mRNA_H-paniculata_contig42921.10974.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42921.10974.1
Unique NamemRNA_H-paniculata_contig42921.10974.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42921.10974.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.930e-16
Identity = 100/249 (40.16%), Postives = 135/249 (54.22%), Query Frame = 1 
Query:   28 VSKLCSTAQTLLKVLAEIMHKKGLGSADTVPERINLVLDSRFKSCCSAVCLNGGDALQETVCNEIKEQFATFDWDVPQISSAKSSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRMQRLRAKFSQKVLRRENDD--------------------------ISGKVETP-EEACLREFAEYMKE-ATPTFYVLNYWKPRATDGLDA-SGRVVMPARWPHVGLTARLYAGIDTTSCQAERNF 687
            V++L   AQ LL+ +AE M + GLG A    E ++++LD RFK CC++ C++GG AL+      +  Q   F          +   +   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SR+ ++R     +                                  + G+V+    E    E  EY+ E A+    +L+YW+   TD LD+ +G VV+ ARWPH+ L ARLYAGID+TS Q ER+F
Sbjct:  621 VAELTPEAQALLEAVAEGMEESGLGRAREDTEAVSMLLDPRFKQCCASTCVDGGSALKLRALKAVSSQLRKF----------RDPASEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRLDKMRQAQKMEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGEVDNRLSEDARAELEEYLLEPASKRHELLSYWRLHGTDTLDSGTGEVVLAARWPHLALVARLYAGIDSTSRQGERHF 859
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BLAST of mRNA_H-paniculata_contig42921.10974.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.070e-13
Identity = 70/231 (30.30%), Postives = 101/231 (43.72%), Query Frame = 1 
Query:   28 VSKLCSTAQTLLKVLAEIMHKKGLGSADTVPERINLVLDSRFKSCCSAVCLNGGDALQETVCNEIKEQFATFDWDVPQISSAKSSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRMQRLRAKFSQKVLRRENDDISGKVETPEEACLR------EFAEYMKEATPT----FYVLNYWKPRATDGLDAS-GRVVMPARWPHVGLTARLYAGIDTTSCQAERNF 687
            V  L + AQ +L+VL E M +KG+GSA    ER++ ++D R KS  S    NG   L++   +++K   A FD     +  A ++ A                                   SR++  RA  ++        D +G +E    +  R      E   Y+ E        F VL YW  R TD + A+ G+V  PA  P++   ARLY GI+ TSCQAERNF
Sbjct:  567 VMDLTAEAQCVLEVLQEKMREKGMGSAQVAVERLSALMDPRRKSLDSDQLENGSADLRKKAEDDLKAVIAKFD-----VGPATAAPAPAPVMNLDPVEPAPKKKKL----------------SRLEERRA--ARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNF 774
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BLAST of mRNA_H-paniculata_contig42921.10974.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.620e-13
Identity = 69/231 (29.87%), Postives = 101/231 (43.72%), Query Frame = 1 
Query:   28 VSKLCSTAQTLLKVLAEIMHKKGLGSADTVPERINLVLDSRFKSCCSAVCLNGGDALQETVCNEIKEQFATFDWDVPQISSAKSSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRMQRLRAKFSQKVLRRENDDISGKVETPEEACLR------EFAEYMKEATPT----FYVLNYWKPRATDGLDAS-GRVVMPARWPHVGLTARLYAGIDTTSCQAERNF 687
            V  L + AQ +L+VL E M +KG+GSA    ER++ ++D R +S  S    NG   L++   +++K   A FD     +  A ++ A                                   SR++  RA  ++        D +G +E    +  R      E   Y+ E        F VL YW  R TD + A+ G+V  PA  P++   ARLY GI+ TSCQAERNF
Sbjct:  372 VMDLTAEAQCVLEVLQEKMREKGVGSAQVAVERLSALMDPRLRSLDSDQLENGSADLRKKAEDDLKAVIAKFD-----VGPATAAPAPAPVMNLDRVEPAPKKKKL----------------SRLEERRA--ARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNF 579
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BLAST of mRNA_H-paniculata_contig42921.10974.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.790e-12
Identity = 64/234 (27.35%), Postives = 98/234 (41.88%), Query Frame = 1 
Query:   19 EDPVSKLCSTAQTLLKVLAEIMHKKGLGSADTVPERINLVLDSRFKSCCSAVCLNGGDALQETVCNEIKEQFATFDWDVPQISSAKSSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRMQRLRAKFSQKVLRRENDDISGKVETPEEACLR------EFAEYMKEATPT----FYVLNYWKPRATDGL-DASGRVVMPARWPHVGLTARLYAGIDTTSCQAERNF 687
            E  V +L S AQ +L+VL ++M +K +G A    ER++ ++D R KS   A   NG   L++    ++K   A FD    + + A +                                       ++ RL  + + +V    +   SG V+    A  R      E   Y+ E        F VL +W  R TD +   +G V  PA  P++   ARL+ GI+ +SCQAERNF
Sbjct:  553 EMQVLELSSAAQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLKAVIAQFDVQPSEPAPAPAP------------------------VLNVDPVEPASKRKKLSRLEERRAARVAAASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNF 762
[Close]
BLAST of mRNA_H-paniculata_contig42921.10974.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.370e-5
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:  496 REFAEYMKEATPT----FYVLNYWKPRATDGL-DASGRVVMPARWPHVGLTARLYAGIDTTSCQAERNF 687
            RE   Y+ E        F VL +W  R TD +   +G V  PA  P++   ARL+ GI+ +SCQAERNF
Sbjct:  129 REVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNF 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42921.10974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G031_ECTSI1.930e-1640.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JGG8_9PHAE2.070e-1330.30Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JTB8_9PHAE2.620e-1329.87Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE5.790e-1227.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJT6_9PHAE1.370e-542.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42921contigH-paniculata_contig42921:502..1204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size687
Cds size687
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930305.4246728-CDS-H-paniculata_contig42921:501..10251622930305.4246728-CDS-H-paniculata_contig42921:501..1025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42921 502..1025 +
1691481233.9825306-CDS-H-paniculata_contig42921:501..10251691481233.9825306-CDS-H-paniculata_contig42921:501..1025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42921 502..1025 +
1622930305.470749-CDS-H-paniculata_contig42921:1041..12041622930305.470749-CDS-H-paniculata_contig42921:1041..1204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42921 1042..1204 +
1691481233.9942636-CDS-H-paniculata_contig42921:1041..12041691481233.9942636-CDS-H-paniculata_contig42921:1041..1204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42921 1042..1204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42921.10974.1prot_H-paniculata_contig42921.10974.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42921 502..1204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42921.10974.1

>prot_H-paniculata_contig42921.10974.1 ID=prot_H-paniculata_contig42921.10974.1|Name=mRNA_H-paniculata_contig42921.10974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=229bp
MPVAKTEDPVSKLCSTAQTLLKVLAEIMHKKGLGSADTVPERINLVLDSR
FKSCCSAVCLNGGDALQETVCNEIKEQFATFDWDVPQISSAKSSGAGGAG
AAGSAPSPAPTLPPAPAPLPGPPAPAPTPAPSRMQRLRAKFSQKVLRREN
DDISGKVETPEEACLREFAEYMKEATPTFYVLNYWKPRATDGLDASGRVV
MPARWPHVGLTARLYAGIDTTSCQAERNF
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mRNA from alignment at H-paniculata_contig42921:502..1204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42921.10974.1 ID=mRNA_H-paniculata_contig42921.10974.1|Name=mRNA_H-paniculata_contig42921.10974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=703bp|location=Sequence derived from alignment at H-paniculata_contig42921:502..1204+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGTTGCCAAAACGGAAGACCCCGTCAGCAAGCTTTGCTCAACGGC
GCAGACATTGCTGAAGGTTCTGGCGGAGATCATGCACAAAAAGGGTCTCG
GGTCTGCAGACACGGTGCCCGAGAGGATAAACTTGGTGCTTGATTCTCGC
TTCAAGTCCTGTTGTTCCGCCGTGTGCTTGAACGGGGGCGATGCTCTTCA
GGAGACGGTGTGCAATGAGATCAAGGAGCAATTCGCGACTTTCGATTGGG
ACGTCCCTCAGATCTCTTCGGCAAAGAGCTCCGGTGCGGGCGGTGCGGGT
GCAGCGGGATCGGCGCCGTCACCAGCGCCGACGCTTCCACCAGCACCTGC
TCCCTTACCGGGACCACCGGCACCGGCGCCGACTCCCGCGCCTAGTAGGA
TGCAGAGGCTCAGAGCGAAATTCAGCCAAAAGGTACTTCGGCGGGAGAAC
GACGACATCAGCGGGAAGGTCGAGACGCCGGAAGAAGCCTGTCTGCGGGA
GTTTGCCGAGTACATGAAGGAGGCGTCTCCCCCCGACGAGGACCCCAACT
TTTTACGTCCTCAACTACTGGAAGCCGCGGGCTACTGATGGGCTCGACGC
GTCGGGGAGAGTTGTCATGCCTGCCCGTTGGCCGCATGTCGGCTTGACAG
CGCGATTGTACGCGGGTATCGACACCACCAGTTGTCAAGCAGAGAGGAAC
TTC
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Coding sequence (CDS) from alignment at H-paniculata_contig42921:502..1204+

>mRNA_H-paniculata_contig42921.10974.1 ID=mRNA_H-paniculata_contig42921.10974.1|Name=mRNA_H-paniculata_contig42921.10974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig42921:502..1204+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGTTGCCAAAACGGAAGACCCCGTCAGCAAGCTTTGCTCAACGGC
GCAGACATTGCTGAAGGTTCTGGCGGAGATCATGCACAAAAAGGGTCTCG
GGTCTGCAGACACGGTGCCCGAGAGGATAAACTTGGTGCTTGATTCTCGC
TTCAAGTCCTGTTGTTCCGCCGTGTGCTTGAACGGGGGCGATGCTCTTCA
GGAGACGGTGTGCAATGAGATCAAGGAGCAATTCGCGACTTTCGATTGGG
ACGTCCCTCAGATCTCTTCGGCAAAGAGCTCCGGTGCGGGCGGTGCGGGT
GCAGCGGGATCGGCGCCGTCACCAGCGCCGACGCTTCCACCAGCACCTGC
TCCCTTACCGGGACCACCGGCACCGGCGCCGACTCCCGCGCCTAGTAGGA
TGCAGAGGCTCAGAGCGAAATTCAGCCAAAAGGTACTTCGGCGGGAGAAC
GACGACATCAGCGGGAAGGTCGAGACGCCGGAAGAAGCCTGTCTGCGGGA
GTTTGCCGAGTACATGAAGGAGGCATGCCCGTTGCCAAAACGGAAGACCC
CGTCAGCAAGCTTTGCTCAACGGCGCAGACATTGCTGAAGGTTCTGGCGG
AGATCATGCACAAAAAGGGTCTCGGGTCTGCAGACACGGTGCCCGAGAGG
ATAAACTTGGTGCTTGATTCTCGCTTCAAGTCCTGTTGTTCCGCCGTGTG
CTTGAACGGGGGCGATGCTCTTCAGGAGACGGTGTGCAATGAGATCAAGG
AGCAATTCGCGACTTTCGATTGGGACGTCCCTCAGATCTCTTCGGCAAAG
AGCTCCGGTGCGGGCGGTGCGGGTGCAGCGGGATCGGCGCCGTCACCAGC
GCCGACGCTTCCACCAGCACCTGCTCCCTTACCGGGACCACCGGCACCGG
CGCCGACTCCCGCGCCTAGTAGGATGCAGAGGCTCAGAGCGAAATTCAGC
CAAAAGGTACTTCGGCGGGAGAACGACGACATCAGCGGGAAGGTCGAGAC
GCCGGAAGAAGCCTGTCTGCGGGAGTTTGCCGAGTACATGAAGGAGGCGA
CCCCAACTTTTTACGTCCTCAACTACTGGAAGCCGCGGGCTACTGATGGG
CTCGACGCGTCGGGGAGAGTTGTCATGCCTGCCCGTTGGCCGCATGTCGG
CTTGACAGCGCGATTGTACGCGGGTATCGACACCACCAGTTGTCAAGCAG
AGAGGAACTTCGACCCCAACTTTTTACGTCCTCAACTACTGGAAGCCGCG
GGCTACTGATGGGCTCGACGCGTCGGGGAGAGTTGTCATGCCTGCCCGTT
GGCCGCATGTCGGCTTGACAGCGCGATTGTACGCGGGTATCGACACCACC
AGTTGTCAAGCAGAGAGGAACTTC
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