mRNA_H-paniculata_contig43139.11011.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43139.11011.1
Unique NamemRNA_H-paniculata_contig43139.11011.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43139.11011.1 vs. uniprot
Match: A0A6H5KVN3_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN3_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.850e-23
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 TIYESFIRKYSSLSGLTATLIRQSHQFTPVTIGQTLRLHGASLDFFYTLHSIPCIGFEVSRK 186
            TIYESFIRKY++LSG++  LIR SH+F PV IGQTLRL+GAS DFFYTLHSIPC+GFEV+ K
Sbjct:  723 TIYESFIRKYTALSGMSGDLIRFSHKFIPVKIGQTLRLNGASFDFFYTLHSIPCVGFEVTFK 784
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BLAST of mRNA_H-paniculata_contig43139.11011.1 vs. uniprot
Match: D7FYI0_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 7.240e-23
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 TIYESFIRKYSSLSGLTATLIRQSHQFTPVTIGQTLRLHGASLDFFYTLHSIPCIGFEVSRK 186
            TIYESFIRKY++LSG++  LIR SH+F PV IGQTLRL+GA  DFFYTLHSIPC+GFEV+ K
Sbjct:  677 TIYESFIRKYTALSGMSGDLIRYSHKFIPVKIGQTLRLNGACFDFFYTLHSIPCVGFEVTFK 738
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BLAST of mRNA_H-paniculata_contig43139.11011.1 vs. uniprot
Match: A0A836CNA7_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.190e-21
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 TIYESFIRKYSSLSGLTATLIRQSHQFTPVTIGQTLRLHGASLDFFYTLHSIPCIGFEV 177
            TIY SFIRKY++LSGL   L+RQ+H+F PVTIG+TLRL GASL+FFYTLHSIPCIG EV
Sbjct:  359 TIYGSFIRKYAALSGLPPPLLRQTHRFLPVTIGETLRLRGASLNFFYTLHSIPCIGLEV 417
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BLAST of mRNA_H-paniculata_contig43139.11011.1 vs. uniprot
Match: A0A4D9D8U0_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8U0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.250e-16
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 TIYESFIRKYSSLSGLTATLIRQSHQFTPVTIG-QTLRLHGASLDFFYTLHSIPCIGFEV 177
            TIYESFIRKYS+LSG+ A  +  +H F PV IG Q +RL GAS  FFY+LHSIPCIG EV
Sbjct:  270 TIYESFIRKYSALSGIDADFLMSTHHFRPVKIGGQGVRLRGASFRFFYSLHSIPCIGLEV 329
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BLAST of mRNA_H-paniculata_contig43139.11011.1 vs. uniprot
Match: A0A448Z2R0_9STRA (Lactamase_B domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2R0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.230e-16
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 TIYESFIRKYSSLSGLTATLIRQSHQFTPVTIGQTLRLHGASLDFFYTLHSIPCIGFEV 177
            TIY+SFIRKY++LS L   L+R  H++ P  IGQ LR  GA+  FFY+LHSIPC+GF V
Sbjct:  400 TIYKSFIRKYAALSSLNPALLRHCHRYKPAIIGQDLRFQGATFKFFYSLHSIPCVGFRV 458
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BLAST of mRNA_H-paniculata_contig43139.11011.1 vs. uniprot
Match: K0SUD6_THAOC (Lactamase_B domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUD6_THAOC)

HSP 1 Score: 79.7 bits (195), Expect = 7.890e-16
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 TIYESFIRKYSSLSGLTATLIRQSHQFTPVTIGQTLRLHGASLDFFYTLHSIPCIGFEV 177
            TIY+SFIRKY++LS L+  L+R SH++ P  IG+ LR  GA+ +F YTLH+IPC+GF V
Sbjct:  260 TIYKSFIRKYAALSSLSPALLRHSHRYKPAIIGEPLRFQGATFNFTYTLHAIPCVGFRV 318
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BLAST of mRNA_H-paniculata_contig43139.11011.1 vs. uniprot
Match: A0A7S0C4K8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C4K8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.440e-15
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 TIYESFIRKYSSLSGLTATLIRQSHQFTPVTIGQTLRLHGASLDFFYTLHSIPCIGFEV 177
            TIY+SFIRKY++LS     L++ SH++ P  IGQ LR  GA+ +F YTLHSIPC+GF V
Sbjct:  261 TIYKSFIRKYAALSEFNTALLKHSHRYKPAIIGQPLRFQGATFEFTYTLHSIPCVGFRV 319
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BLAST of mRNA_H-paniculata_contig43139.11011.1 vs. uniprot
Match: A0A7S0C3K0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3K0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.470e-15
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 TIYESFIRKYSSLSGLTATLIRQSHQFTPVTIGQTLRLHGASLDFFYTLHSIPCIGFEV 177
            TIY+SFIRKY++LS     L++ SH++ P  IGQ LR  GA+ +F YTLHSIPC+GF V
Sbjct:  261 TIYKSFIRKYAALSEFNTALLKHSHRYKPAIIGQPLRFQGATFEFTYTLHSIPCVGFRV 319
[Close]
BLAST of mRNA_H-paniculata_contig43139.11011.1 vs. uniprot
Match: A0A1E7EX29_9STRA (Lactamase_B domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EX29_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 9.560e-15
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 TIYESFIRKYSSLSGLTATLIRQSHQFTPVTIGQTLRLHGASLDFFYTLHSIPCIGFEV 177
            TIY SFIRKY++L+ L+  L++  H+F    IGQ LR  GA+  FFY+LHSIPCIGF V
Sbjct:  506 TIYRSFIRKYAALASLSPALLKHCHRFKAAIIGQELRFQGATFKFFYSLHSIPCIGFRV 564
[Close]
BLAST of mRNA_H-paniculata_contig43139.11011.1 vs. uniprot
Match: A0A7S4N8F5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N8F5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.570e-14
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 TIYESFIRKYSSLSGLTATLIRQSHQFTPVTIGQTLRLHGASLDFFYTLHSIPCIGFEV 177
            TIY+SFIRKY++LS L+  L+R SH+  P  IG  LR  GA+  F Y LH+IPC+GF+V
Sbjct:  715 TIYKSFIRKYAALSALSPALLRHSHRHKPAIIGTPLRFQGATFQFTYMLHTIPCVGFKV 773
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43139.11011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVN3_9PHAE2.850e-2375.81Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
D7FYI0_ECTSI7.240e-2374.19Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A836CNA7_9STRA1.190e-2176.27Cyclic nucleotide-binding domain-containing protei... [more]
A0A4D9D8U0_9STRA2.250e-1666.67Cyclic nucleotide-binding domain-containing protei... [more]
A0A448Z2R0_9STRA4.230e-1659.32Lactamase_B domain-containing protein n=1 Tax=Pseu... [more]
K0SUD6_THAOC7.890e-1657.63Lactamase_B domain-containing protein (Fragment) n... [more]
A0A7S0C4K8_9STRA1.440e-1557.63Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S0C3K0_9STRA1.470e-1557.63Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1E7EX29_9STRA9.560e-1557.63Lactamase_B domain-containing protein n=1 Tax=Frag... [more]
A0A7S4N8F5_9STRA4.570e-1455.93Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43139contigH-paniculata_contig43139:608..811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue8.3e-20
Seed eggNOG ortholog2880.D7FYI0
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004112,GO:0004114,GO:0004115,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006195,GO:0006198,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008081,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009187,GO:0009214,GO:0009259,GO:0009261,GO:0009987,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019932,GO:0019933,GO:0019934,GO:0019935,GO:0023052,GO:0032101,GO:0033036,GO:0034404,GO:0034613,GO:0034641,GO:0034654,GO:0034655,GO:0035556,GO:0040012,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046058,GO:0046434,GO:0046483,GO:0046700,GO:0047555,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050920,GO:0050926,GO:0051179,GO:0051641,GO:0051716,GO:0055086,GO:0061118,GO:0065007,GO:0070727,GO:0071704,GO:0072521,GO:0072523,GO:0072697,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1990778
EggNOG free text desc.Metallo-beta-lactamase superfamily
EggNOG OGs28VX6@1,2R2P1@2759
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930310.4569058-CDS-H-paniculata_contig43139:607..8111622930310.4569058-CDS-H-paniculata_contig43139:607..811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43139 608..811 +
1691481236.0828078-CDS-H-paniculata_contig43139:607..8111691481236.0828078-CDS-H-paniculata_contig43139:607..811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43139 608..811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43139.11011.1prot_H-paniculata_contig43139.11011.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43139 608..811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43139.11011.1

>prot_H-paniculata_contig43139.11011.1 ID=prot_H-paniculata_contig43139.11011.1|Name=mRNA_H-paniculata_contig43139.11011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
TIYESFIRKYSSLSGLTATLIRQSHQFTPVTIGQTLRLHGASLDFFYTLH
SIPCIGFEVSRKQQKTH*
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mRNA from alignment at H-paniculata_contig43139:608..811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43139.11011.1 ID=mRNA_H-paniculata_contig43139.11011.1|Name=mRNA_H-paniculata_contig43139.11011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig43139:608..811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAATCTACGAGTCCTTCATTCGCAAATATTCATCGCTTTCCGGGCTCAC
GGCGACGCTGATTCGGCAGAGCCATCAGTTCACACCGGTCACGATCGGGC
AGACGCTCCGATTGCATGGAGCTTCCTTGGATTTCTTCTACACGCTGCAT
TCGATCCCCTGCATCGGATTCGAGGTGAGTAGAAAGCAGCAGAAAACACA
CTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig43139:608..811+

>mRNA_H-paniculata_contig43139.11011.1 ID=mRNA_H-paniculata_contig43139.11011.1|Name=mRNA_H-paniculata_contig43139.11011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig43139:608..811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAATCTACGAGTCCTTCATTCGCAAATATTCATCGCTTTCCGGGCTCAC
GGCGACGCTGATTCGGCAGAGCCATCAGTTCACACCGGTCACGATCGGGC
AGACGCTCCGATTGCATGGAGCTTCCTTGGATTTCTTCTACACGCTGCAT
TCGATCCCCTGCATCGGATTCGAGGTGAGTAGAAAGCAGCAGAAAACACA
CTAAACAATCTACGAGTCCTTCATTCGCAAATATTCATCGCTTTCCGGGC
TCACGGCGACGCTGATTCGGCAGAGCCATCAGTTCACACCGGTCACGATC
GGGCAGACGCTCCGATTGCATGGAGCTTCCTTGGATTTCTTCTACACGCT
GCATTCGATCCCCTGCATCGGATTCGAGGTGAGTAGAAAGCAGCAGAAAA
CACACTAA
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