mRNA_H-paniculata_contig4294.10976.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4294.10976.1
Unique NamemRNA_H-paniculata_contig4294.10976.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4294.10976.1 vs. uniprot
Match: A0A0K8UZ07_BACLA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8UZ07_BACLA)

HSP 1 Score: 109 bits (272), Expect = 2.690e-27
Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 RIKRLRLYQGEEYTGKPFRQFWSEPFIKQKLSAAYILQQNGVAERSLRSVFEMARTKMITTNMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 342
            +IK+LR   G EYT   F +F +E  IK++L+  Y  QQNGVAER  R++ EMAR+ ++   +    W EAV +AVY  NRAPT+     TPYE W+ + P + HLRVFG  A+
Sbjct:   31 KIKKLRSDNGTEYTNNKFSEFLNECGIKRQLTVPYTPQQNGVAERVNRTIVEMARSLLVHAELEEELWGEAVHTAVYIRNRAPTKLLKNSTPYEVWYNKKPSVKHLRVFGARAF 144          
BLAST of mRNA_H-paniculata_contig4294.10976.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 113 bits (283), Expect = 6.540e-27
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 IKRLRLYQGEEYTGKPFRQFWSEPFIKQKLSAAYILQQNGVAERSLRSVFEMARTKMITTNMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 342
            +KRLR   G EYT   F++F  +  I+ +L+  Y  QQNGV+ER  R+V EMAR  +    +    W EAV ++VY LN  PT+   G TP+E WHG TP ++HL+VFGC+ Y
Sbjct:  518 VKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCY 630          
BLAST of mRNA_H-paniculata_contig4294.10976.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 107 bits (267), Expect = 1.800e-26
Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 RIKRLRLYQGEEYTGKPFRQFWSEPFIKQKLSAAYILQQNGVAERSLRSVFEMARTKMITTNMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 342
            +IK LR  +G E+    F  F  E  ++ +L+ AY  QQNGV ER  R+V EMAR+ +I  ++  + W EAV +AVY LNR PT+     TP E W G+ P +DH R+FGC+ Y
Sbjct:   52 KIKILRSDRGGEFNSCQFEDFCKEEGLEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCY 165          
BLAST of mRNA_H-paniculata_contig4294.10976.1 vs. uniprot
Match: UPI001025AD12 (DDE-type integrase/transposase/recombinase n=1 Tax=Enterobacter cloacae complex sp. CH23B TaxID=2511986 RepID=UPI001025AD12)

HSP 1 Score: 106 bits (264), Expect = 4.830e-26
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    1 RIKRLRLYQGEEYTGKPFRQFWSEPFIKQKLSAAYILQQNGVAERSLRSVFEMARTKMITTNMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 342
            ++K L    G EY  K F+ F     IK++L+A Y   QNGVAER  RS+ EMAR  + +  + H  W EA+  A Y LNR PT+     TPYE WH   P ++H+RVFGC+AY
Sbjct:   35 KLKCLCTDNGGEYVSKAFQDFCESKGIKRELTAPYNPPQNGVAERKNRSLTEMARCMVKSQALPHSFWLEAIMCATYVLNRCPTKALQPITPYEAWHDRKPSIEHMRVFGCLAY 148          
BLAST of mRNA_H-paniculata_contig4294.10976.1 vs. uniprot
Match: A0A811QND8_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811QND8_9POAL)

HSP 1 Score: 106 bits (265), Expect = 1.850e-25
Identity = 52/114 (45.61%), Postives = 69/114 (60.53%), Query Frame = 1
Query:    1 RIKRLRLYQGEEYTGKPFRQFWSEPFIKQKLSAAYILQQNGVAERSLRSVFEMARTKMITTNMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 342
            ++K LR Y+G E+T  PF  F SE  IK   +  Y  QQNGV E   ++V EMAR  + T  +    W EAVC+AVY LNR+ T+  N  TP E WHG  P++ HL+ F C+A+
Sbjct:  102 KLKALRTYRGGEFTSNPFSIFCSEGGIKHYTTTRYSPQQNGVVECRNQTVVEMARCMLKTMKVPSVFWGEAVCTAVYVLNRSSTKSLNSKTPLEAWHGRKPRVSHLKTFRCVAH 215          
BLAST of mRNA_H-paniculata_contig4294.10976.1 vs. uniprot
Match: A0A0A1WGJ2_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WGJ2_ZEUCU)

HSP 1 Score: 109 bits (272), Expect = 1.950e-25
Identity = 54/113 (47.79%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 IKRLRLYQGEEYTGKPFRQFWSEPFIKQKLSAAYILQQNGVAERSLRSVFEMARTKMITTNMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 342
            IK+LR   G EYT   F +F  E  IK++L+  Y  QQNGVAER  R++ EMAR+ ++  N+    W EAV +AVY  NRAPT+     TPYE W+ + P + HLRVFG  A+
Sbjct:  526 IKKLRSDNGTEYTNNKFSEFLKECGIKRQLTVPYTPQQNGVAERVNRTIVEMARSLLVHANLKEELWGEAVHTAVYIRNRAPTKLLKHTTPYEVWYNKKPSVKHLRVFGARAF 638          
BLAST of mRNA_H-paniculata_contig4294.10976.1 vs. uniprot
Match: A0A0A1X768_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1X768_ZEUCU)

HSP 1 Score: 109 bits (272), Expect = 2.000e-25
Identity = 54/113 (47.79%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 IKRLRLYQGEEYTGKPFRQFWSEPFIKQKLSAAYILQQNGVAERSLRSVFEMARTKMITTNMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 342
            IK+LR   G EYT   F +F  E  IK++L+  Y  QQNGVAER  R++ EMAR+ ++  N+    W EAV +AVY  NRAPT+     TPYE W+ + P + HLRVFG  A+
Sbjct:  526 IKKLRSDNGTEYTNNKFSEFLKECGIKRQLTVPYTPQQNGVAERVNRTIVEMARSLLVHANLKEELWGEAVHTAVYIRNRAPTKLLKHTTPYEVWYNKKPSVKHLRVFGARAF 638          
BLAST of mRNA_H-paniculata_contig4294.10976.1 vs. uniprot
Match: A0A537QRN8_9PROT (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QRN8_9PROT)

HSP 1 Score: 108 bits (271), Expect = 2.720e-25
Identity = 56/115 (48.70%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    1 RIKRLRLYQGE-EYTGKPFRQFWSEPFIKQKLSAAYILQQNGVAERSLRSVFEMARTKMITTNMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 342
            +I+R R   G+ EY  K FR   S   I  + SA Y   QNGV+ER +RS+ E AR  +   ++G R W EAV +AVY LNR+PTR   G TPYE W+G  P L HLR FGC A+
Sbjct:  589 KIQRFRSDNGKGEYDNKAFRDILSSGGISFEPSAPYTQNQNGVSERKIRSIVEKARCMLHDASLGARFWAEAVSTAVYLLNRSPTRALEGQTPYEAWYGSRPSLHHLRRFGCNAF 703          
BLAST of mRNA_H-paniculata_contig4294.10976.1 vs. uniprot
Match: A0A0K8U1D4_BACLA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8U1D4_BACLA)

HSP 1 Score: 107 bits (268), Expect = 2.980e-25
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 RIKRLRLYQGEEYTGKPFRQFWSEPFIKQKLSAAYILQQNGVAERSLRSVFEMARTKMITTNMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMA 339
            ++K LR   G E+    F  F  E  I ++L+  Y  QQNGVAER  R++ EMAR+ ++++ +    W EAV +A Y  NRAPTR  +  TPYE WHG  P + HLRVFGC+A
Sbjct:  170 KLKVLRSDNGTEFVNNSFDNFLKENGIMRQLTVPYTPQQNGVAERFNRTLVEMARSMLVSSGVNETLWAEAVYTAAYLRNRAPTRALDSMTPYEAWHGYKPMVGHLRVFGCVA 282          
BLAST of mRNA_H-paniculata_contig4294.10976.1 vs. uniprot
Match: A0A453NGZ9_AEGTS (Integrase catalytic domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453NGZ9_AEGTS)

HSP 1 Score: 108 bits (270), Expect = 3.430e-25
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 1
Query:    1 RIKRLRLYQGEEYTGKPFRQFWSEPFIKQKLSAAYILQQNGVAERSLRSVFEMARTKMITTNMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGETPKLDHLRVFGCMAY 342
            ++K LR  +G E+  + F +F     IK+ L+A Y  QQNGV ER  ++V  MAR+ M +  M  + W EAV +AVY LNRAPT+   G TPYE W+G  P +DHLR FGC+A+
Sbjct:  304 KLKALRTDRGGEFKSREFTEFCEAHGIKRYLTAPYSPQQNGVVERRNQTVVAMARSMMKSKGMPGKFWGEAVNTAVYLLNRAPTKSVVGMTPYEAWYGHKPAVDHLRTFGCIAH 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4294.10976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0K8UZ07_BACLA2.690e-2746.49Retrovirus-related Pol polyprotein from transposon... [more]
A0A151T355_CAJCA6.540e-2746.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0WJT9_9ASPA1.800e-2644.74Retrovirus-related Pol polyprotein from transposon... [more]
UPI001025AD124.830e-2645.61DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A811QND8_9POAL1.850e-2545.61Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
A0A0A1WGJ2_ZEUCU1.950e-2547.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A1X768_ZEUCU2.000e-2547.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A537QRN8_9PROT2.720e-2548.70DDE-type integrase/transposase/recombinase (Fragme... [more]
A0A0K8U1D4_BACLA2.980e-2546.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A453NGZ9_AEGTS3.430e-2547.37Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4294contigH-paniculata_contig4294:9298..9639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score110.9
Seed ortholog evalue3.9e-22
Seed eggNOG ortholog15368.BRADI1G43550.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930305.761955-CDS-H-paniculata_contig4294:9297..96391622930305.761955-CDS-H-paniculata_contig4294:9297..9639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4294 9298..9639 -
1691481234.128897-CDS-H-paniculata_contig4294:9297..96391691481234.128897-CDS-H-paniculata_contig4294:9297..9639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4294 9298..9639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4294.10976.1prot_H-paniculata_contig4294.10976.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4294 9298..9639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4294.10976.1

>prot_H-paniculata_contig4294.10976.1 ID=prot_H-paniculata_contig4294.10976.1|Name=mRNA_H-paniculata_contig4294.10976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
RIKRLRLYQGEEYTGKPFRQFWSEPFIKQKLSAAYILQQNGVAERSLRSV
FEMARTKMITTNMGHRCWEEAVCSAVYCLNRAPTRPHNGGTPYEKWHGET
PKLDHLRVFGCMAY
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mRNA from alignment at H-paniculata_contig4294:9298..9639-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4294.10976.1 ID=mRNA_H-paniculata_contig4294.10976.1|Name=mRNA_H-paniculata_contig4294.10976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig4294:9298..9639- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATTAAGCGCCTTCGGTTGTATCAGGGAGAAGAATATACTGGGAAACC TTTTAGGCAATTCTGGTCCGAACCTTTCATCAAGCAGAAGTTGTCTGCCG CCTATATATTGCAACAAAACGGTGTGGCGGAGCGCAGCCTGCGCAGCGTT TTCGAGATGGCAAGAACCAAGATGATCACCACCAACATGGGTCATCGATG CTGGGAGGAAGCTGTGTGCTCGGCAGTGTACTGCCTAAATCGTGCCCCGA CGCGACCGCACAACGGAGGAACACCGTACGAAAAATGGCACGGCGAGACA CCGAAGTTAGACCACCTTCGCGTCTTCGGCTGCATGGCGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4294:9298..9639-

>mRNA_H-paniculata_contig4294.10976.1 ID=mRNA_H-paniculata_contig4294.10976.1|Name=mRNA_H-paniculata_contig4294.10976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig4294:9298..9639- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATTAAGCGCCTTCGGTTGTATCAGGGAGAAGAATATACTGGGAAACC
TTTTAGGCAATTCTGGTCCGAACCTTTCATCAAGCAGAAGTTGTCTGCCG
CCTATATATTGCAACAAAACGGTGTGGCGGAGCGCAGCCTGCGCAGCGTT
TTCGAGATGGCAAGAACCAAGATGATCACCACCAACATGGGTCATCGATG
CTGGGAGGAAGCTGTGTGCTCGGCAGTGTACTGCCTAAATCGTGCCCCGA
CGCGACCGCACAACGGAGGAACACCGTACGAAAAATGGCACGGCGAGACA
CCGAAGTTAGACCACCTTCGCGTCTTCGGCTGCATGGCGTATCGGATTAA
GCGCCTTCGGTTGTATCAGGGAGAAGAATATACTGGGAAACCTTTTAGGC
AATTCTGGTCCGAACCTTTCATCAAGCAGAAGTTGTCTGCCGCCTATATA
TTGCAACAAAACGGTGTGGCGGAGCGCAGCCTGCGCAGCGTTTTCGAGAT
GGCAAGAACCAAGATGATCACCACCAACATGGGTCATCGATGCTGGGAGG
AAGCTGTGTGCTCGGCAGTGTACTGCCTAAATCGTGCCCCGACGCGACCG
CACAACGGAGGAACACCGTACGAAAAATGGCACGGCGAGACACCGAAGTT
AGACCACCTTCGCGTCTTCGGCTGCATGGCGTAT
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