mRNA_H-paniculata_contig4317.11020.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4317.11020.1
Unique NamemRNA_H-paniculata_contig4317.11020.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4317.11020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4317contigH-paniculata_contig4317:10321..11564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4317.11020.1prot_H-paniculata_contig4317.11020.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4317 10364..11564 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930311.3181684-UTR-H-paniculata_contig4317:10320..103631622930311.3181684-UTR-H-paniculata_contig4317:10320..10363Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4317 10321..10363 +
1691481236.4457288-UTR-H-paniculata_contig4317:10320..103631691481236.4457288-UTR-H-paniculata_contig4317:10320..10363Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4317 10321..10363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930311.336357-CDS-H-paniculata_contig4317:10363..104481622930311.336357-CDS-H-paniculata_contig4317:10363..10448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4317 10364..10448 +
1691481236.4560132-CDS-H-paniculata_contig4317:10363..104481691481236.4560132-CDS-H-paniculata_contig4317:10363..10448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4317 10364..10448 +
1622930311.3566055-CDS-H-paniculata_contig4317:11424..115641622930311.3566055-CDS-H-paniculata_contig4317:11424..11564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4317 11425..11564 +
1691481236.4652486-CDS-H-paniculata_contig4317:11424..115641691481236.4652486-CDS-H-paniculata_contig4317:11424..11564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4317 11425..11564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4317.11020.1

>prot_H-paniculata_contig4317.11020.1 ID=prot_H-paniculata_contig4317.11020.1|Name=mRNA_H-paniculata_contig4317.11020.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MTSGLGRSSVVIIGRRSKPCLVTSMHSVGPERGIGFETAPETHHPLVRLQ
VFLLRFPFPACCPGKADGTEVFPND
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mRNA from alignment at H-paniculata_contig4317:10321..11564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4317.11020.1 ID=mRNA_H-paniculata_contig4317.11020.1|Name=mRNA_H-paniculata_contig4317.11020.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1244bp|location=Sequence derived from alignment at H-paniculata_contig4317:10321..11564+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCCCCTCTTGAGACAAGTGAGGCGACTGCGAGACGAGGCACATGACCT
CGGGCTTGGGGCGATCGAGCGTGGTGATAATTGGCCGCCGTTCCAAACCC
TGTTTGGTGACGTCCATGCATTCAGTAGGTACGTCGGAAGTGCGGATCGT
GTGAGCTGTCTCGCTCAGCAGTTGGCGTGTCTTGCTGGTGCCTCGAATAT
TTTACGGGTCGGTTCTGAGCAACCTCTGGAAGTCTGCAGGATGGATACGA
GAGGGATGGTGCTTCAAGAAGAGTCCGTTTGGTAGGAGGTGGTGGAGTCG
TTTGTTGGGCGATTCAGATCGCATTTCATGGAGGCTTATCCAGATGTCGT
GACTGGGGTATGTGATGTTGTTGAGACGTGTCGTACTGGCCTTCGTCTTC
TGATTGCTGCTGCTGCTCCTCCTCCTCCTTGACCTGGATTAGCGGAAGAG
TATAGTAAGTCTAGTGTGTGCGGATGATGCATGTTCTTAACGTCATCACC
CCCTTTAGCGTTTGGAGGCAAAACTCAAATACGCGAGATCTCTAAGCAGC
ACCCGTCATCCCTATCGTTGCATCCTTTGCTGGAATGACTTCTTGTTGGC
TCGACCGGTGCATAAACCCCGATTTATTTCTACGACGATTGGGGTTGATG
AATTGGTCGGCTGTGTGTGAAGTGAAATTATTCTTTTTGTTCACCAGGTG
CAGCTTGTATGCTCCGTAGTTAGCCTGAAGACTAGCCGCTTTTGCTCAGA
TCGCGTTTTTGTGTATTTATAATGATTTATAACGGTTTGGGGCGTCATAA
AAACTCCCCGGCAAGGAGGGATCTAACTCCTACAAACGTACCGTGTTCGT
TGACTGAAAGAAAATCCCGGATGTCTCGGGAACAACGTGTTCGCGGTGGA
AACATGTCTGATCTATTTCGTCTACACCTGGGTTAGACTCGGTTTGAGGT
GGTCGTGTTCCAGGAGCTGGCTGACTATGCCGTGAAAGTTTGAACGGCCG
GAGGGGGTCTCAGTAACCACAACCGGAACGCGACACGGCGCATTGACCTG
TGTAACCGCCCCAAAACTTGGATACCCCGAACGGTTGATACCCTTCGACT
TTAGGTCCGGAACGTGGAATTGGATTCGAGACAGCACCCGAAACTCATCA
TCCGTTGGTTCGTCTTCAGGTCTTCCTACTGAGGTTTCCGTTCCCTGCGT
GTTGCCCTGGGAAGGCTGATGGAACCGAGGTTTTCCCCAACGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4317:10321..11564+

>mRNA_H-paniculata_contig4317.11020.1 ID=mRNA_H-paniculata_contig4317.11020.1|Name=mRNA_H-paniculata_contig4317.11020.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig4317:10321..11564+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCTCGGGCTTGGGGCGATCGAGCGTGGTGATAATTGGCCGCCGTTC
CAAACCCTGTTTGGTGACGTCCATGCATTCAGTAGATGACCTCGGGCTTG
GGGCGATCGAGCGTGGTGATAATTGGCCGCCGTTCCAAACCCTGTTTGGT
GACGTCCATGCATTCAGTAGGTCCGGAACGTGGAATTGGATTCGAGACAG
CACCCGAAACTCATCATCCGTTGGTTCGTCTTCAGGTCTTCCTACTGAGG
TTTCCGTTCCCTGCGTGTTGCCCTGGGAAGGCTGATGGAACCGAGGTTTT
CCCCAACGATGTCCGGAACGTGGAATTGGATTCGAGACAGCACCCGAAAC
TCATCATCCGTTGGTTCGTCTTCAGGTCTTCCTACTGAGGTTTCCGTTCC
CTGCGTGTTGCCCTGGGAAGGCTGATGGAACCGAGGTTTTCCCCAACGAT
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