mRNA_H-paniculata_contig42844.10957.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42844.10957.1
Unique NamemRNA_H-paniculata_contig42844.10957.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42844.10957.1 vs. uniprot
Match: A0A4D8ZGL2_SALSN (Cis-zeatin O-glucosyltransferase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZGL2_SALSN)

HSP 1 Score: 57.4 bits (137), Expect = 5.460e-7
Identity = 37/127 (29.13%), Postives = 69/127 (54.33%), Query Frame = 1
Query:    4 EIWICDNGATKHMTHDSDFLFDYQQCNG-HVRLADGNRLPIEGVGMLSLQFRFDSEVVLMKLTQVAFVPLLSHHLLSFGKFVDFGNEYRRSREGLRINLKTGRVLSAERFGSLDVMRGSRVCPEDSA 381
            ++WI D+GA+ H+    ++   Y+Q +G +V +A+ +   + G+G + ++     + V   L  V  VP ++ +L+S   F   G  ++     +RI   +  VL+A ++G+L V+RGS V   DSA
Sbjct:  120 DVWILDSGASYHLFPHMEYFTTYEQIDGGNVTMANSDVCKVVGIGSIRIRTH---DGVFCTLNDVRHVPQMTKNLISLNTFDSKGFSFKGESGVMRILKGSKMVLTALKWGTLYVLRGSIVA--DSA 241          
BLAST of mRNA_H-paniculata_contig42844.10957.1 vs. uniprot
Match: A0A2N9GP30_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GP30_FAGSY)

HSP 1 Score: 57.0 bits (136), Expect = 8.050e-7
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   10 WICDNGATKHMT---HDSDFLFDYQQCNGHVRLADGNRLPIEGVGMLSLQFRFDSEVVLMKLTQVAFVPLLSHHLLSFGKFVDFGNEYRRSREGLRI-NLKTGRVLS-AERFGSLDVM 348
            WI D+GA+ HMT   H  + +  Y   +G + +A+G  LPIE +G LS+     ++   + LT V +VP LS +L+S G+ V+       S  G  I +L TG+V+    R G L V+
Sbjct:  907 WIFDSGASNHMTGNLHALEKVVPYHH-HGKITIANGQALPIEKIGSLSIPL---TDSTSLSLTDVLYVPTLSANLISVGQLVNKNCLVSFSPLGCLIQDLHTGKVIGRGHRKGELFVL 1020          
BLAST of mRNA_H-paniculata_contig42844.10957.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM)

HSP 1 Score: 56.2 bits (134), Expect = 1.360e-6
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query:   13 ICDNGATKHMTHDSDFLFDYQQCNGHVRLADGNRLPIEGVGMLSLQFRFDSEVVLMKLTQVAFVPLLSHHLLSFGKF-VDFGNEYRRSREGLRI-NLKTGRVL 315
            I D+GA+ HM  D   + D ++  G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS  K  +D G +     + +   +LKTGRV+
Sbjct:  308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401          
BLAST of mRNA_H-paniculata_contig42844.10957.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.920e-6
Identity = 34/119 (28.57%), Postives = 63/119 (52.94%), Query Frame = 1
Query:    4 EIWICDNGATKHMTHDSDFLFDYQQCNGHVRLADGNRLPIEGVGMLSLQFRFDSEVVLMKLTQVAFVPLLSHHLLSFGKFVDFG-----NEYRRSREGLRINLKTGRVLSAERFGSLDV 345
            +IWI DNG+++H+ +D+ +L D ++C+      +G  L I   G ++L+        +++L+ V F   + H+L+S+G+    G        RRS+    +N+    VL+ E  GS +V
Sbjct:  292 DIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVVRLSNVYFAKNVVHNLISYGQLDKVGYPLAHRAERRSKPLSEVNMA---VLNEEVNGSDEV 407          
BLAST of mRNA_H-paniculata_contig42844.10957.1 vs. uniprot
Match: UPI0006AB1BB2 (uncharacterized protein LOC106350608 n=2 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB1BB2)

HSP 1 Score: 55.5 bits (132), Expect = 2.690e-6
Identity = 30/84 (35.71%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   13 ICDNGATKHMTHDSDFLFDYQQCNGHVRLADGNRLPIEGVGMLSLQFRFDSEVVLMKLTQVAFVPLLSHHLLSFGKFVDFGNEY 264
            + D+GA+ HM  DS  + D +  NGHV +A+G+++PI G+G L L   FD +      ++  ++P  + +LLS  K+   G EY
Sbjct:  394 VVDSGASHHMISDSSLIRDIEPTNGHVMIANGDKIPIRGIGKLKL---FDED------SKAFYMPDFTSNLLSVKKYN--GGEY 466          
BLAST of mRNA_H-paniculata_contig42844.10957.1 vs. uniprot
Match: UPI00142D92C5 (uncharacterized protein LOC117131646 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D92C5)

HSP 1 Score: 54.7 bits (130), Expect = 4.460e-6
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   13 ICDNGATKHMTHDSDFLFDYQQCNGHVRLADGNRLPIEGVGMLSLQFRFDSEVVLMKLTQVAFVPLLSHHLLSFGKF-VDFGNEYRRSREGLRI-NLKTGRVL 315
            I D GA+ HM  D   + D ++  G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS  K  +D G +     + +   +LKTGRV+
Sbjct:  264 IVDFGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 357          
BLAST of mRNA_H-paniculata_contig42844.10957.1 vs. uniprot
Match: UPI000BBF2125 (uncharacterized protein LOC111214429 n=3 Tax=Brassica napus TaxID=3708 RepID=UPI000BBF2125)

HSP 1 Score: 54.7 bits (130), Expect = 4.600e-6
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   13 ICDNGATKHMTHDSDFLFDYQQCNGHVRLADGNRLPIEGVGMLSLQFRFDSEVVLMKLTQVAFVPLLSHHLLSFGKFVD 249
            I D+GA+ HM  D++ + D +  NG V +A+G+++PI+G+G L L   FD      K T+  ++P  + +LLS  K+V+
Sbjct:  399 IIDSGASHHMISDTNLIKDIEPTNGCVMIANGDKIPIKGIGNLKL---FD------KNTRAFYIPEFTSNLLSVKKYVE 468          
BLAST of mRNA_H-paniculata_contig42844.10957.1 vs. uniprot
Match: UPI0006A74443 (uncharacterized protein LOC106321044 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A74443)

HSP 1 Score: 54.7 bits (130), Expect = 4.840e-6
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 1
Query:   13 ICDNGATKHMTHDSDFLFDYQQCNGHVRLADGNRLPIEGVGMLSLQFRFDSEVVLMKLTQVAFVPLLSHHLLS-------FGKFVDFGNEY 264
            I D+GA+ HM  DS  + D +  NGHV +A+G+++PI G+G L L   FD E      ++  ++P  + +LLS        GK V  G+ Y
Sbjct:  394 IVDSGASHHMISDSSLIRDIEPTNGHVMIANGDKIPIRGIGKLKL---FDKE------SKAFYMPDFTSNLLSDIESSQLIGKGVTKGDLY 475          
BLAST of mRNA_H-paniculata_contig42844.10957.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 54.3 bits (129), Expect = 6.320e-6
Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    4 EIWICDNGATKHMTHDSDFLFDYQQCNG-HVRLADGNRLPIEGVGMLSLQFRFDSEVVLMKLTQVAFVPLLSHHLLSFG 237
            ++WI D+GA++HMTH S+++ + Q     HV L DG +  + G G + +Q   D + +   L  V +VP L+ +L S G
Sbjct:  286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364          
BLAST of mRNA_H-paniculata_contig42844.10957.1 vs. uniprot
Match: A0A1J3DSB6_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DSB6_NOCCA)

HSP 1 Score: 51.6 bits (122), Expect = 6.880e-6
Identity = 28/76 (36.84%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   13 ICDNGATKHMTHDSDFLFDYQQCNGHVRLADGNRLPIEGVGMLSLQFRFDSEVVLMKLTQVAFVPLLSHHLLSFGK 240
            I D+GA+ HM  D + + D +   GHV +A+G+++PI+G+G L L   FD E      +Q  ++P  + +LLS  K
Sbjct:   33 IVDSGASHHMISDLNLIKDIKPALGHVSIANGDQIPIKGIGNLKL---FDKE------SQAFYMPSFTSNLLSVKK 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42844.10957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D8ZGL2_SALSN5.460e-729.13Cis-zeatin O-glucosyltransferase n=1 Tax=Salvia sp... [more]
A0A2N9GP30_FAGSY8.050e-735.59Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A8D9D973_BRACM1.360e-634.95(field mustard) hypothetical protein (Fragment) n=... [more]
A0A225WMA1_9STRA1.920e-628.57CCHC-type domain-containing protein (Fragment) n=1... [more]
UPI0006AB1BB22.690e-635.71uncharacterized protein LOC106350608 n=2 Tax=Brass... [more]
UPI00142D92C54.460e-634.95uncharacterized protein LOC117131646 n=1 Tax=Brass... [more]
UPI000BBF21254.600e-636.71uncharacterized protein LOC111214429 n=3 Tax=Brass... [more]
UPI0006A744434.840e-636.26uncharacterized protein LOC106321044 n=1 Tax=Brass... [more]
A0A151ITN2_9HYME6.320e-635.44Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A1J3DSB6_NOCCA6.880e-636.84Uncharacterized protein (Fragment) n=1 Tax=Noccaea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42844contigH-paniculata_contig42844:934..1326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score62.0
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog7425.NV17383-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size393
Cds size393
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930303.2508013-CDS-H-paniculata_contig42844:933..13261622930303.2508013-CDS-H-paniculata_contig42844:933..1326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42844 934..1326 +
1691481233.0197902-CDS-H-paniculata_contig42844:933..13261691481233.0197902-CDS-H-paniculata_contig42844:933..1326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42844 934..1326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42844.10957.1prot_H-paniculata_contig42844.10957.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42844 934..1326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42844.10957.1

>prot_H-paniculata_contig42844.10957.1 ID=prot_H-paniculata_contig42844.10957.1|Name=mRNA_H-paniculata_contig42844.10957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MEIWICDNGATKHMTHDSDFLFDYQQCNGHVRLADGNRLPIEGVGMLSLQ
FRFDSEVVLMKLTQVAFVPLLSHHLLSFGKFVDFGNEYRRSREGLRINLK
TGRVLSAERFGSLDVMRGSRVCPEDSALATI
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mRNA from alignment at H-paniculata_contig42844:934..1326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42844.10957.1 ID=mRNA_H-paniculata_contig42844.10957.1|Name=mRNA_H-paniculata_contig42844.10957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at H-paniculata_contig42844:934..1326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATATGTGATAATGGTGCAACGAAACACATGACTCATGA TTCAGATTTTCTTTTTGATTACCAGCAATGTAATGGGCATGTACGCCTTG CAGATGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGCTGTCCCTTCAA TTTCGGTTTGACTCCGAGGTTGTATTGATGAAGTTAACTCAGGTTGCGTT CGTACCACTCCTCAGCCATCACCTCCTATCTTTCGGGAAATTCGTGGACT TTGGTAATGAATATAGGCGTTCCCGCGAAGGGCTCAGAATTAACCTTAAA ACAGGGAGAGTTCTGAGTGCTGAGCGATTTGGTAGCCTTGACGTGATGCG AGGGTCGCGAGTTTGTCCCGAAGATAGTGCGCTTGCAACGATA
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Coding sequence (CDS) from alignment at H-paniculata_contig42844:934..1326+

>mRNA_H-paniculata_contig42844.10957.1 ID=mRNA_H-paniculata_contig42844.10957.1|Name=mRNA_H-paniculata_contig42844.10957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig42844:934..1326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATATGTGATAATGGTGCAACGAAACACATGACTCATGA
TTCAGATTTTCTTTTTGATTACCAGCAATGTAATGGGCATGTACGCCTTG
CAGATGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGCTGTCCCTTCAA
TTTCGGTTTGACTCCGAGGTTGTATTGATGAAGTTAACTCAGGTTGCGTT
CGTACCACTCCTCAGCCATCACCTCCTATCTTTCGGGAAATTCGTGGACT
TTGGTAATGAATATAGGCGTTCCCGCGAAGGGCTCAGAATTAACCTTAAA
ACAGGGAGAGTTCTGAGTGCTGAGCGATTTGGTAGCCTTGACGTGATGCG
AGGGTCGCGAGTTTGTCCCGAAGATAGTGCGCTTGCAACGATAATGGAGA
TCTGGATATGTGATAATGGTGCAACGAAACACATGACTCATGATTCAGAT
TTTCTTTTTGATTACCAGCAATGTAATGGGCATGTACGCCTTGCAGATGG
TAACCGTCTCCCGATCGAAGGAGTTGGCATGCTGTCCCTTCAATTTCGGT
TTGACTCCGAGGTTGTATTGATGAAGTTAACTCAGGTTGCGTTCGTACCA
CTCCTCAGCCATCACCTCCTATCTTTCGGGAAATTCGTGGACTTTGGTAA
TGAATATAGGCGTTCCCGCGAAGGGCTCAGAATTAACCTTAAAACAGGGA
GAGTTCTGAGTGCTGAGCGATTTGGTAGCCTTGACGTGATGCGAGGGTCG
CGAGTTTGTCCCGAAGATAGTGCGCTTGCAACGATA
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