mRNA_H-paniculata_contig4317.11019.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4317.11019.1
Unique NamemRNA_H-paniculata_contig4317.11019.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4317.11019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4317contigH-paniculata_contig4317:9420..10380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog2880.D7FL28
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons2
Model size429
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4317.11019.1prot_H-paniculata_contig4317.11019.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4317 9538..10333 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930311.4111788-UTR-H-paniculata_contig4317:9419..95371622930311.4111788-UTR-H-paniculata_contig4317:9419..9537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4317 9420..9537 +
1691481236.477246-UTR-H-paniculata_contig4317:9419..95371691481236.477246-UTR-H-paniculata_contig4317:9419..9537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4317 9420..9537 +
1622930311.4648318-UTR-H-paniculata_contig4317:10333..103801622930311.4648318-UTR-H-paniculata_contig4317:10333..10380Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4317 10334..10380 +
1691481236.5145571-UTR-H-paniculata_contig4317:10333..103801691481236.5145571-UTR-H-paniculata_contig4317:10333..10380Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4317 10334..10380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930311.4324691-CDS-H-paniculata_contig4317:9537..97891622930311.4324691-CDS-H-paniculata_contig4317:9537..9789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4317 9538..9789 +
1691481236.4949648-CDS-H-paniculata_contig4317:9537..97891691481236.4949648-CDS-H-paniculata_contig4317:9537..9789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4317 9538..9789 +
1622930311.4474099-CDS-H-paniculata_contig4317:10321..103331622930311.4474099-CDS-H-paniculata_contig4317:10321..10333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4317 10322..10333 +
1691481236.5059953-CDS-H-paniculata_contig4317:10321..103331691481236.5059953-CDS-H-paniculata_contig4317:10321..10333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4317 10322..10333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4317.11019.1

>prot_H-paniculata_contig4317.11019.1 ID=prot_H-paniculata_contig4317.11019.1|Name=mRNA_H-paniculata_contig4317.11019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MCSASKMEVVTRVRELGLGKALTALGMVPMGCLRWLMPSCPVAHGLETMV
KKGFLEERLSGVGAEISVRRWWSRMEEGGEPSPERPS*
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mRNA from alignment at H-paniculata_contig4317:9420..10380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4317.11019.1 ID=mRNA_H-paniculata_contig4317.11019.1|Name=mRNA_H-paniculata_contig4317.11019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=961bp|location=Sequence derived from alignment at H-paniculata_contig4317:9420..10380+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTGCTGGGCGTGAAAACTGGCAATCCCTCGAGGTGGCATTGCGAGGGG
CGAGCTCGTGTCGTGGCCAGAGGATGTAGATCGTGGGTGAGTCGATAGTA
TTACCTTCGGCCCACGCCATGTGTAGCGCATCCAAGATGGAAGTCGTGAC
CAGGGTTCGCGAGCTTGGTTTGGGAAAGGCACTTACTGCTCTTGGCATGG
TGCCGATGGGGTGTCTGAGGTGGTTGATGCCGTCGTGCCCAGTAGCCCAC
GGGTTGGAAACAATGGTGAAGAAAGGGTTCTTGGAAGAAAGGTTGAGCGG
AGTGGGGGCCGAGATCAGTGTGAGGCGGTGGTGGTCAAGGATGGAAGAAG
GCGGAGAACCGTCGCCAGAGGTGAGAATTATAGTTGGCTAGTGGCTCATA
TTCCAACAGGCAATGTGGTCGACGAAGTCATCGCCATTGAGGAAATATTC
ACACCATGGTTGTATGTCGGTTCATCCCACGATCAGCACATTTTGAGGGT
CATGCAACCTGAAAAGACATTTCGAGGGTGGGTCTTGAGTAGGCAAACAC
GTCACCACGTTGGAGTCCTTCGGATATTGGCCCTGGGTCACTATATTCGT
TGGAAATCTGTCTCCTTGGTTGGTTCGCAGTTTTGCAAAATTACCCTTGG
ATAAAGTCGTATTCACGATTTGTTCGCGGGAATAACCAACCGTGTGTGCC
TAGGCATTGCGTTGTGATTTTTCACGTAACGTGAATCGTGGGCCTTCGTT
GGAACATTTGGAGCTCATCATATTAAGAAGTTTTGCGCTTTAGGGTCGGT
TTTACATGCGCACGCAACTGCTACTAGATAACTATCCCAACGGTATGCCA
ACGGCCGAAATGACCCCTACGTTTTTCCTTTCCAATCACATGGATCAGAT
AGCGCCCCTCTTGAGACAAGTGAGGCGACTGCGAGACGAGGCACATGACC
TCGGGCTTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4317:9420..10380+

>mRNA_H-paniculata_contig4317.11019.1 ID=mRNA_H-paniculata_contig4317.11019.1|Name=mRNA_H-paniculata_contig4317.11019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig4317:9420..10380+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTAGCGCATCCAAGATGGAAGTCGTGACCAGGGTTCGCGAGCTTGG
TTTGGGAAAGGCACTTACTGCTCTTGGCATGGTGCCGATGGGGTGTCTGA
GGTGGTTGATGCCGTCGTGCCCAGTAGCCCACGGGTTGGAAACAATGGTG
AAGAAAGGGTTCTTGGAAGAAAGGTTGAGCGGAGTGGGGGCCGAGATCAG
TGTGAGGCGGTGGTGGTCAAGGATGGAAGAAGGCGGAGAACCGTCGCCAG
AGATGTGTAGCGCATCCAAGATGGAAGTCGTGACCAGGGTTCGCGAGCTT
GGTTTGGGAAAGGCACTTACTGCTCTTGGCATGGTGCCGATGGGGTGTCT
GAGGTGGTTGATGCCGTCGTGCCCAGTAGCCCACGGGTTGGAAACAATGG
TGAAGAAAGGGTTCTTGGAAGAAAGGTTGAGCGGAGTGGGGGCCGAGATC
AGTGTGAGGCGGTGGTGGTCAAGGATGGAAGAAGGCGGAGAACCGTCGCC
AGAGCGCCCCTCTTGACGCCCCTCTTGA
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