mRNA_H-paniculata_contig42899.10963.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42899.10963.1
Unique NamemRNA_H-paniculata_contig42899.10963.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42899.10963.1 vs. uniprot
Match: UPI001C79D330 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C79D330)

HSP 1 Score: 53.5 bits (127), Expect = 5.990e-6
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    4 EMEIWICDNGAMNHTTHNSDFLYNYQECD-GHVRLADGNRLQIEGVGMLFLQFRFNSEVVLMKLTHVPFVSLLSHHLPSLGK 246
            ++E W+ D+GA  HTT + + + NY   D G V LADG  L+IEG+G + +     S  +L K+ HVP    L  +L S+G+
Sbjct:  418 QIESWVLDSGASFHTTAHREIMQNYVTGDFGKVYLADGEALEIEGMGDVPINLPNGSAWLLQKVRHVP---KLMRNLISVGQ 496
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42899.10963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C79D3305.990e-639.02Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42899contigH-paniculata_contig42899:487..807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930303.7043588-CDS-H-paniculata_contig42899:486..8011622930303.7043588-CDS-H-paniculata_contig42899:486..801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42899 487..801 -
1691481233.1975336-CDS-H-paniculata_contig42899:486..8011691481233.1975336-CDS-H-paniculata_contig42899:486..801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42899 487..801 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930303.725929-UTR-H-paniculata_contig42899:801..8071622930303.725929-UTR-H-paniculata_contig42899:801..807Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42899 802..807 -
1691481233.208015-UTR-H-paniculata_contig42899:801..8071691481233.208015-UTR-H-paniculata_contig42899:801..807Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42899 802..807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42899.10963.1prot_H-paniculata_contig42899.10963.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42899 487..801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42899.10963.1

>prot_H-paniculata_contig42899.10963.1 ID=prot_H-paniculata_contig42899.10963.1|Name=mRNA_H-paniculata_contig42899.10963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MEIWICDNGAMNHTTHNSDFLYNYQECDGHVRLADGNRLQIEGVGMLFLQ
FRFNSEVVLMKLTHVPFVSLLSHHLPSLGKFADFGPEYRCSREGLRINLK
TGRVL
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mRNA from alignment at H-paniculata_contig42899:487..807-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42899.10963.1 ID=mRNA_H-paniculata_contig42899.10963.1|Name=mRNA_H-paniculata_contig42899.10963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig42899:487..807- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGATGGAGATCTGGATTTGTGATAATGGTGCAATGAATCACACGAC
CCATAATTCAGATTTTCTTTATAATTACCAGGAATGTGATGGGCATGTAC
GCCTTGCAGATGGTAACCGTCTCCAGATCGAAGGAGTTGGCATGCTGTTC
CTTCAATTTCGATTTAACTCCGAGGTTGTTTTGATGAAGTTAACTCACGT
TCCATTCGTATCACTCCTCAGTCATCATCTCCCATCTCTCGGAAAATTCG
CGGACTTTGGTCCTGAATATAGGTGTTCGCGCGAAGGGCTCAGAATTAAC
CTTAAAACAGGGAGAGTTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig42899:487..807-

>mRNA_H-paniculata_contig42899.10963.1 ID=mRNA_H-paniculata_contig42899.10963.1|Name=mRNA_H-paniculata_contig42899.10963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig42899:487..807- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATTTGTGATAATGGTGCAATGAATCACACGACCCATAA
TTCAGATTTTCTTTATAATTACCAGGAATGTGATGGGCATGTACGCCTTG
CAGATGGTAACCGTCTCCAGATCGAAGGAGTTGGCATGCTGTTCCTTCAA
TTTCGATTTAACTCCGAGGTTGTTTTGATGAAGTTAACTCACGTTCCATT
CGTATCACTCCTCAGTCATCATCTCCCATCTCTCGGAAAATTCGCGGACT
TTGGTCCTGAATATAGGTGTTCGCGCGAAGGGCTCAGAATTAACCTTAAA
ACAGGGAGAGTTCTGATGGAGATCTGGATTTGTGATAATGGTGCAATGAA
TCACACGACCCATAATTCAGATTTTCTTTATAATTACCAGGAATGTGATG
GGCATGTACGCCTTGCAGATGGTAACCGTCTCCAGATCGAAGGAGTTGGC
ATGCTGTTCCTTCAATTTCGATTTAACTCCGAGGTTGTTTTGATGAAGTT
AACTCACGTTCCATTCGTATCACTCCTCAGTCATCATCTCCCATCTCTCG
GAAAATTCGCGGACTTTGGTCCTGAATATAGGTGTTCGCGCGAAGGGCTC
AGAATTAACCTTAAAACAGGGAGAGTTCTG
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