mRNA_H-paniculata_contig43145.11014.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43145.11014.1
Unique NamemRNA_H-paniculata_contig43145.11014.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43145.11014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43145contigH-paniculata_contig43145:104..702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43145.11014.1prot_H-paniculata_contig43145.11014.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43145 112..480 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930310.860908-UTR-H-paniculata_contig43145:103..1111622930310.860908-UTR-H-paniculata_contig43145:103..111Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43145 104..111 +
1691481236.3043284-UTR-H-paniculata_contig43145:103..1111691481236.3043284-UTR-H-paniculata_contig43145:103..111Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43145 104..111 +
1622930310.8955564-UTR-H-paniculata_contig43145:480..7021622930310.8955564-UTR-H-paniculata_contig43145:480..702Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43145 481..702 +
1691481236.3248932-UTR-H-paniculata_contig43145:480..7021691481236.3248932-UTR-H-paniculata_contig43145:480..702Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43145 481..702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930310.8776064-CDS-H-paniculata_contig43145:111..4801622930310.8776064-CDS-H-paniculata_contig43145:111..480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43145 112..480 +
1691481236.315241-CDS-H-paniculata_contig43145:111..4801691481236.315241-CDS-H-paniculata_contig43145:111..480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43145 112..480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43145.11014.1

>prot_H-paniculata_contig43145.11014.1 ID=prot_H-paniculata_contig43145.11014.1|Name=mRNA_H-paniculata_contig43145.11014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MNACTYSKLEAIDQLSKNKSLKSKVPRRPFTTKRYSTCLHRIVNYFTHSY
FLPSLSILLPQCFPGAILFNISRKKNAEKPPTGTFRSAINASLLHTPLEV
GGGGVPYRPWFLSGQQKAYRHL*
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mRNA from alignment at H-paniculata_contig43145:104..702+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43145.11014.1 ID=mRNA_H-paniculata_contig43145.11014.1|Name=mRNA_H-paniculata_contig43145.11014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=599bp|location=Sequence derived from alignment at H-paniculata_contig43145:104..702+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGGAATGAACGCATGTACGTACAGTAAATTAGAGGCGATCGATCAG
CTTTCAAAGAATAAGTCGTTGAAAAGCAAAGTACCACGACGGCCCTTTAC
CACTAAACGTTACAGTACATGTCTTCATCGAATCGTCAACTATTTCACCC
ACAGTTACTTCCTCCCCTCCCTCTCTATATTGCTTCCTCAATGTTTCCCG
GGCGCGATACTCTTCAATATTTCCCGTAAAAAAAACGCCGAAAAGCCCCC
AACCGGCACATTTCGTTCCGCAATCAATGCCTCTCTTCTCCACACACCAC
TCGAGGTGGGGGGTGGGGGGGTACCGTACCGGCCATGGTTTCTCTCGGGA
CAGCAAAAAGCCTACCGACACTTATAAAGTCGCTGTCAACACCTTGAACA
GCCTCCTTTATCCGTATAACATGGCCAATTTATCAATCTGCTCCTTCCAT
CAATTGGAGCATTCTCATGAGGGCTTACAGAACGCAGAATTCCTGAAAAG
AAGATATCTGGACAATAGTAAGGCTCCACTGGATGTTACTTCTCCTTGAG
CCAACACTAGCAGTACAGTCGCGGCGCGGCTACTACGACACACACGCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig43145:104..702+

>mRNA_H-paniculata_contig43145.11014.1 ID=mRNA_H-paniculata_contig43145.11014.1|Name=mRNA_H-paniculata_contig43145.11014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig43145:104..702+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGCATGTACGTACAGTAAATTAGAGGCGATCGATCAGCTTTCAAA
GAATAAGTCGTTGAAAAGCAAAGTACCACGACGGCCCTTTACCACTAAAC
GTTACAGTACATGTCTTCATCGAATCGTCAACTATTTCACCCACAGTTAC
TTCCTCCCCTCCCTCTCTATATTGCTTCCTCAATGTTTCCCGGGCGCGAT
ACTCTTCAATATTTCCCGTAAAAAAAACGCCGAAAAGCCCCCAACCGGCA
CATTTCGTTCCGCAATCAATGCCTCTCTTCTCCACACACCACTCGAGGTG
GGGGGTGGGGGGGTACCGTACCGGCCATGGTTTCTCTCGGGACAGCAAAA
AGCCTACCGACACTTATAAATGAACGCATGTACGTACAGTAAATTAGAGG
CGATCGATCAGCTTTCAAAGAATAAGTCGTTGAAAAGCAAAGTACCACGA
CGGCCCTTTACCACTAAACGTTACAGTACATGTCTTCATCGAATCGTCAA
CTATTTCACCCACAGTTACTTCCTCCCCTCCCTCTCTATATTGCTTCCTC
AATGTTTCCCGGGCGCGATACTCTTCAATATTTCCCGTAAAAAAAACGCC
GAAAAGCCCCCAACCGGCACATTTCGTTCCGCAATCAATGCCTCTCTTCT
CCACACACCACTCGAGGTGGGGGGTGGGGGGGTACCGTACCGGCCATGGT
TTCTCTCGGGACAGCAAAAAGCCTACCGACACTTATAA
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