mRNA_H-paniculata_contig42994.10982.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42994.10982.1
Unique NamemRNA_H-paniculata_contig42994.10982.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42994.10982.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 1.930e-61
Identity = 119/291 (40.89%), Postives = 171/291 (58.76%), Query Frame = 1
Query:    7 RIVRLNKAMYGLKQAGRMWSKRLVEVLVINVGMTQSKSDPCVFRLEKNGVVGMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWCLGCAFWRDIVSGVVRITQRTFVDTVVKPFDVETESNLLASQQVDLGSRRVDEDLSDKPVHSAVGSLIW*SGMTRPDIASAVRAVARQAYNPTDRHWKAVVKIISYLKRTKDL----------GLVI------------------------------------ITMFEDNQGAMAIAENPTSAGRSKHIDVWYHFIREL 738
            +I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W  GCA  RD+ +G ++I+Q  ++D++VK FDV++ S + AS  VDLG +R +E+  + PV  A+GS++W S  +RPD++ AVRAVAR A+ P  RHW A+ KI+ YLK T+DL          GL +                                    I + ED+QGA+A+ +NP S+GR+KHIDV +HFIR L
Sbjct:  607 KIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDNENGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLSITYQRGSGLGLAVASSTEAEYIAAGEGVKEALFVRAVLLFVAPETSGSSIQVLEDSQGAIALVQNPLSSGRTKHIDVRFHFIRGL 896          
BLAST of mRNA_H-paniculata_contig42994.10982.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 2.990e-60
Identity = 124/347 (35.73%), Postives = 171/347 (49.28%), Query Frame = 1
Query:    1 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVINVGMTQSKSDPCVFRLEKNGVVGMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWCLGCAFWRDIVSGVVRITQRTFVDTVVKPFDVETESNLLASQQVDLGSRRVDEDLSDKPVHSAVGSLIW*SGMTRPDIASAVRAVARQAYNPTDRHWKAVVKIISYLKRTKDLGLVI------------------------------------------------------------------------------------ITMFEDNQGAMAIAENPTSAGRSKHIDVWYHFIRELIARKVLRVKYKKGEDQ 786
            S ++V+  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR  K+ VV        D ++VAG    C  L A+L   F T   GE  W  GCA  RD+ +G +RI+Q  ++D++V  FDV++ S++ AS  VD+G +R DE   + PV  A+GS++W S  +RPDI+ AVRAVAR A+ P +RHWKA+VKI++YLK T+DLG+                                                                                      I + EDNQGAMA+ +NP S+ RSKHIDV YHFIR L     + +K+    +Q
Sbjct:  138 SHKVVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQ 483          
BLAST of mRNA_H-paniculata_contig42994.10982.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.040e-58
Identity = 123/347 (35.45%), Postives = 176/347 (50.72%), Query Frame = 1
Query:    1 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVINVGMTQSKSDPCVFRLEKNGVVGMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWCLGCAFWRDIVSGVVRITQRTFVDTVVKPFDVETESNLLASQQVDLGSRRVDEDLSDKPVHSAVGSLIW*SGMTRPDIASAVRAVARQAYNPTDRHWKAVVKIISYLKRTKDLGLVI------------------------------------------------------------------------------------ITMFEDNQGAMAIAENPTSAGRSKHIDVWYHFIRELIARKVLRVKYKKGEDQ 786
            S +I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W  GCA  RD+ +G +RI+Q  ++D++V+ FDV++ S + A+   DLG +R DE+  + PV  A+GS++W S  +RPD++ AVRAVAR A+ P  RHW A+ KI+ YLK T+DLG+                                                                                      I + EDNQGA+A+ +NP S+GR+KHIDV YHFIR L     + VK+    +Q
Sbjct:  875 SHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 1220          
BLAST of mRNA_H-paniculata_contig42994.10982.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.120e-58
Identity = 123/347 (35.45%), Postives = 176/347 (50.72%), Query Frame = 1
Query:    1 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVINVGMTQSKSDPCVFRLEKNGVVGMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWCLGCAFWRDIVSGVVRITQRTFVDTVVKPFDVETESNLLASQQVDLGSRRVDEDLSDKPVHSAVGSLIW*SGMTRPDIASAVRAVARQAYNPTDRHWKAVVKIISYLKRTKDLGLVI------------------------------------------------------------------------------------ITMFEDNQGAMAIAENPTSAGRSKHIDVWYHFIRELIARKVLRVKYKKGEDQ 786
            S +I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W  GCA  RD+ +G +RI+Q  ++D++V+ FDV++ S + A+   DLG +R DE+  + PV  A+GS++W S  +RPD++ AVRAVAR A+ P  RHW A+ KI+ YLK T+DLG+                                                                                      I + EDNQGA+A+ +NP S+GR+KHIDV YHFIR L     + VK+    +Q
Sbjct: 1254 SHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 1599          
BLAST of mRNA_H-paniculata_contig42994.10982.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.120e-58
Identity = 123/347 (35.45%), Postives = 176/347 (50.72%), Query Frame = 1
Query:    1 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVINVGMTQSKSDPCVFRLEKNGVVGMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWCLGCAFWRDIVSGVVRITQRTFVDTVVKPFDVETESNLLASQQVDLGSRRVDEDLSDKPVHSAVGSLIW*SGMTRPDIASAVRAVARQAYNPTDRHWKAVVKIISYLKRTKDLGLVI------------------------------------------------------------------------------------ITMFEDNQGAMAIAENPTSAGRSKHIDVWYHFIRELIARKVLRVKYKKGEDQ 786
            S +I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W  GCA  RD+ +G +RI+Q  ++D++V+ FDV++ S + A+   DLG +R DE+  + PV  A+GS++W S  +RPD++ AVRAVAR A+ P  RHW A+ KI+ YLK T+DLG+                                                                                      I + EDNQGA+A+ +NP S+GR+KHIDV YHFIR L     + VK+    +Q
Sbjct: 1274 SHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 1619          
BLAST of mRNA_H-paniculata_contig42994.10982.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.130e-58
Identity = 123/347 (35.45%), Postives = 176/347 (50.72%), Query Frame = 1
Query:    1 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVINVGMTQSKSDPCVFRLEKNGVVGMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWCLGCAFWRDIVSGVVRITQRTFVDTVVKPFDVETESNLLASQQVDLGSRRVDEDLSDKPVHSAVGSLIW*SGMTRPDIASAVRAVARQAYNPTDRHWKAVVKIISYLKRTKDLGLVI------------------------------------------------------------------------------------ITMFEDNQGAMAIAENPTSAGRSKHIDVWYHFIRELIARKVLRVKYKKGEDQ 786
            S +I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W  GCA  RD+ +G +RI+Q  ++D++V+ FDV++ S + A+   DLG +R DE+  + PV  A+GS++W S  +RPD++ AVRAVAR A+ P  RHW A+ KI+ YLK T+DLG+                                                                                      I + EDNQGA+A+ +NP S+GR+KHIDV YHFIR L     + VK+    +Q
Sbjct: 1417 SHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 1762          
BLAST of mRNA_H-paniculata_contig42994.10982.1 vs. uniprot
Match: A0A6H5JYF4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF4_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.080e-57
Identity = 121/347 (34.87%), Postives = 172/347 (49.57%), Query Frame = 1
Query:    1 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVINVGMTQSKSDPCVFRLEKNGVVGMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWCLGCAFWRDIVSGVVRITQRTFVDTVVKPFDVETESNLLASQQVDLGSRRVDEDLSDKPVHSAVGSLIW*SGMTRPDIASAVRAVARQAYNPTDRHWKAVVKIISYLKRTKDLGLVI------------------------------------------------------------------------------------ITMFEDNQGAMAIAENPTSAGRSKHIDVWYHFIRELIARKVLRVKYKKGEDQ 786
            S  IV+  +A+YGLKQ+GR W       LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F TT  GE +W  GCA  RD+ +G + I+Q  ++D++VK FDV++   + A+   DLG +R DE+  + PV  A+GS++W S  +RPD++ AVRAVAR A+ P  RHW A+ KI+ YL  T+DLG+                                                                                      I + EDNQGA+AI +N  S+GR+KHIDV +HFI  L   + + VK+    +Q
Sbjct:   33 SHNIVKAERAIYGLKQSGRQWY-HAANTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTTNPGECQWLDGCAIVRDVEAGTLGISQTAYIDSMVKRFDVQSTYRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARLAHAPAKRHWDAIQKILGYLTETRDLGITYQRGSGSGLAVYVDASYADKENRRSFGVRVGDDGWRYRSHGSKTQSIVSLSSTEAEYIAAGERVKEALFVRDVLSFVAPETSGSSIQVLEDNQGAIAIMQNLLSSGRTKHIDVRFHFIPGLFRSEEITVKFVSTTEQ 377          
BLAST of mRNA_H-paniculata_contig42994.10982.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.110e-57
Identity = 123/347 (35.45%), Postives = 174/347 (50.14%), Query Frame = 1
Query:    1 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVINVGMTQSKSDPCVFRLEKNGVVGMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWCLGCAFWRDIVSGVVRITQRTFVDTVVKPFDVETESNLLASQQVDLGSRRVDEDLSDKPVHSAVGSLIW*SGMTRPDIASAVRAVARQAYNPTDRHWKAVVKIISYLKRTKDLGLVI------------------------------------------------------------------------------------ITMFEDNQGAMAIAENPTSAGRSKHIDVWYHFIRELIARKVLRVKYKKGEDQ 786
            S +IV+  +A+YGLKQ+GR W   + + LV N G  Q K+DPCVF    N VV +I+ ++VDD++VAG    C+ L A+L  +F T   GE +W  GCA  RD+ +G   I+Q   +D+++K FDV++   + AS  VDLG +R DE   + PV  A+GS++W S  +RPD++ AVRAVAR A+ P  RHW A+ KI+ YLK T+DLG+                                                                                      I +F+DNQGA+A+ +NP S+GR+KHIDV YHFIR L     + VK+    +Q
Sbjct:  471 SHKIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFCKMVNEVVVLIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGEREWSDGCAIERDVQAGTFHISQTANIDSMMKRFDVQSTFRIPASPGVDLGPKRDDEKGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDKHSLSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVSAVLSLIAPETSGSSIQVFQDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 816          
BLAST of mRNA_H-paniculata_contig42994.10982.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 1.090e-56
Identity = 123/347 (35.45%), Postives = 173/347 (49.86%), Query Frame = 1
Query:    1 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVINVGMTQSKSDPCVFRLEKNGVVGMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWCLGCAFWRDIVSGVVRITQRTFVDTVVKPFDVETESNLLASQQVDLGSRRVDEDLSDKPVHSAVGSLIW*SGMTRPDIASAVRAVARQAYNPTDRHWKAVVKIISYLKRTKDLGLV----------------------------------------------IITMFE--------------------------------------------DNQGAMAIAENPTSAGRSKHIDVWYHFIRELIARKVLRVKY 768
            S  I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T    E +W  GCA  RD+ +G +RI+Q  ++D++VK FDV++ S + AS  VDLG +R DE   + PV  A+GS++W S  +RPD++ AVRAVAR A+ P  RHW A+ KI+ YLK T+DLG+                                               I+++                                              DNQGAMA+ +NP S+GR+KHIDV +HFIR L     + VK+
Sbjct:  429 SHEIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALFVRAVLSFVAPETSGSSIQVLDNQGAMALVQNPLSSGRTKHIDVRFHFIRVLFRSGDISVKF 774          
BLAST of mRNA_H-paniculata_contig42994.10982.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 2.420e-56
Identity = 121/347 (34.87%), Postives = 172/347 (49.57%), Query Frame = 1
Query:    1 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVINVGMTQSKSDPCVFRLEKNGVVGMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWCLGCAFWRDIVSGVVRITQRTFVDTVVKPFDVETESNLLASQQVDLGSRRVDEDLSDKPVHSAVGSLIW*SGMTRPDIASAVRAVARQAYNPTDRHWKAVVKIISYLKRTKDLGLVI------------------------------------------------------------------------------------ITMFEDNQGAMAIAENPTSAGRSKHIDVWYHFIRELIARKVLRVKYKKGEDQ 786
            S +I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W  GCA  RD+ +G +RI+Q  ++D++V+ FDV++ S + A+   DLG +R D+   + PV  AVGS++W S  +RPD++ AVRAVAR A+ P  RHW A+ KI+ YLK T+DLG+                                                                                      I + EDNQGA+A+ +NP S+G  KHIDV +HFIR L       VK+    +Q
Sbjct:  466 SHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYADTEDRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQ 811          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42994.10982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBN2_9PHAE1.930e-6140.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE2.990e-6035.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.040e-5835.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.120e-5835.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.120e-5835.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.130e-5835.45Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JYF4_9PHAE1.080e-5734.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSK5_9PHAE1.110e-5735.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JC10_9PHAE1.090e-5635.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE2.420e-5634.87Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42994contigH-paniculata_contig42994:2..1042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score78.2
Seed ortholog evalue3.8e-12
Seed eggNOG ortholog6334.EFV48939
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,40FC4@6231,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
Exons2
Model size786
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42994.10982.1prot_H-paniculata_contig42994.10982.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42994 32..490 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930306.4391065-UTR-H-paniculata_contig42994:1..311622930306.4391065-UTR-H-paniculata_contig42994:1..31Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42994 2..31 +
1691481234.3674994-UTR-H-paniculata_contig42994:1..311691481234.3674994-UTR-H-paniculata_contig42994:1..31Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42994 2..31 +
1622930306.4707232-UTR-H-paniculata_contig42994:490..6271622930306.4707232-UTR-H-paniculata_contig42994:490..627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42994 491..627 +
1691481234.3873713-UTR-H-paniculata_contig42994:490..6271691481234.3873713-UTR-H-paniculata_contig42994:490..627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42994 491..627 +
1622930306.483478-UTR-H-paniculata_contig42994:882..10421622930306.483478-UTR-H-paniculata_contig42994:882..1042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42994 883..1042 +
1691481234.3957195-UTR-H-paniculata_contig42994:882..10421691481234.3957195-UTR-H-paniculata_contig42994:882..1042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42994 883..1042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930306.45744-CDS-H-paniculata_contig42994:31..4901622930306.45744-CDS-H-paniculata_contig42994:31..490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42994 32..490 +
1691481234.3790038-CDS-H-paniculata_contig42994:31..4901691481234.3790038-CDS-H-paniculata_contig42994:31..490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42994 32..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42994.10982.1

>prot_H-paniculata_contig42994.10982.1 ID=prot_H-paniculata_contig42994.10982.1|Name=mRNA_H-paniculata_contig42994.10982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MYGLKQAGRMWSKRLVEVLVINVGMTQSKSDPCVFRLEKNGVVGMILCVH
VDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWCLGCAFWRDIVSGVVRI
TQRTFVDTVVKPFDVETESNLLASQQVDLGSRRVDEDLSDKPVHSAVGSL
IW*
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mRNA from alignment at H-paniculata_contig42994:2..1042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42994.10982.1 ID=mRNA_H-paniculata_contig42994.10982.1|Name=mRNA_H-paniculata_contig42994.10982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1041bp|location=Sequence derived from alignment at H-paniculata_contig42994:2..1042+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGGTAGGATTGTAAGGCTGAATAAGGCTATGTATGGGCTCAAGCAGGC AGGACGGATGTGGTCAAAGCGCCTTGTAGAAGTACTCGTAATCAACGTCG GCATGACGCAATCCAAGTCTGACCCTTGTGTGTTTAGGCTCGAGAAAAAT GGGGTGGTAGGTATGATTCTGTGTGTTCATGTAGATGATGTCATTGTTGC TGGAAAAAGTGTGAAGTGCGATTCCCTGTTTGCGGCGTTGAGGGCGGAGT TCCAAACCACGAGAGGCGAACTCAAGTGGTGCCTGGGTTGTGCATTTTGG CGTGACATAGTGAGTGGAGTTGTCCGCATCACACAACGGACATTCGTTGA TACTGTCGTTAAACCTTTCGACGTGGAAACCGAGTCTAACCTTCTGGCGT CTCAGCAGGTAGATCTTGGGTCCAGGAGGGTTGATGAGGATTTGTCTGAC AAGCCTGTACACTCGGCTGTGGGGAGTTTGATATGGTGAAGTGGTATGAC GAGACCCGACATAGCCAGTGCAGTACGGGCAGTAGCGAGGCAAGCCTATA ATCCGACAGATAGGCACTGGAAAGCAGTGGTAAAGATCATCTCGTATCTT AAGAGAACGAAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGATATCTTAA TCTGTCAGTGTATGCAGGCACAGATCATGCGGATAAGTCCGACTGGAGGC GTTCAGTGTCAGGCGTGGCAGTGATGTTAGGGGGGAGTGTAGTGAGCGCT ACCAGCACGACACAACACTGTGTGACTTTTTCCACTAGTGAGGCAGAGTA CGTAGCTATGGCGCAAGGGGCTAAGGCAGCACTTTTCACGAGAGCCGTGC TAGAGTTCTTGCAGCCGCAACTTTCTGGTAGGATAATTACGATGTTTGAA GACAACCAGGGGGCAATGGCTATCGCTGAGAATCCGACTAGTGCGGGTAG GAGCAAGCACATAGACGTATGGTATCACTTCATTCGAGAGTTGATTGCGA GGAAAGTATTGAGGGTGAAATACAAGAAGGGTGAGGACCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig42994:2..1042+

>mRNA_H-paniculata_contig42994.10982.1 ID=mRNA_H-paniculata_contig42994.10982.1|Name=mRNA_H-paniculata_contig42994.10982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig42994:2..1042+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGGGCTCAAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGA
AGTACTCGTAATCAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTG
TGTTTAGGCTCGAGAAAAATGGGGTGGTAGGTATGATTCTGTGTGTTCAT
GTAGATGATGTCATTGTTGCTGGAAAAAGTGTGAAGTGCGATTCCCTGTT
TGCGGCGTTGAGGGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGT
GCCTGGGTTGTGCATTTTGGCGTGACATAGTGAGTGGAGTTGTCCGCATC
ACACAACGGACATTCGTTGATACTGTCGTTAAACCTTTCGACGTGGAAAC
CGAGTCTAACCTTCTGGCGTCTCAGCAGGTAGATCTTGGGTCCAGGAGGG
TTGATGAGGATTTGTCTGACAAGCCTGTACACTCGGCTGTGGGGAGTTTG
ATATGGTGAATGTATGGGCTCAAGCAGGCAGGACGGATGTGGTCAAAGCG
CCTTGTAGAAGTACTCGTAATCAACGTCGGCATGACGCAATCCAAGTCTG
ACCCTTGTGTGTTTAGGCTCGAGAAAAATGGGGTGGTAGGTATGATTCTG
TGTGTTCATGTAGATGATGTCATTGTTGCTGGAAAAAGTGTGAAGTGCGA
TTCCCTGTTTGCGGCGTTGAGGGCGGAGTTCCAAACCACGAGAGGCGAAC
TCAAGTGGTGCCTGGGTTGTGCATTTTGGCGTGACATAGTGAGTGGAGTT
GTCCGCATCACACAACGGACATTCGTTGATACTGTCGTTAAACCTTTCGA
CGTGGAAACCGAGTCTAACCTTCTGGCGTCTCAGCAGGTAGATCTTGGGT
CCAGGAGGGTTGATGAGGATTTGTCTGACAAGCCTGTACACTCGGCTGTG
GGGAGTTTGATATGGTGA
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