mRNA_H-paniculata_contig4309.10999.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4309.10999.1
Unique NamemRNA_H-paniculata_contig4309.10999.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4309.10999.1 vs. uniprot
Match: A0A2D4C8B9_PYTIN (Short-chain specific acyl-CoA dehydrogenase, mitochondrial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8B9_PYTIN)

HSP 1 Score: 85.9 bits (211), Expect = 2.410e-20
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 VKAMGELGLMGVAISDDNGGTGLDYLAYAIAMEEISRGCASTGVIMSVNNV 153
            VK +GE+GLMGVA+ +  GG GLDYLAYAIAMEEISRGCASTGVIMSVNNV
Sbjct:   66 VKELGEMGLMGVAVDEQYGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNV 116
[Close]
BLAST of mRNA_H-paniculata_contig4309.10999.1 vs. uniprot
Match: A0A6P8XZD0_DROAB (short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X1 n=1 Tax=Drosophila albomicans TaxID=7291 RepID=A0A6P8XZD0_DROAB)

HSP 1 Score: 85.9 bits (211), Expect = 2.260e-19
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VKAMGELGLMGVAISDDNGGTGLDYLAYAIAMEEISRGCASTGVIMSVNN 150
            +K MGELGLMGVA+ ++ GGTGLDYLAYAIAMEEISRGCAS GVIMSVNN
Sbjct:   63 IKQMGELGLMGVAVPEELGGTGLDYLAYAIAMEEISRGCASAGVIMSVNN 112
[Close]
BLAST of mRNA_H-paniculata_contig4309.10999.1 vs. uniprot
Match: D8LNP1_ECTSI (Acyl-CoA dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.280e-19
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 VKAMGELGLMGVAISDDNGGTGLDYLAYAIAMEEISRGCASTGVIMSVNN 150
            V  +GELGLMGVAIS+++GGTGLDYLAYAIAMEEISRGCASTGVIMSVNN
Sbjct:   72 VAQLGELGLMGVAISEEDGGTGLDYLAYAIAMEEISRGCASTGVIMSVNN 121
[Close]
BLAST of mRNA_H-paniculata_contig4309.10999.1 vs. uniprot
Match: A0A3Q0IYQ6_DIACI (short-chain specific acyl-CoA dehydrogenase, mitochondrial-like n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A3Q0IYQ6_DIACI)

HSP 1 Score: 81.3 bits (199), Expect = 4.460e-19
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 VKAMGELGLMGVAISDDNGGTGLDYLAYAIAMEEISRGCASTGVIMSVNN 150
            ++ MGELGLMGV + +D GGTGLDYLAYAIA EEISRGCAS GVIMSVNN
Sbjct:    8 IEKMGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNN 57
[Close]
BLAST of mRNA_H-paniculata_contig4309.10999.1 vs. uniprot
Match: V9IFY4_APICE (Short-chain specific acyl-CoA dehydrogenase n=1 Tax=Apis cerana TaxID=7461 RepID=V9IFY4_APICE)

HSP 1 Score: 81.3 bits (199), Expect = 8.710e-19
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VKAMGELGLMGVAISDDNGGTGLDYLAYAIAMEEISRGCASTGVIMSVNN 150
            VK MGELGLM +AI ++ GGTGLDYLAYAIA+EEISRGCASTG+IMSV+N
Sbjct:   39 VKKMGELGLMSIAIPENLGGTGLDYLAYAIALEEISRGCASTGLIMSVHN 88
[Close]
BLAST of mRNA_H-paniculata_contig4309.10999.1 vs. uniprot
Match: A0A653CTJ8_CALMS (Uncharacterized protein n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653CTJ8_CALMS)

HSP 1 Score: 86.3 bits (212), Expect = 1.510e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VKAMGELGLMGVAISDDNGGTGLDYLAYAIAMEEISRGCASTGVIMSVNN 150
            +K MGELGLM VAI ++ GGTGLDYLAYAIAMEEISRGCASTGVIMSVNN
Sbjct:   62 IKKMGELGLMAVAIPEEYGGTGLDYLAYAIAMEEISRGCASTGVIMSVNN 111
[Close]
BLAST of mRNA_H-paniculata_contig4309.10999.1 vs. uniprot
Match: A0A8K0CEV4_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0CEV4_9COLE)

HSP 1 Score: 86.3 bits (212), Expect = 1.540e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VKAMGELGLMGVAISDDNGGTGLDYLAYAIAMEEISRGCASTGVIMSVNN 150
            +K MGELGLM VAI ++ GGTGLDYLAYAIAMEEISRGCASTGVIMSVNN
Sbjct:   67 IKKMGELGLMAVAIPEEYGGTGLDYLAYAIAMEEISRGCASTGVIMSVNN 116
[Close]
BLAST of mRNA_H-paniculata_contig4309.10999.1 vs. uniprot
Match: A0A6P8XJE7_DROAB (short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X2 n=2 Tax=Drosophila TaxID=32281 RepID=A0A6P8XJE7_DROAB)

HSP 1 Score: 85.9 bits (211), Expect = 2.130e-18
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VKAMGELGLMGVAISDDNGGTGLDYLAYAIAMEEISRGCASTGVIMSVNN 150
            +K MGELGLMGVA+ ++ GGTGLDYLAYAIAMEEISRGCAS GVIMSVNN
Sbjct:   63 IKQMGELGLMGVAVPEELGGTGLDYLAYAIAMEEISRGCASAGVIMSVNN 112
[Close]
BLAST of mRNA_H-paniculata_contig4309.10999.1 vs. uniprot
Match: A0A7S1NP91_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NP91_9EUGL)

HSP 1 Score: 85.9 bits (211), Expect = 2.340e-18
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 VKAMGELGLMGVAISDDNGGTGLDYLAYAIAMEEISRGCASTGVIMSVNN 150
            VK +GELG+MG+AISD+ GG G+DYLAYAIAMEEISRGCASTGVIMSVNN
Sbjct:   76 VKQLGELGMMGMAISDEWGGAGMDYLAYAIAMEEISRGCASTGVIMSVNN 125
[Close]
BLAST of mRNA_H-paniculata_contig4309.10999.1 vs. uniprot
Match: A0A6L5CK89_9INSE (Acyl-CoA_dh_N domain-containing protein (Fragment) n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CK89_9INSE)

HSP 1 Score: 80.1 bits (196), Expect = 2.920e-18
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 VKAMGELGLMGVAISDDNGGTGLDYLAYAIAMEEISRGCASTGVIMSVNN 150
            +K MGELGLM V + +  GGTGLDYLAYA+AMEEISRGCAS GVIMSVNN
Sbjct:   18 IKKMGELGLMAVDVPESFGGTGLDYLAYAVAMEEISRGCASAGVIMSVNN 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4309.10999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4C8B9_PYTIN2.410e-2082.35Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
A0A6P8XZD0_DROAB2.260e-1984.00short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
D8LNP1_ECTSI2.280e-1988.00Acyl-CoA dehydrogenase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A3Q0IYQ6_DIACI4.460e-1980.00short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
V9IFY4_APICE8.710e-1980.00Short-chain specific acyl-CoA dehydrogenase n=1 Ta... [more]
A0A653CTJ8_CALMS1.510e-1886.00Uncharacterized protein n=1 Tax=Callosobruchus mac... [more]
A0A8K0CEV4_9COLE1.540e-1886.00Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A6P8XJE7_DROAB2.130e-1884.00short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
A0A7S1NP91_9EUGL2.340e-1884.00Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A6L5CK89_9INSE2.920e-1878.00Acyl-CoA_dh_N domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4309contigH-paniculata_contig4309:2897..3558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.6e-15
Seed eggNOG ortholog2880.D8LNP1
Preferred nameACADS
KEGG rclassRC00052,RC00068,RC00076,RC00120,RC00148
KEGG koko:K00248
KEGG ReactionR01175,R01178,R02661,R03172,R04751
KEGG Pathwayko00071,ko00280,ko00650,ko01100,ko01110,ko01120,ko01200,ko01212,map00071,map00280,map00650,map01100,map01110,map01120,map01200,map01212
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000062,GO:0000166,GO:0003674,GO:0003824,GO:0003995,GO:0004085,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0006082,GO:0006139,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006629,GO:0006631,GO:0006635,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009062,GO:0009605,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0010467,GO:0014070,GO:0016020,GO:0016042,GO:0016043,GO:0016054,GO:0016070,GO:0016491,GO:0016592,GO:0016627,GO:0017076,GO:0018130,GO:0019395,GO:0019438,GO:0019605,GO:0019626,GO:0019752,GO:0022607,GO:0030258,GO:0030554,GO:0031090,GO:0031667,GO:0031960,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032787,GO:0032991,GO:0033218,GO:0033539,GO:0033993,GO:0034440,GO:0034641,GO:0034645,GO:0034654,GO:0036094,GO:0042221,GO:0042594,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044271,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046359,GO:0046395,GO:0046459,GO:0046483,GO:0048037,GO:0048545,GO:0050660,GO:0050662,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051384,GO:0052890,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0072329,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901567,GO:1901575,GO:1901576,GO:1901681
EggNOG free text desc.oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
EggNOG OGsCOG1960@1,KOG0139@2759
EC1.3.8.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size162
Cds size153
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4309.10999.1prot_H-paniculata_contig4309.10999.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4309 2897..3549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930308.9828935-CDS-H-paniculata_contig4309:2896..29801622930308.9828935-CDS-H-paniculata_contig4309:2896..2980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4309 2897..2980 -
1691481235.480427-CDS-H-paniculata_contig4309:2896..29801691481235.480427-CDS-H-paniculata_contig4309:2896..2980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4309 2897..2980 -
1622930309.0008273-CDS-H-paniculata_contig4309:3480..35491622930309.0008273-CDS-H-paniculata_contig4309:3480..3549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4309 3481..3549 -
1691481235.495504-CDS-H-paniculata_contig4309:3480..35491691481235.495504-CDS-H-paniculata_contig4309:3480..3549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4309 3481..3549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930309.019434-UTR-H-paniculata_contig4309:3549..35581622930309.019434-UTR-H-paniculata_contig4309:3549..3558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4309 3550..3558 -
1691481235.5063703-UTR-H-paniculata_contig4309:3549..35581691481235.5063703-UTR-H-paniculata_contig4309:3549..3558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4309 3550..3558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4309.10999.1

>prot_H-paniculata_contig4309.10999.1 ID=prot_H-paniculata_contig4309.10999.1|Name=mRNA_H-paniculata_contig4309.10999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MGELGLMGVAISDDNGGTGLDYLAYAIAMEEISRGCASTGVIMSVNNVSD
T
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mRNA from alignment at H-paniculata_contig4309:2897..3558-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4309.10999.1 ID=mRNA_H-paniculata_contig4309.10999.1|Name=mRNA_H-paniculata_contig4309.10999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=662bp|location=Sequence derived from alignment at H-paniculata_contig4309:2897..3558- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAGGCCATGGGCGAGCTAGGGTTGATGGGCGTGGCAATCAGTGATGA
CAACGGAGGCACAGGGCTAGATTACCTGGTCAGTTCTTGCTGCGCTCATC
TGCTTTCGCTGATACCATAAATTTGATGGTGTAAGATACTAGTACGATCT
CTAACATCAAACGGTGACCTTGTTTTCAGTATATTGAGGATGGGGGGGGA
GCGGAGTTATGGCAAGCGGCAAGTGGTTTGTCACATCGCGTGTGGTGCCA
TCACGTACCTGGTCAAGCCGCGTGATGCATTTAAAGGGGTTTTGAAGGTG
GTGTGAGAGCAGAGTCTTTTTAGCCTGAAAATGGGTCACACGCAGAAAAG
AAGAGGAGAGAAAAGAAGAGAAACTCTATTAAAACAGAATGAATAAATGC
ATATATGTCTTGTGTTGGAACCTACTGTAGAGCAGCGCTGTTATCGTACA
GATAGTTGTTTCCGAAAATAATAGGAAAGTCACGATGCGAGAGACCATTA
GTACGAGTACGGTACTCTTGATGTGCAAAACTCTTTTGTGTGTCGGGTTG
GCTCCGCTTTGTTTCTTTGGGGGTGCAGGCATATGCGATTGCGATGGAGG
AGATTAGCAGGGGCTGCGCTTCTACAGGCGTAATCATGAGTGTCAATAAC
GTGAGTGATACT
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Coding sequence (CDS) from alignment at H-paniculata_contig4309:2897..3558-

>mRNA_H-paniculata_contig4309.10999.1 ID=mRNA_H-paniculata_contig4309.10999.1|Name=mRNA_H-paniculata_contig4309.10999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig4309:2897..3558- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGAGCTAGGGTTGATGGGCGTGGCAATCAGTGATGACAACGGAGG
CACAGGGCTAGATTACCTGATGGGCGAGCTAGGGTTGATGGGCGTGGCAA
TCAGTGATGACAACGGAGGCACAGGGCTAGATTACCTGGCATATGCGATT
GCGATGGAGGAGATTAGCAGGGGCTGCGCTTCTACAGGCGTAATCATGAG
TGTCAATAACGTGAGTGATACTGCATATGCGATTGCGATGGAGGAGATTA
GCAGGGGCTGCGCTTCTACAGGCGTAATCATGAGTGTCAATAACGTGAGT
GATACT
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