mRNA_H-paniculata_contig4300.10988.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4300.10988.1
Unique NamemRNA_H-paniculata_contig4300.10988.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4300.10988.1 vs. uniprot
Match: D8LLV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLV1_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 6.150e-73
Identity = 132/208 (63.46%), Postives = 156/208 (75.00%), Query Frame = 1
Query:   91 GRMRYVPPPAQATPSKVSPPGKAXXXXXXXXTNAGAWARPQKAASSGPDKWAELAAKETAQLKAGKKMARAAMQQETSVGMSGNDKADILATKTEYDMWTKQDVNQVLAWSRAEQCRIPNKRVAKGGRLHKLINILLNNCDHVNERMSTEKRFADGSRDPSMPSGLELKRLFVAPLAKRVLNKVEEEEIEKSFKDDDPDSDDSEGMAM 714
            G+M+YVPPP                      TNAGAW RP KA   GP +W ELA KE AQLKA KK+ RA  +Q  SVGMSGNDKADI ATK E+D+WTK DV +   W++AE+CRIPNKRVAKGGRLHK INILLNNC+ ++ER+++EKR+ D  RDP++PSGL+LKR FVAPLAKRVLNKVE+EE E++FKDDDPDSDDSEG AM
Sbjct:   54 GKMKYVPPP----------------------TNAGAWNRP-KATGQGPCQWKELADKEDAQLKASKKVMRAEAKQNNSVGMSGNDKADIAATKMEFDLWTKTDVTKTRNWAKAEECRIPNKRVAKGGRLHKFINILLNNCEFISERLASEKRYQDACRDPTLPSGLDLKRQFVAPLAKRVLNKVEDEENEQAFKDDDPDSDDSEGRAM 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4300.10988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLV1_ECTSI6.150e-7363.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4300contigH-paniculata_contig4300:5370..16152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001770.1
Exons8
Model size2406
Cds size702
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4300.10988.1prot_H-paniculata_contig4300.10988.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4300 5385..14463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930307.569566-UTR-H-paniculata_contig4300:5369..53841622930307.569566-UTR-H-paniculata_contig4300:5369..5384Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4300 5370..5384 +
1691481234.9106348-UTR-H-paniculata_contig4300:5369..53841691481234.9106348-UTR-H-paniculata_contig4300:5369..5384Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4300 5370..5384 +
1622930307.7238448-UTR-H-paniculata_contig4300:14463..161521622930307.7238448-UTR-H-paniculata_contig4300:14463..16152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4300 14464..16152 +
1691481235.0054271-UTR-H-paniculata_contig4300:14463..161521691481235.0054271-UTR-H-paniculata_contig4300:14463..16152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4300 14464..16152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930307.5860462-CDS-H-paniculata_contig4300:5384..54231622930307.5860462-CDS-H-paniculata_contig4300:5384..5423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 5385..5423 +
1691481234.9238124-CDS-H-paniculata_contig4300:5384..54231691481234.9238124-CDS-H-paniculata_contig4300:5384..5423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 5385..5423 +
1622930307.6029043-CDS-H-paniculata_contig4300:6045..62041622930307.6029043-CDS-H-paniculata_contig4300:6045..6204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 6046..6204 +
1691481234.9354706-CDS-H-paniculata_contig4300:6045..62041691481234.9354706-CDS-H-paniculata_contig4300:6045..6204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 6046..6204 +
1622930307.6191328-CDS-H-paniculata_contig4300:7440..74911622930307.6191328-CDS-H-paniculata_contig4300:7440..7491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 7441..7491 +
1691481234.9462845-CDS-H-paniculata_contig4300:7440..74911691481234.9462845-CDS-H-paniculata_contig4300:7440..7491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 7441..7491 +
1622930307.6320503-CDS-H-paniculata_contig4300:10806..108411622930307.6320503-CDS-H-paniculata_contig4300:10806..10841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 10807..10841 +
1691481234.9592364-CDS-H-paniculata_contig4300:10806..108411691481234.9592364-CDS-H-paniculata_contig4300:10806..10841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 10807..10841 +
1622930307.6508298-CDS-H-paniculata_contig4300:11719..117891622930307.6508298-CDS-H-paniculata_contig4300:11719..11789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 11720..11789 +
1691481234.970854-CDS-H-paniculata_contig4300:11719..117891691481234.970854-CDS-H-paniculata_contig4300:11719..11789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 11720..11789 +
1622930307.6688094-CDS-H-paniculata_contig4300:12109..122221622930307.6688094-CDS-H-paniculata_contig4300:12109..12222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 12110..12222 +
1691481234.9788384-CDS-H-paniculata_contig4300:12109..122221691481234.9788384-CDS-H-paniculata_contig4300:12109..12222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 12110..12222 +
1622930307.6871965-CDS-H-paniculata_contig4300:12870..130151622930307.6871965-CDS-H-paniculata_contig4300:12870..13015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 12871..13015 +
1691481234.9872565-CDS-H-paniculata_contig4300:12870..130151691481234.9872565-CDS-H-paniculata_contig4300:12870..13015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 12871..13015 +
1622930307.70472-CDS-H-paniculata_contig4300:14373..144631622930307.70472-CDS-H-paniculata_contig4300:14373..14463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 14374..14463 +
1691481234.9965653-CDS-H-paniculata_contig4300:14373..144631691481234.9965653-CDS-H-paniculata_contig4300:14373..14463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4300 14374..14463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4300.10988.1

>prot_H-paniculata_contig4300.10988.1 ID=prot_H-paniculata_contig4300.10988.1|Name=mRNA_H-paniculata_contig4300.10988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
MSSSWTKGAPQNKTKSSAPTPKAGGGRMRYVPPPAQATPSKVSPPGKAKM
KYVPPPTNAGAWARPQKAASSGPDKWAELAAKETAQLKAGKKMARAAMQQ
ETSVGMSGNDKADILATKTEYDMWTKQDVNQVLAWSRAEQCRIPNKRVAK
GGRLHKLINILLNNCDHVNERMSTEKRFADGSRDPSMPSGLELKRLFVAP
LAKRVLNKVEEEEIEKSFKDDDPDSDDSEGMAM*
back to top

mRNA from alignment at H-paniculata_contig4300:5370..16152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4300.10988.1 ID=mRNA_H-paniculata_contig4300.10988.1|Name=mRNA_H-paniculata_contig4300.10988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10783bp|location=Sequence derived from alignment at H-paniculata_contig4300:5370..16152+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAAAGAAAGACTATGTCTAGCTCGTGGACGAAAGGAGCTCCGCAGAA CAAGGTGATTTTGTTAAGCAGCGGAGATAAATTTTTCAAAATGGAGACTT CCCACATCTCAATACTTTTCGCCTCTCTCTTAAGCTGTTGTCACACCGCC CGAAGACTTAAGGGTGTCAAGTGATGCAGTTGATCAAAACGGGCAGCACG ATATGGCTTTGATATTGCCGAAGATTTGCTGCAACTCTCCATCGAACGCC ATGACCATCACCAAATATTCTGCTCTCCCAATTCACTCGGTTCCTCATTT GTTCGGATGTTGATTCCCTGCACAAATGCTAATAGCAGTTGTCTCTACAC CAACACTAAACTCGTATGGTAGCCGGCCAGGGCAAACTGCAATTAGCATG TCATCCATCTGTCCGAGATACGATTGTACACTTCATGACAAGCGTTAGTA AATAGGCCTGAGTCTATACAATTTTCTGTGTGTACGTGAGCCACTTCTAT CCCATGACACTGTACTCGTGGGACACACCGACATGGCGGAGAGAGAACCC GCAGAAGGACTTGAACTCCCTCATTGTGTTGTTGTCTGTTTCTCCGCCAT TTGGTATGTCCTCGAAACCATCGTACCCTTGCTGCCATAACGGGTGACGT TCCTCACTCGTCTCATGTGCCAACAGACCAAGAGCTCAGCTCCGACGCCC AAGGCTGGCGGAGGAAGAATGAGATACGTCCCACCTCCAGCGCAGGCGAC TCCTTCTAAGGTATCGCCGCCGGGAAAGGCAAAGATGAAGTATGTACCGC CCCCGACGAACGCCGGAGCGTGGGCTCGCCCGCAGGTAGGATGGTTAAAT AGTTGTAAAATATATGGGCCCTGTCCACTCTCCCACGTTTTGAGTTTCGA GCTGGTTGCCTTTGGTTTGTTTTTGTGTCGTGGGTCGATGAAGGCGTTGG TACATGGAGTTTGGTTTGTCGTTGTTCCTGTTGTTGGGATGGAACCTGCG TAGTGTTGGTGTTCTGACAAATCAAAGTCAGAGTTGGTAACTTCATTTGG TGCGAAGAATACAGAGACGAATGTGCCCCCCGCATCAACTTTCTACCTCA AATATTCCGTTGTTATAAAATAGATTTTTTCTTTTTCAATGTTGTATGTG GCTTGCTCGGAGACGCAGAGATCATCCAGAATCGTGATTACAGTCGATTA TTAAAGTTTCGCGCAAACAAAGCTAATATGTTCTTTGCTCTGTTCTCACG AACAAGGTAGTCAAGGTACACACGCGCGAAGAATAGCGAAGAACGTAAAT GCTCACGACACGGCCCTGAGGCATTTCGGGAACGTTTTCAACACTCGATA CGCGGACTAACTCAACAATATTTCTAACGCGAATAAAACAATCGGCGTTG ACGGTTACAAAATCACGCGGCGCGTTTGCTAAATGTAGTATTTGGTATTC AACAGCTTTTGTGATTTACTACACTGCACGTATGAATTGGTTGCAGGCAC AATGAACACAATCAGTAATGTTCTTTCTGGTCGCCGTTGCCCTGTGAAAA CAAACATCCATCTGCTTCCACTGTTGGAGTCCCTCACCCTAGGTACGTTG TGTATTCCGCCGCACACACTTCTGCCTAAAATAATTGGTTTTAGGTCCAA CTTCGTTTGTTTTTTTTTTCGTCCGTTAACACGTGGCTTAAACGGCGTTA GATGGGTATATGTGTTTGGGTGAATACCTGGATGTGGAAGCAGCGGAAAA GGTTTTTACCTCAGCCTTCCGGGGGTTAAAAAAAAAGAAGGGTATATGTA GGGGGCGGGGTTCAGGAAACCCATGAACGTCAGAGACGTGCTATTATAGA TATTATAGATATTATCATGGTCTCTGCGTGCTTCAAATTCATGCCCCGCA AGCAACCCCTCTAATCCATCGTTCAAATTTGTCTCCCCGCGCACTTTCAC CGTTGTGTCCGTTGCTATGCCGTTCCTACGTTCCATGTTTGTTACTCTCT GGTGCTTATTCGTGAATGTTGCTACTTGTTTTTGCAAACGATCTCGATTT ACTTGCGATCTATTCCTCCAGAAAGCTGCTAGCAGCGGTCCTGATAAATG GGCGGAGCTCGCTGCTAAAGAGGTCTGTTCATTTTTTTCTTGTTTTTTTT TTTCCTTTTTAGCATTATTTTTTCGATAGTCACTCTTGATGTACATGGTG CTTGGTATATTTTTGTCTTATTATTATTATTATTATTATTATTGTTTTAT TGCTGTTGTAACAATATTAATTGAAAGCCGGTCGGGCTACTTGCTGGGCT CATGCCCCGCCTGCCTTTGTTTTCGTGTCGTGAACGAAATAACGTGAAAG CCAAGCCCGAGGGTTGACTTGACGGATCAAATCAAGTGGAGGCCAGCGAA GAAACAACCACAAGACGGTGAAGGACCGTCAGACCAAAGCACCATTTCAA TGAAAGAAAAAATAATTAAGAAAATATATATTTTAACTCCGGCCCTGTGA GAGAGACGCATGGCCTCGCGCGTTGAACTGCACCCAGTCTGTACCTGGAC GTGAGCACACTTGACCCGAGAGAAGCGATGTATACATATATTAACCATAC ACGCACACGCAAGAAAACACAAAAGGAAGAAAGGCGCATTGTGCTGGTGT TCTATCTATCTATCTATCTATCTATCTATCTAATCAAGCGGAGGCCAGCG AAAAGAAAACGGAATGCATGCAGCATGTATAGAGTCGCACCACCTATGTT CGCACATGTTTGATCCGCGGGCATCGATTTGGTTCCCTAGGCGACGATTC GCTCGCTCTTGAGGCCCGTGAGACGGACGTTAGTTATGTATGTCGCGCCT TTTTTGCTTGCTCTGCCTTTATTTGTTATTGTGTTATGAGGCGTAGACTT GCAGTCCGTTTGATAAAGATCTTGTTGGTTCCATGTTTTAGTCACCGATG TTTCATGTTGTGATCACTACATACATCTTGTTGCGGTAGGTCACTACTGA TCGTTGAAGAGGGGGTGGTGATGGCAAGGATACGCTTACGGTATTGTGTG ATAATATTTATTTTCAGTATTATGCTGCTGTAGTTATCTATCGATGTATG TACTTTATTAACAACAACAACAGTCAAAGAGCAATCTAGTACATCACAGA CGGTTGCATCGTCAGCGTTACAGTAAACTACAGTCATGGTATTTGTCATA CCCGTGGTACACTCATTGTAATAAGTCACCTAATATTATTGTAAGGTCTG CGAGACGGACGGGTCATGAAGCTCGCACGCACGAAACTAGTTTCAGTCTG CACATGGCTGCGTGCAGGCACGTGAAAATTCACGTTAAAGGTGGTGCGAA ACTAACCATAGTCAGGACATGGCTGCGTGCACGCACGCGTAAATTACGTT GAAATTGGTATAAGACTAATAACAGTCAGTATACTTCCAGTCAGTACATG GCTTGCCTGGTGTTGTACTTGCGACCCAGATCCGGCTGCTATGTCAATAA AACAAAAAAGATACCGGCTCCAGCCCCGTGAGAGAGACGCAATTACAAGT TATTCAGTGCATGGCTGTTACGCACGCGCGGAACTAATATCACTTCTTCA CTTGTTCGTAGTGTCGATCGATTCACCACAACATCTCCACTCCACGCACA AAACTAAATTATGGTTGCGTTGCGCGCATGCACTAATAAAGTGGAGGCCA GCACAATAAAAAAAGGATACATGCAGCAAAACCACAAACACTTGAATTTT GTAAGGAGGTCCACGACCGCATCTCCTATTTTCGCACGGGATTGATTCGT GGACATCGATTTGGTTCTCTCGGGGACTGTCCTCTCGCTGATGAGGCCCG CGAGACGAATGATGGCTCGTACTCACCGCGGAGACGTGACACGTATGATG TCACAATGACCGCGAGATTCCGCCCCGTTCCTGCCGAGTTAGATCCCGCC GTTTTTTTTGTCCTTTTGTGAGATTCGCGATCTTTTCGACCGCGGGACGA TGAAGCACCGTGAGACCAAAGCACCATTTCAATGAAAAAAAAAATAATTA AGAAAATATATATGTCAACTTCGGCCCCGTGAGAGAGATGCATGGCCTCA CGCGTTGAACTGTATTCAGTCCGTGCCTGGACGTGAGCACACTTGGCCCG AAGAGAAGCCAAGGATACATATCATAACCATACATGTAGACGCAAGAAAA GCACGAAAGAAAAAAAAGCGCTTTGTGCTGGTGCTTTATCTCTTTATCTC TGTATCTATCTAATCAAGCGGAGGGCCAGCGCAAAAAAATGATGCATACA GCAAAAACCCTAAACACTTGAATTTTATAGGAAGGCTCACGGTCGCACCA CCTGTTTTCACGCATGATTGATCCGTGGGCGTCGATTTGGTACTCTTGGC GACCGTTCACTCGCCAGTGAGGCCCCCGAGACGGACGATGGCTCGCACTC ACCGCGGGGACGTGGTGCTAACAATGTCAGAACAACCGTGAGATTCCGCC ACGTTTCCGCGGAGCTAGGTCCCGCCGTTCAACACTCTAACGGAACATGG TCTTTCCGTCGTTTTGCTACACTCGCAAGATTCATGATTTTTTCACGGGA GCGCACGGGAAGGCGAGGCACCGTGAGGGCAAATCACTGGGATATATTGT GACAAAAAAACACGCCTGCCCACGGTGACGGGGGGATAGGGACTGGATCT GCAAAAAGCTGCGCTGTGGTGCATCGCGCGAGATTTTCTGAAGTTCTATT ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAT TATTATTATTACGCGTTTTTTATGATTTCCTTTTCAGTAAATATATAAAC ATATCACGACTTAAAAGTAACCTTCCACACACTGTTGTTAAATTTTGATT ATCGAAACGGGTAGCATAAAACGTAATATTCGTCAATTTGGCCACGGGGG GGCCAAAGAGTTCATATTGTTATCCCCAGGATGCTCAAGCTTTCGGATCA AGTGGTCAAATTGAAGGAGGAAACAATTTTTTTTTTTTTTTTCAACCCCC GGAAGGCTGAGGCAATAATAGGGGTGTGCATGTTGTGTCCCGATCAACAT CAACCACCCGGAGCGTTCTTTTTTTTTTTCAAGAATATATTTGACAGATT GCTCCTGCCGTGAAATTTCGCCACGTTTCGTGAATCTTCTTTGGATGTGG GTCAACATGTTCATTTTAATGAATTTAATAGAGACTACGGGTCACGTCTT CATGCCAAGTAGAGAGAGGACCCTTGCGTGTCCGTCGAGTGTTTCATCGA TTGAGGCTATAACCGAAATACAGCGGCGGCTATGGTCTGAACTTTTCTAA CGAATTTTACTCTCTTTTGCAACTTCTTTCTTTTTTTTCGGTATGAATCC ATCCAACTAAACACGTGGGCTTGCTTGTGTACGGCAGACCGCACAGCTGA AGGCTGGCAAAAAAATGGCGAGGTGAGATGCATGTTAGTATATATATATA TTTTTTTTTAATGTGTCGCGTTTTGAGTTTCCGATTCTGCCGTGATGACA GACCTTTCTGGATGCTAAGTGTTGTGGATGATGACTTTTCGAAATAGACG ATGGAGGTTCGGAGTGATTCATTTTTGTAAGGCGACTGATCGTTATCGTT AATTTCCGAGTTGGGAACATAATGTGTGTTCATGTAACTTCAGCATGACA CAAGAACACTATGTACTATCTTCAAGTCGTTTTCCGTATCGTAATTCTGT TATTTGTGGCGTTGACTTTCAGCCTTGTGCTCATCGCGGGACTGAGCGAT TGGACTGAATTATTGAAAGAAAAACCTAGAAAATCGTATTGGAAGATCCA GAGTGGGAATGCTGGTAACTATTGGTGTAGGCGTAATCGATACCTGGTTG AACGACAAGCAAAAATATGGACATAGTGATAATGGATGATGTCTGACGTT GGACATCATAATGGAGGACAAGTCGAGATTAGAAGGGGTACGAACCATTC CACGTGCATGGGGCTGTACCTGAATCGTGCATCACAGGATATTCCGTGTA CGTACCTTTTTTTCTGGGAAGAGGCGACCCTTGATCATTCCCTGTATGAT GCCCGTTATAAGTCGTCATGTTTTCGATAGTTGTGCTGGTTGCCTGGAAT TATGATCACTTTCTGTAACGTATCGTTGTGCTCTTAAGTTTGTGCGATTT GTGGATAATGACCAAGTACTCGAGCAACGTAAAAATTCTGAGCATACCTC CATTCGTTTTACGGTTATTTTCACGTTTTCTATAGTAAATTTATGCGTGT GTGACCTCCCCCCCCCCCCTGATCCATTTTTTTTTTCGGAACCGTTTCAG AGCCGCGATGCAACAGGAGACCTCGGTGGGCATGAGTGGAAACGATAAGG CGGACATTTTGGCGACAAAGGTAGATCTGCTAACAACAAGGAACGATCGG GGGATTGTTCTCTCAGGGAGAAATTCATTGACGTACGTAAGGGGGGGGCG AAAACTGAAGCGTCTTGATAGCTGGATTGGTGTTAGCACACTTGTTTCCC TCTGTACTATCTAGCTTGATTCTTGATTTTAAAAATCTGCATTTAACGTC GAACTGTATGTGGTAGTGTACTTGTTGTCTGTGCGATATTAACTCCATCC GCGATAGCCATATTATGGAATGCAGTAACAAGCACATCGATAGTGATAAT GACCGCAACGAACTGGAAAATGACCACGAAAACGGTGCAGACGGAGTACG ACATGTGGACGAAGCAGGACGTGAACCAAGTACTAGCGTGGTCGCGAGCT GAACAGTGCAGGATCCCGAACAAGCGAGTTGCCAAGGGCGGCCGACTTCA CAAGTGAGAGGCTAGAAGGAAGGATTGCTCTCTAGCTGCTAGTCTGTATG AATATTTGAAGTGTTTTTCATGTCCCCCTTGAACAAGAGACAAGGAAATG AGCTCCTCAAACCCATGTAGTTTCTTTTTGTTTTGTTTTTTTGCAAAGGT CGAGTGACTTCATACACGAAAAAGAATTATATCTTTGCTGTAAACTGTCA CTTCAACAGTCGACTTGATAAGCGAGGAGGCTTGTCTCTTGTGTAACCCC CCTTGTCAACGTACTTGCTACAGTTCAACACAAAGAGCCTTTTCTCAACC ATGTTGGATAGGTAGAACTCAAACAAGCGCTATCTCCGTCGTGGGTTGTA CACATGGAGATAATTTGTACACTTGACGACTCTAGTCAAGTGAGTCCAAT ATTCAAAGCGCCACCTATACATGCCGTTTTATTTCCTGAGGCATAGCGAA AGTGATATTTTCTTGTACACTTGCTCTTTCTCGTCCTATTTATTTCTCTC TCTTCTGGTCGTATTTTGTTGTCGGTTTTTGTGTTTGTTTTTCGGCAGGC GAACGGCGGGCGAATAATCACCCATATCCACCGCTCCTGTATGTATTCCT CCGTTAATCTATTTTTTCATCCGTTCCTTCTTGACTCAATCATCCACCTA GGCTCATCAACATCCTGCTTAACAACTGCGACCACGTGAACGAGCGAATG TCGACGGAAAAGCGCTTCGCTGATGGTAGCAGAGACCCTTCCATGCCCAG CGGCCTAGAGCTCAAGAGACTGTTCGTCGCTCCTTTGGCCAAGCGAGTGA GTGCCTGACCTGTCGATCGTTAAGGCTGTGGGCGATAACCTTCTGTTCAT TTGCTGTAAACCTTGCTTGTCCCGGAATATGTACCTGATCAGGAAGGCAA TACCCAGGGTATATGTGACCAACCATTGTATTTGAAGATCCGTACGGGTT GACTGATATAGAACGTCTCACCTGCAAGACCTCTCTTACTATAGTCCATA GTTCGGAAACCGACCGTGTGGTGTACGGGTTTTTAAGAGACCCACACCCT GTGTCATTCGTGATGTGGTTTGTGCTTCGGGCTTCAATGATGTGCTGTTG TGGTGGAACTCAAGGATCGTACCAACTCCTGTCGGTCTGTTGGCAATATT GTCTTTAGAGCTCCCTATCCCCATAGTCATGTGGTGGACAGCTTCGCAAT ATTTTCACATGTGCTCTATGTGTGATTATTTGGATATATAGGAAAGGAAA CTAGTGTTCAAATTACCCAATTACTGGTAGGGGTTTAGTATGCTGCGGTT GTTCGATTGGTAATGATATTCTTTTTTTAATATAATATGCACGTATTTAT TAGGTACTAAAGCGTCACCTGGTCGTGAATGTAAAAGCATATTTGTTGGT GTTTATCGTTTGTAGTTTTTCAAGCACAGGAAGCGGCGTTTATTAGTGTT CAAAGGACACAAGAATGTCGACATTAGAGTTACTTCGCTACTAAGTTAAT ATATATATATATGAAATACAAAATAATTCAAATAAAACACAAACGCTATC CGATCGACGTCTGGTGAACCAACATTGCCAGTAAAATTTTTCTGATATCT GCGTCAAAGTCCAGCGTATAACCGGTAAACCTGACTACTACTTTTGTAGG GGGGAGGGATTTCGTTTCATTTCTTTTGTTTTCATCATGGATGGGGAAGG GGTAATTGCAGAGCAAGGTTGGGAAGCGTTCATGGGTGATGTAAAAACAA TACAAGATCGTGCGCATCTGCTTCGGGACGATGTCGGGGACGATTGCGAA ACAACAGCCGGGGGTTGTTGGTGTACAATATGATCGGTCATCACAAGAAA CCAGGTGTTCAAGTTCGTCTCGATCATGGGTTGCGCCTGATGGATACATG TTTTTCCCGTCTTGTATTAGTCCATCATTTGATCATAACCCGTCGGTCGG GAGGCTGGAAGGGCACTACTGCGCGGTGGGGGTTGTCGTCCCATCCGCTT TTCAATGCCGGTACTAGTGATTGTAGTACGCATCGTCTCTTCCTTTCTCT TCCATAGTCTCCCGTTAGTACCGTGGTGGTCATCATCTCTGATCTCTTTG TACGTCTTGCTTCATATGCTCCCTCTTTGAAATACGATTTTGTTATTTGG TCAGGTGCTGAACAAGGTGGAGGAGGAAGAAATTGAGAAGTCGTTCAAAG ACGACGACCCCGACAGTGACGACAGCGAGGGCATGGCCATGTAATATCTA TACCTGTCAATGATTGTGAAGAAGAAAAAAGCACATGGCTTCTTTTTTTT CTTTTTTTTCTTTTTTTTTTTCGGGACATGGGAGTATATCGTTCTTCAAC TTCTATAGGCTACCGTAAACAGAGCAACGCCAACCATCGTGTCCCTGTGT CAAAATGTAACATACACTGTCGTGCCGGCGTACAGTAGCGTATTGCTGGC AGGTAGTGTGGTGCCACCCTCCCCCTACAAACACGATGCCGAACGCGTAG TCAGATTACAGAACGGGCTGCGGGCGGCATCGTGGTTGCTGTGCCTCTGT ATCACGGGATCCCGTACCCACCCTTGTTACAGAGAGCCTGTGTGTATGGA TATGTGGAACGCGTTACAGTACCGTTGTTGACGGCTGCGCGCATGGAGGG AGCGGTTGGGAGGAGATTGGGGCGTACTCGTGCTTTGCATGTTGTAGTTG CTGGAGGGAGGAGTATCCTGCAGCCTGTGGACAAAGACCTTGAGGGTGTA AGTTGGCGGCTATGCTTATGTTTGTTTTTGTAAAGTGCAGTATATGTGGT GCAATTTTGTGCGTGTGTGATGTGATTTCCTCCCCGAGTTTTACCTCGAT AGTGTGGACACTGAGATGACTTGCTGAGGCGCCAAGCGAAGAGTTGAGAG GTGTCGAGGCGGTGGAGCGATTGTGCGTGGGATAGGGTGCATGCAGGTGC TTCTGTGTAACGGGATCCTCGGATGTTGTACATTGCGCTTTAGTCCGCGC TAGACTGTTGGGCGCTTGTCTATCTATTGTAGCGTCTGTTTCCCTCAAGA GCGTGCTTTCGACTACGTTGTTACATGGGGTTGTGTAGGCTGGCTCTTTT TGTATATATACATATCTTGATTATTTTTTCAATGCCGCGTGATGCAGACG CCCGTTCTAGCGGTATTATTATATGTATCTGTGCGTGCGTGTCTTCCTCT TATCTTTTCGCCATGCGTGTTGGCTCAGGACAGATCTTCCTGCAAATAAT ATCAAACATGTTCCTGTTGTACATGAGGTAAAGCACCAGTACTGGAGCAT ATCAGCTTGTTTTTTTGTAGATCTACCTGCGATAACGTGATGGTGGGATG GCGAAAAGGATGGGCGGTAGTAGTCAATGTTACTGTGACTGTTGAGGGGT GGGGCGGGACTGGGCGACCGAGGGGGAGAGGGATCACGTAGTGGAATAAT TGAATACAGTAGCATTGCTTCGAGTGAGGCACTGTATAGGAGATGTTTTT AGGCACTATATTGTTAGCTGTAGGCGAACTTGTTGACCGCAGGACACGCA CGATAGTCCTATCTAGCTTCTGTGTGAGTGTATTAAGTGCGATGCGGATT GATGATTGGTTGCGTCGTGTGCTGTGGTGAGTGATAAAAACTGCTACTGT GAACGTGTGTACAAGTACTGCGCGTACCCCAAGTTATTTCCCATTGGTTG TGGGGCGTTGTCTGCATCTCTATGTATGTGCTTGCATACGGTTGTTCGAG AGAGGGGTGGTTGTAGTGATGGTGTTGAGCTGTTGTGTTCTGACCGTTGA TACGTGCCTACGGCAGCTAGTAGGCGCGGACAACGACCAACCAACCGGCC AAATTTCTCCTCACAAGCAACTGTCTTTTTTCTTCGCAGGAGTTCATCGG TAGGGAGGAAGTGGTATTGTTCCAGCGCTTAGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4300:5370..16152+

>mRNA_H-paniculata_contig4300.10988.1 ID=mRNA_H-paniculata_contig4300.10988.1|Name=mRNA_H-paniculata_contig4300.10988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig4300:5370..16152+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTAGCTCGTGGACGAAAGGAGCTCCGCAGAACAAGATGTCTAGCTC
GTGGACGAAAGGAGCTCCGCAGAACAAGACCAAGAGCTCAGCTCCGACGC
CCAAGGCTGGCGGAGGAAGAATGAGATACGTCCCACCTCCAGCGCAGGCG
ACTCCTTCTAAGGTATCGCCGCCGGGAAAGGCAAAGATGAAGTATGTACC
GCCCCCGACGAACGCCGGAGCGTGGGCTCGCCCGCAGACCAAGAGCTCAG
CTCCGACGCCCAAGGCTGGCGGAGGAAGAATGAGATACGTCCCACCTCCA
GCGCAGGCGACTCCTTCTAAGGTATCGCCGCCGGGAAAGGCAAAGATGAA
GTATGTACCGCCCCCGACGAACGCCGGAGCGTGGGCTCGCCCGCAGAAAG
CTGCTAGCAGCGGTCCTGATAAATGGGCGGAGCTCGCTGCTAAAGAGAAA
GCTGCTAGCAGCGGTCCTGATAAATGGGCGGAGCTCGCTGCTAAAGAGAC
CGCACAGCTGAAGGCTGGCAAAAAAATGGCGAGACCGCACAGCTGAAGGC
TGGCAAAAAAATGGCGAGAGCCGCGATGCAACAGGAGACCTCGGTGGGCA
TGAGTGGAAACGATAAGGCGGACATTTTGGCGACAAAGAGCCGCGATGCA
ACAGGAGACCTCGGTGGGCATGAGTGGAAACGATAAGGCGGACATTTTGG
CGACAAAGACGGAGTACGACATGTGGACGAAGCAGGACGTGAACCAAGTA
CTAGCGTGGTCGCGAGCTGAACAGTGCAGGATCCCGAACAAGCGAGTTGC
CAAGGGCGGCCGACTTCACAAACGGAGTACGACATGTGGACGAAGCAGGA
CGTGAACCAAGTACTAGCGTGGTCGCGAGCTGAACAGTGCAGGATCCCGA
ACAAGCGAGTTGCCAAGGGCGGCCGACTTCACAAGCTCATCAACATCCTG
CTTAACAACTGCGACCACGTGAACGAGCGAATGTCGACGGAAAAGCGCTT
CGCTGATGGTAGCAGAGACCCTTCCATGCCCAGCGGCCTAGAGCTCAAGA
GACTGTTCGTCGCTCCTTTGGCCAAGCGAGCTCATCAACATCCTGCTTAA
CAACTGCGACCACGTGAACGAGCGAATGTCGACGGAAAAGCGCTTCGCTG
ATGGTAGCAGAGACCCTTCCATGCCCAGCGGCCTAGAGCTCAAGAGACTG
TTCGTCGCTCCTTTGGCCAAGCGAGTGCTGAACAAGGTGGAGGAGGAAGA
AATTGAGAAGTCGTTCAAAGACGACGACCCCGACAGTGACGACAGCGAGG
GCATGGCCATGTAAGTGCTGAACAAGGTGGAGGAGGAAGAAATTGAGAAG
TCGTTCAAAGACGACGACCCCGACAGTGACGACAGCGAGGGCATGGCCAT
GTAA
back to top