+ VY +L + M  +HA+ +  KTPEEV 
Sbjct:   24 LTPELLKIANAFESIGDDKLRYKQLLYMATQLSPIDPSQAIPENKVPGCLSTVYVDGTAVDKGDGVIRIEFVGDSDGLLTKGLVALLVRGLSGNTAEDIQNVDPGFIQKTGIAASLTPGRNNGFLNMLNVMKIKAKQL--EANYQATGPSESATTTAGD------EKPMYQAIVQGLQALKPVSLKLEDVSYQHAGHREASKDGE-THFNLEIVASAFEGLNLVKRHKLVYMLLGDVMPRIHALQISAKTPEEVN 269          
BLAST of mRNA_H-paniculata_contig4318.11023.1 vs. uniprot
Match: A0A7S1UZE5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZE5_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.030e-48
Identity = 116/272 (42.65%), Postives = 150/272 (55.15%), Query Frame = 3
Query:  201 PRTALRRACFEQRMSQSVEITDLCLTPQLERMTKAFKAAPNDKLRHVQLLEMAGMAPPIDPALKTEENEVPGCLSRVYVAA------EAKRGLIFYTIDSDSMLTKGLAAVLAEGLSGNSAEAIQAVKPYFVKMAGLSTSLTPGRTNGFLNMLKVMKLKAKSLAEEADRQAEA-GDWIEEPSKTPMADQIKSKLEQLNPEYLTIADESDGE-----------ESKFMIMVVSKAFEGLNTLKRHRQVYGILDEEMKIVHAVTLQTKTPEEVG 962
            P  A +R       S  V    L LT +L  +T AFK   +  LR+ QLL MAG  PPI PA    EN+VPGCLS VYV        E K  +I +  +SD ++TKGL A+L  GLSG +AEAI  V P F+  AG++  LTPGR NGFLNML VMK KA  L   A   AEA G  ++     PM + + + L+ L P  L + D SD             ES F + VVS  FEGL  ++RH+ +Y +L + M  +HA+ ++ KTPEEV 
Sbjct:   22 PSPATQRPSLVVVRSTEVAADPLGLTTELRAITNAFKMVDDANLRNKQLLYMAGELPPISPAACVPENKVPGCLSTVYVDGTATYDEEKKANVINFVGESDGLMTKGLVALLIRGLSGETAEAINKVDPKFITEAGIAAGLTPGRNNGFLNMLAVMKKKALELDAAAKSGAEAPGGGVDLEGDRPMYNGMINALQILKPTKLILKDNSDQHAGHAGSKGYDGESHFELEVVSDTFEGLTLVQRHKVIYAVLGDIMDKIHALQIRAKTPEEVA 293          
BLAST of mRNA_H-paniculata_contig4318.11023.1 vs. uniprot
Match: A0A7S3Q629_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q629_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.050e-48
Identity = 111/267 (41.57%), Postives = 156/267 (58.43%), Query Frame = 3
Query:  240 MSQSVEITDLCLTPQLERMTKAFKAAPNDKLRHVQLLEMAGMAPPIDPALKTEENEVPGCLSRVYVAAEAKRG-----LIFYTIDSDSMLTKGLAAVLAEGLSGNSAEAIQAVKPYFVKMAGLSTSLTPGRTNGFLNMLKVMKLKAKSLA--------EEADRQAEAG-DWIEEPSKTPMADQIKSKLEQLNPEYLTIADES-------------DGEESKFMIMVVSKAFEGLNTLKRHRQVYGILDEEMKIVHAVTLQTKTPEEV 959
            M+ + EI  L LTP+LE+MTKAF + P++KLR+ QLL MA    P+DP L   EN+VPGCLS VYV   A+       ++ +  DSD  LTKGL A+L  G+SG +AE IQ V P F+  A ++ SLTPGR NGFLNML VMK KA S +        EEAD   E      +E +  PM + +   L +L P  L + D+S             +  ES F++ +V++ F+G+  +KRH+ +Y +L E M  +HA+++  K P +V
Sbjct:   50 MADTSEIEALGLTPELEKMTKAFGSIPDEKLRYKQLLYMANQLKPLDPKLMVSENKVPGCLSTVYVDCTARDNEEGETVLDFVGDSDGQLTKGLVALLVRGMSGCTAEQIQKVDPEFINAAKITQSLTPGRNNGFLNMLAVMKAKATSYSVGADNSGGEEADADTEGVISSFDEIAGKPMYNDMMESLLKLKPVTLELIDDSASHAGHAGSKGWEESGESHFVLNMVAEVFDGMPLVKRHQLIYLVLGETMDKIHALSINAKAPSQV 316          
BLAST of mRNA_H-paniculata_contig4318.11023.1 vs. uniprot
Match: M2XAG5_GALSU (Cysteine desulfuration protein SufE (Plastid) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XAG5_GALSU)

HSP 1 Score: 180 bits (456), Expect = 2.590e-48
Identity = 114/274 (41.61%), Postives = 159/274 (58.03%), Query Frame = 3
Query:  219 RACFEQRMSQSVEITDLCLTPQLERMTKAFKAAPNDKLRHVQLLEMAGMAPPIDPALKTEENEVPGCLSRVYVAAEAKRGLIFYTIDSDSMLTKGLAAVLAEGLSGNSAEAIQAVKPYFVKMAGLSTSLTPGRTNGFLNMLKVMKLKAKSLAEE-----------ADR--QAEAGDWIEEPSKTPMADQIKSKLEQLNPEYLTIADES------------DGEESKFMIMVVSKAFEGLNTLKRHRQVYGILDEEMKI-VHAVTLQTKTPEEVG 962
            ++ F  ++   V+   L LTP+L R+ K+F AAP+ KLR  QLL +A    P+    KT EN+VPGCLS V+V  +     IF+  DSD+ LTKGL A+L +GL+G + E I+ + P FV +AGLS SLTPGR NGFLNML+ MK KAK  A +           +DR  + +A     E +  P+   I  KL++L P  L + D+S               E+ F + VVS AF GL+ +KRH+ VY +L +E+K  +HA+ +Q KTP EV 
Sbjct:   52 KSTFRLQIRCQVDEKKLGLTPELARLVKSFAAAPDPKLRVQQLLYLAQTLEPLPFQYKTNENKVPGCLSTVHVVGDCDNEKIFFKGDSDAQLTKGLLALLIKGLNGCTVEEIERISPEFVTVAGLSVSLTPGRNNGFLNMLQTMKNKAKEAASKLNGVSREGRNYSDRVPKTQASPSTAETASGPIYSAIVEKLQKLKPSRLEVHDDSFQHAGHVGAKGLRSSETHFSVYVVSDAFVGLSLVKRHQLVYTLLGQELKEGLHALRIQAKTPSEVS 325          
BLAST of mRNA_H-paniculata_contig4318.11023.1 vs. uniprot
Match: A0A8J5XHT0_DIALT (SufE domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XHT0_DIALT)

HSP 1 Score: 174 bits (442), Expect = 1.080e-46
Identity = 112/253 (44.27%), Postives = 151/253 (59.68%), Query Frame = 3
Query:  267 LCLTPQLERMTKAFKAAPNDKLRHVQLLEMAGMAPPIDPALKTEENEVPGCLSRVYVAAEA-KRGLIFYTIDSDSMLTKGLAAVLAEGLSGNSAEAIQAVKPYFVKMAGLSTSLTPGRTNGFLNMLKVMKLKAKSLA--------EEADRQAEAGDWIEEPSKTPMADQIKSK-LEQLNPEYLTIADESD------------GEESKFMIMVVSKAFEGLNTLKRHRQVYGILDEEMK-IVHAVTLQTKTPEE 956
            L LTP+LE++ + FK  P+ KLR+ QLL +A  A P+D  LK  EN+VPGCLS V+V A A   G IFYT DSD+MLTKGL  +L +GLSG++A+ I AV P F++ AG++ SLTPGR NG LNML +MK KAK+LA          A+  A     + E    P+AD I  K L +L P  + + D S               E+ F + VVS  F GL+ ++RH+ +Y +L EEM   VHA+ +  +T  E
Sbjct:   40 LGLTPELEQVVEVFKMVPDQKLRYQQLLFLAQKAKPMDAVLKVPENKVPGCLSTVFVHATADSSGNIFYTGDSDAMLTKGLVVLLTDGLSGHTADEILAVDPKFIQEAGIAASLTPGRNNGLLNMLALMKQKAKALAGVAVPSGPSAANPSASPPAPVVEGGGAPVADSIIGKVLAKLKPTTVRLRDNSAQHAGHAGREGLAASETHFALEVVSDVFSGLSLVQRHQLIYALLAEEMAGSVHALQITARTTAE 292          
BLAST of mRNA_H-paniculata_contig4318.11023.1 vs. uniprot
Match: A0A7S2ZLB0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLB0_9RHOD)

HSP 1 Score: 174 bits (440), Expect = 1.930e-46
Identity = 113/257 (43.97%), Postives = 151/257 (58.75%), Query Frame = 3
Query:  252 VEITDLCLTPQLERMTKAFKAAPNDKLRHVQLLEMAGMAPPIDPALKTEENEVPGCLSRVYVAAEAKRGL--IFYTIDSDSMLTKGLAAVLAEGLSGNSAEAIQAVKPYFVKMAGLSTSLTPGRTNGFLNMLKVMKLKAKSLAEEA--------DRQAEAGDWIEEPSKTPMADQIKSKLEQLNPEYLTIADESD--------GEESKFMIMVVSKAFEGLNTLKRHRQVYGILDEEMKI----VHAVTLQTKTPEE 956
            VE++ L LTP LE+M  + K  P+ K+R+ QLL  A    P++P LKTE N+VPGCLS V+V AE       +++  DSD+ LTKGL ++L  GLSG++A  I+ V P F+K +GL+ SLTPGR NGF+NMLK+MK KA  L EEA         +  E     E P K P A  I   L QLNP  L + D S+        G+E+   I VVS+AFE +  + RH+ +Y +LD  M      VHA+ + TK P E
Sbjct:   35 VEMSSLNLTPALEKMVSSLKMFPDSKVRYQQLLHYASTLGPMEPELKTEMNKVPGCLSTVFVHAEMNPDTRKVYFKGDSDAQLTKGLVSMLVNGLSGSTALQIEKVNPDFIKASGLTVSLTPGRNNGFINMLKLMKRKAAVLDEEAAGLGPRSTGQTDEDAVEFEVPGK-PRATAIGRALMQLNPIELEVEDFSESHKGHAHAGDETHIRIKVVSEAFEDMPLVLRHKVIYTLLDSFMDKGSGGVHALQMDTKAPGE 290          
BLAST of mRNA_H-paniculata_contig4318.11023.1 vs. uniprot
Match: A0A4D9DCV6_9STRA (SufE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCV6_9STRA)

HSP 1 Score: 174 bits (440), Expect = 3.330e-46
Identity = 104/254 (40.94%), Postives = 157/254 (61.81%), Query Frame = 3
Query:  243 SQSVEITDLCLTPQLERMTKAFKAAPNDKLRHVQLLEMAGMAPPIDPALKTEENEVPGCLSRVYVAAEAKRGLIFYTIDSDSMLTKGLAAVLAEGLSGNSAEAIQAVKPYFVKMAGLSTSLTPGRTNGFLNMLKVMKLKA---KSLAEEADRQAEAGDWIEEPSKTPMADQIKSKLEQLNPEYLTIADESD-----------GEESKFMIMVVSKAFEGLNTLKRHRQVYGILDEEMKIVHAVTLQTKTPEEVG 962
            S  ++ + L LTP+L  +++AF+   +++ R   LL +A    P+    K  EN+VPGCLS VYV A  + G +++  DSD+ LTKGL A+L EG+SG SAE IQAVKP F+K AG++ SLTPGR NGFLNML ++K KA   +S  E A ++  A ++ E+ ++   +  +K  +  L P+ L + D+S            G ES F + +V+  FEGL+ ++RH+ VY +L  EM+ +HA+++  KTP E G
Sbjct:   58 STDIDESSLGLTPRLFEVSRAFQLM-DERTRVQNLLALASSMKPMKDFRKLPENKVPGCLSTVYVHAFMQDGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPAVEFQEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAEAG 310          
BLAST of mRNA_H-paniculata_contig4318.11023.1 vs. uniprot
Match: A0A7S0BG18_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BG18_9RHOD)

HSP 1 Score: 173 bits (438), Expect = 3.760e-46
Identity = 111/256 (43.36%), Postives = 151/256 (58.98%), Query Frame = 3
Query:  252 VEITDLCLTPQLERMTKAFKAAPNDKLRHVQLLEMAGMAPPIDPALKTEENEVPGCLSRVYVAAEAKRGL--IFYTIDSDSMLTKGLAAVLAEGLSGNSAEAIQAVKPYFVKMAGLSTSLTPGRTNGFLNMLKVMKLKAKSLAEEA------DRQAEAGDWIE-EPSKTPMADQIKSKLEQLNPEYLTIADESD--------GEESKFMIMVVSKAFEGLNTLKRHRQVYGILDEEMKI----VHAVTLQTKTPEE 956
            VE++ L LTP LE+M  + K  P+ K+R+ QLL  A    P++P LKTE N+VPGCLS V+V A        +++  DSD+ LTKGL ++L  GLSG++A  IQ V P F+K +GL+ SLTPGR NGF+NMLK+MK KA+ L EEA       +    GD +E E    P A  I   L QLNP  L + D S+        G+E+   I VVS AF+ ++ + RH+ +Y +LD  M      VHA+ +  K P E
Sbjct:   35 VEMSSLNLTPALEKMVSSLKIFPDSKVRYQQLLHYATTLGPMEPELKTEANKVPGCLSTVFVHAVINPDTRKVYFKGDSDAQLTKGLVSMLVNGLSGSTALQIQKVNPEFIKSSGLTVSLTPGRNNGFMNMLKLMKHKAELLDEEAAGLGPGSKGQTDGDAVEFEVPGKPRATAIGRALMQLNPTELEVEDFSESHKGHAHAGDETHIRIKVVSDAFQDMSLVLRHKVIYKLLDSFMDKGDGGVHALQIDAKAPAE 290          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4318.11023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD56_9PHAE5.810e-8649.85SufE domain-containing protein n=3 Tax=Ectocarpus ... [more]
A0A836CLM4_9STRA4.900e-5946.15Cysteine desulfuration protein n=1 Tax=Tribonema m... [more]
A0A1Z5K9T0_FISSO5.360e-4946.27SufE domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7S1UZE5_9STRA1.030e-4842.65Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3Q629_9STRA1.050e-4841.57Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
M2XAG5_GALSU2.590e-4841.61Cysteine desulfuration protein SufE (Plastid) n=1 ... [more]
A0A8J5XHT0_DIALT1.080e-4644.27SufE domain-containing protein n=1 Tax=Diacronema ... [more]
A0A7S2ZLB0_9RHOD1.930e-4643.97Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A4D9DCV6_9STRA3.330e-4640.94SufE domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S0BG18_9RHOD3.760e-4643.36Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4318contigH-paniculata_contig4318:11751..15371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.4
Seed ortholog evalue8.3e-78
Seed eggNOG ortholog2880.D7G7R0
Preferred namebola1
KEGG koko:K22066
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0271@1,KOG2313@2759
Ec32 ortholog descriptioncysteine desulfuration protein
Ec32 orthologEc-06_000700.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons4
Model size1666
Cds size966
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4318.11023.1prot_H-paniculata_contig4318.11023.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4318 12449..15369 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930311.819865-UTR-H-paniculata_contig4318:11750..124481622930311.819865-UTR-H-paniculata_contig4318:11750..12448Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4318 11751..12448 -
1691481236.6560192-UTR-H-paniculata_contig4318:11750..124481691481236.6560192-UTR-H-paniculata_contig4318:11750..12448Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4318 11751..12448 -
1622930311.9048054-UTR-H-paniculata_contig4318:15369..153711622930311.9048054-UTR-H-paniculata_contig4318:15369..15371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4318 15370..15371 -
1691481236.7085824-UTR-H-paniculata_contig4318:15369..153711691481236.7085824-UTR-H-paniculata_contig4318:15369..15371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4318 15370..15371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930311.8392816-CDS-H-paniculata_contig4318:12448..126591622930311.8392816-CDS-H-paniculata_contig4318:12448..12659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4318 12449..12659 -
1691481236.668331-CDS-H-paniculata_contig4318:12448..126591691481236.668331-CDS-H-paniculata_contig4318:12448..12659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4318 12449..12659 -
1622930311.8596764-CDS-H-paniculata_contig4318:13462..136061622930311.8596764-CDS-H-paniculata_contig4318:13462..13606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4318 13463..13606 -
1691481236.6778557-CDS-H-paniculata_contig4318:13462..136061691481236.6778557-CDS-H-paniculata_contig4318:13462..13606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4318 13463..13606 -
1622930311.8729296-CDS-H-paniculata_contig4318:14060..142581622930311.8729296-CDS-H-paniculata_contig4318:14060..14258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4318 14061..14258 -
1691481236.6875203-CDS-H-paniculata_contig4318:14060..142581691481236.6875203-CDS-H-paniculata_contig4318:14060..14258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4318 14061..14258 -
1622930311.8849978-CDS-H-paniculata_contig4318:14956..153691622930311.8849978-CDS-H-paniculata_contig4318:14956..15369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4318 14957..15369 -
1691481236.6988332-CDS-H-paniculata_contig4318:14956..153691691481236.6988332-CDS-H-paniculata_contig4318:14956..15369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4318 14957..15369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4318.11023.1

>prot_H-paniculata_contig4318.11023.1 ID=prot_H-paniculata_contig4318.11023.1|Name=mRNA_H-paniculata_contig4318.11023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=322bp
MIRRVPLLAAALATSLCSAGEAFVTSGTLARALHTQHDATQQQRRHLPGG
VFTQAAVATRYQTYPAPRTALRRACFEQRMSQSVEITDLCLTPQLERMTK
AFKAAPNDKLRHVQLLEMAGMAPPIDPALKTEENEVPGCLSRVYVAAEAK
RGLIFYTIDSDSMLTKGLAAVLAEGLSGNSAEAIQAVKPYFVKMAGLSTS
LTPGRTNGFLNMLKVMKLKAKSLAEEADRQAEAGDWIEEPSKTPMADQIK
SKLEQLNPEYLTIADESDGEESKFMIMVVSKAFEGLNTLKRHRQVYGILD
EEMKIVHAVTLQTKTPEEVGL*
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mRNA from alignment at H-paniculata_contig4318:11751..15371-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4318.11023.1 ID=mRNA_H-paniculata_contig4318.11023.1|Name=mRNA_H-paniculata_contig4318.11023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3621bp|location=Sequence derived from alignment at H-paniculata_contig4318:11751..15371- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGATCAGGAGAGTACCACTTTTAGCAGCAGCGCTCGCGACCAGCTTG TGCTCTGCCGGCGAAGCGTTTGTAACATCAGGCACACTCGCGCGCGCATT ACATACACAACATGATGCCACGCAGCAGCAACGACGACACCTACCTGGCG GCGTATTTACACAAGCCGCTGTGGCTACTCGTTACCAAACTTACCCTGCC CCTCGCACCGCGCTGAGGCGAGCGTGCTTCGAGCAGCGCATGTCTCAGTC GGTTGAGATCACGGACCTTTGCCTGACGCCGCAGCTCGAAAGAATGACGA AAGCGTTCAAGGCGGCTCCCAACGACAAACTGCGACACGTGCAGCTATTG GAGATGGCTGGAATGGCACCCCCAATAGACCCTGCTCTCAAAACAGAGGA GAACGAGGTGCCGGGGTAAGTCCAAGGCATGGACTTGGTGATTACTGCGT GAGATGGTTCGGAATGTAGGTGTGCTACTGCGAGATTCGCGTTGTCAAGT TGACGGCTGTTATGCCTAAACCTAACCTAACGTGAAACTGTACGGTACCC CTGTATCGCAGTCAATTGCTAAAAGTGTTGTGCACATAAAAAATTACCGA ATGTCATGTGTTCGGATTTCTGTTCGGACATCTTACGCGGTTGGCGTTAG TTTCAGTAGACATGTACTTAGGTTTCCAGGAGGCTATATCGAGGGTTGTC GCAACTGGATGATCGTGCTTTAACTCACTGTGCCTTAACCCATCGTGCCT TGACCAACACCGTCATACATTGATATTCCCCCATTTGTGTGCCAACACAT GTACTGTAGTACCGACAGCTGTGTCGTGTAGCACCGACAACTGTCGATGT CAGTGTGCAGGGAAGGCATTTTCCCTTTGACTAAAAGAACCACATGTATG TTTGTACTGCCATGTTGCGTGAAAGCCTGCCATGATTCTCCCGAATAGCA CGCAAACGTCAGTCGTTGCAAGTGGTCGACTGTCCTTGTTTCGCCATCAT GAGCGAAACCACAATACAGGGCAGGAAAATCCTCGAATGCTTGCGCATCG ACGCAGGGTAACATTTTTTTTCTAAAACCCGCACGTCATGTTACTCTCCC TTGATGTGTTCAGGTGTCTGTCGCGAGTTTACGTTGCGGCAGAGGCGAAA AGGGGCCTTATCTTCTACACAATAGATTCGGACTCGATGCTTACTAAGGG CCTCGCGGCAGTTCTTGCTGAGGGACTCTCAGGGAACTCGGCGGAGGCCA TCCAGGCCGTGAAGCCATACTTCGTGAAGATGGCAGGTCTATCCACCAGC CTTACACCGGGGTCCGTAAAAGTACCAGCACAATTTCGTACATACCATAG GCCGTAGTGGTATGCTCTGTGAATTACGCTGCGCTCTCCACCATTGAAGT GGCATCGCAGAAATTGGAGCACGGAATCGGTAATGGAAACAAAGGAATAT AACGTCAATCATCATTGAAAGGGGATTTGTATGCCATTTGTTGCAGCATT TACCTCGACCAGCCACAAGACGTCGTTGTCTTGTATGGCATTCAACGTTT TAAGGAGCCAGTCTTTTCGCTAGGATTTGACCAACCCTCGCACTAGCAAG ACTGTTTGTGTCGACGAGGATTTCGAAGTTGCACATATTTTTCCTCTTCC GCTATAGTATGCGTCCGGTTTTTGCCAAGGGTTTCTTTTATTCTAGATTA GATCGACATTCCGCCCTTACGCGCCATTTTGCGTCCTTCCTTTCGGGTGC CCGTCGTACTACTAGACGGACCAACGGCTTCCTGAACATGCTGAAGGTCA TGAAACTCAAGGCCAAAAGCTTGGCGGAGGAAGCGGACCGACAAGCTGAG GCTGGGGATTGGATCGAGGAGCCGTCAAAAACGCCCATGGCGGATCAGAT CAAGAGCAAGTGAGTTCGGCGCAATTGTAGAGTCGCGGCGGTATTTCCCT CTCGCATTTCGTTCCCGATCTTGTTGCAAGGCTATCACAGTAATTGCCAG TCTTTGTAGTTCTCTTCCGAAAAGGACGCACATGCTTATTTAGGGATATG TATGTTTCTCGCTTCAGCTCATTTTCTCGTATGTTATCGTTGTGGCTCAT CGGTTGATGGCTTGATGTCCTGTTTTAGTCCAAACGTGGACATTGTCGTT AGCCATAGTGAAAAAAGAGCACATAACCCTTGAAGAAATGGCTCAAGTCA CGAAAAACATAATGTATTTGTGGTGTGTACAACGAAGGCAGACTGAGCTC TACACGTGTTTCCTGTGACACGCCACGCCACGCATCATCGTGCCTCCGTC ATAACCGTCAATTGTTAAAAAATTGGCACATGTGTTTTCTACCATCTGTC AAAATATAGACACGGATGCCATACCATGGTTGCAACAAGTGATGTTACTG TGTTCTACTGTTTGACCCCTTCATAAACCCGGTTCTAGATTTGTTGACAC TCCGCGGAGCAGCGGAGCGTTTGGGCGGTTGTAAACGCCAACTGGTTTAG TTTACCCTTTCCGGGCGTTTAAGCATGGACTACGGCTAGGGCTAGGGTTA GTTTGGGGGCTTGCAACTTTGCTCGTCTTCGATTACGACAACAACTCAAT TCAAGTCAACCGCTGATGTTTTCGGCAGGCGATGGAAGACAAACCTCAAA CTTGGTGTTCTGACTGCACAGCGTGCGCGTATGTCTGTCTTGATGGATGC CCTGTTTGTCAGGTTGGAACAGCTTAACCCTGAATATCTCACCATAGCCG ACGAGTCTGATGGTGAGGAATCGAAGTTTATGATAATGGTGGTGAGCAAG GCCTTTGAGGGCTTGAATACCCTGAAGCGGCATAGGCAAGTCTACGGCAT CCTAGACGAGGAGATGAAGATTGTGCACGCAGTGACCCTTCAAACCAAGA CACCCGAAGAGGTCGGGTTATAGTTTGATTCCATCTGTATTTTACGGGAG GTTTGTTCACGGCATCCAGTGAGGTCATGCAAGAGCGGGGATATGCCGTC CGTCGTTAGAGATGGATGCCGAAGGTTGTATTTCTCTGGCGGCGACTACC CAGAAGTATGCCAGGCGCTTGTTTGATTTGATGCTCGACGCGGGTTTACG AGACCCGAGCACGACTGTCTAGGTGCGTCCTTTGGATATTTTGATATCCA AATCTGACTGTTGCATCGGCTGTGCAGTATCTTAGAGCAGGGCGTGAGGG GTATCAAGGCCGTTTCCAACGAAAAATGTCCTCGCCTAGCTGGTCGCTGG TTGATAAGTTTATACTGTTACATGGTGTTGGAGGGCTATGAGTGTAGATG GTTATAGACAGAGAAGCCAACCCCGCTGTGGCGTTTTTTTTGCGTATGTA TTTGTGTCTGTTGGTAGCGGGGGAATAGTATGCAGGACTTCAATTTTGCA TCCATTTTTTTTTACGCTTGCCATCATCTCGTGGTCTCATGGCCAGGAAC TTCGCGTGTGGTGCGTGCTGAGCGACCGACCGCCCCAATGAGTGTGAAGT ATGCTTGCTTCCTTTTTGTGTGCTGAAATTTCTTCACGTAGGTATATACT CGTAACCTCTTGTATTTCAACAGACCAGACGGTTCATACATCACATTTAT CTTGGCCTTATTTCACTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4318:11751..15371-

>mRNA_H-paniculata_contig4318.11023.1 ID=mRNA_H-paniculata_contig4318.11023.1|Name=mRNA_H-paniculata_contig4318.11023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1932bp|location=Sequence derived from alignment at H-paniculata_contig4318:11751..15371- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCAGGAGAGTACCACTTTTAGCAGCAGCGCTCGCGACCAGCTTGTG
CTCTGCCGGCGAAGCGTTTGTAACATCAGGCACACTCGCGCGCGCATTAC
ATACACAACATGATGCCACGCAGCAGCAACGACGACACCTACCTGGCGGC
GTATTTACACAAGCCGCTGTGGCTACTCGTTACCAAACTTACCCTGCCCC
TCGCACCGCGCTGAGGCGAGCGTGCTTCGAGCAGCGCATGTCTCAGTCGG
TTGAGATCACGGACCTTTGCCTGACGCCGCAGCTCGAAAGAATGACGAAA
GCGTTCAAGGCGGCTCCCAACGACAAACTGCGACACGTGCAGCTATTGGA
GATGGCTGGAATGGCACCCCCAATAGACCCTGCTCTCAAAACAGAGGAGA
ACGAGGTGCCGGGATGATCAGGAGAGTACCACTTTTAGCAGCAGCGCTCG
CGACCAGCTTGTGCTCTGCCGGCGAAGCGTTTGTAACATCAGGCACACTC
GCGCGCGCATTACATACACAACATGATGCCACGCAGCAGCAACGACGACA
CCTACCTGGCGGCGTATTTACACAAGCCGCTGTGGCTACTCGTTACCAAA
CTTACCCTGCCCCTCGCACCGCGCTGAGGCGAGCGTGCTTCGAGCAGCGC
ATGTCTCAGTCGGTTGAGATCACGGACCTTTGCCTGACGCCGCAGCTCGA
AAGAATGACGAAAGCGTTCAAGGCGGCTCCCAACGACAAACTGCGACACG
TGCAGCTATTGGAGATGGCTGGAATGGCACCCCCAATAGACCCTGCTCTC
AAAACAGAGGAGAACGAGGTGCCGGGGTGTCTGTCGCGAGTTTACGTTGC
GGCAGAGGCGAAAAGGGGCCTTATCTTCTACACAATAGATTCGGACTCGA
TGCTTACTAAGGGCCTCGCGGCAGTTCTTGCTGAGGGACTCTCAGGGAAC
TCGGCGGAGGCCATCCAGGCCGTGAAGCCATACTTCGTGAAGATGGCAGG
TCTATCCACCAGCCTTACACCGGGGTGTCTGTCGCGAGTTTACGTTGCGG
CAGAGGCGAAAAGGGGCCTTATCTTCTACACAATAGATTCGGACTCGATG
CTTACTAAGGGCCTCGCGGCAGTTCTTGCTGAGGGACTCTCAGGGAACTC
GGCGGAGGCCATCCAGGCCGTGAAGCCATACTTCGTGAAGATGGCAGGTC
TATCCACCAGCCTTACACCGGGACGGACCAACGGCTTCCTGAACATGCTG
AAGGTCATGAAACTCAAGGCCAAAAGCTTGGCGGAGGAAGCGGACCGACA
AGCTGAGGCTGGGGATTGGATCGAGGAGCCGTCAAAAACGCCCATGGCGG
ATCAGATCAAGAGCAAACGGACCAACGGCTTCCTGAACATGCTGAAGGTC
ATGAAACTCAAGGCCAAAAGCTTGGCGGAGGAAGCGGACCGACAAGCTGA
GGCTGGGGATTGGATCGAGGAGCCGTCAAAAACGCCCATGGCGGATCAGA
TCAAGAGCAAGTTGGAACAGCTTAACCCTGAATATCTCACCATAGCCGAC
GAGTCTGATGGTGAGGAATCGAAGTTTATGATAATGGTGGTGAGCAAGGC
CTTTGAGGGCTTGAATACCCTGAAGCGGCATAGGCAAGTCTACGGCATCC
TAGACGAGGAGATGAAGATTGTGCACGCAGTGACCCTTCAAACCAAGACA
CCCGAAGAGGTCGGGTTATAGGTTGGAACAGCTTAACCCTGAATATCTCA
CCATAGCCGACGAGTCTGATGGTGAGGAATCGAAGTTTATGATAATGGTG
GTGAGCAAGGCCTTTGAGGGCTTGAATACCCTGAAGCGGCATAGGCAAGT
CTACGGCATCCTAGACGAGGAGATGAAGATTGTGCACGCAGTGACCCTTC
AAACCAAGACACCCGAAGAGGTCGGGTTATAG
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