mRNA_H-paniculata_contig42775.10943.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42775.10943.1
Unique NamemRNA_H-paniculata_contig42775.10943.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42775.10943.1 vs. uniprot
Match: D8LSH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH0_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 3.200e-45
Identity = 78/105 (74.29%), Postives = 92/105 (87.62%), Query Frame = 1
Query:   31 IQVLYQLTATDRNGDVRHFEKPLFLTMLMFVAMACALPIYSILQRWQAPEDRAPKVPARVLWWLVVPSLFDLAGTSMAQMGLLFTTVSYYQLLRCTVIVVTAFLK 345
            I++LYQ+++TD  G+ RHFEKPLFLT +MFVAM+ ALPIY + Q  +APEDR PKVP RVL WLVVPS+FDLAGT+ AQ+GLLFTTVSY+QLLRCTVIVVTAFLK
Sbjct:   32 IKMLYQMSSTDVAGNERHFEKPLFLTFIMFVAMSAALPIYYVQQLLKAPEDRPPKVPGRVLGWLVVPSIFDLAGTNFAQIGLLFTTVSYFQLLRCTVIVVTAFLK 136          
BLAST of mRNA_H-paniculata_contig42775.10943.1 vs. uniprot
Match: A0A6H5KUQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ5_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 8.750e-45
Identity = 78/105 (74.29%), Postives = 92/105 (87.62%), Query Frame = 1
Query:   31 IQVLYQLTATDRNGDVRHFEKPLFLTMLMFVAMACALPIYSILQRWQAPEDRAPKVPARVLWWLVVPSLFDLAGTSMAQMGLLFTTVSYYQLLRCTVIVVTAFLK 345
            I++LYQ+++TD  G+ RHFEKPLFLT +MFVAM+ ALPIY + Q  +APEDR PKVP RVL WLVVPS+FDLAGT+ AQ+GLLFTTVSY+QLLRCTVIVVTAFLK
Sbjct:   32 IKMLYQMSSTDIAGNERHFEKPLFLTFIMFVAMSAALPIYYVQQLLKAPEDRPPKVPGRVLGWLVVPSIFDLAGTNFAQIGLLFTTVSYFQLLRCTVIVVTAFLK 136          
BLAST of mRNA_H-paniculata_contig42775.10943.1 vs. uniprot
Match: A0A836CAF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.400e-33
Identity = 65/105 (61.90%), Postives = 82/105 (78.10%), Query Frame = 1
Query:   31 IQVLYQLTATDRNGDVRHFEKPLFLTMLMFVAMACALPIYSILQRWQAPEDRAPKVPARVLWWLVVPSLFDLAGTSMAQMGLLFTTVSYYQLLRCTVIVVTAFLK 345
            I++LYQ +A D  G + HFEKP+ LT +MFVAMA ALP + + Q  + P +RA  VP RVL WL +PS+FDL GT+ AQ+GL++TTVSY+QLLRCTVIVVTAFLK
Sbjct:   33 IKLLYQQSAVDSTGAISHFEKPMLLTFIMFVAMAFALPCFMVQQMLKPPAERAT-VPRRVLLWLAIPSVFDLLGTNFAQIGLVYTTVSYFQLLRCTVIVVTAFLK 136          
BLAST of mRNA_H-paniculata_contig42775.10943.1 vs. uniprot
Match: A0A024UGN4_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024UGN4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.750e-20
Identity = 50/116 (43.10%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   34 QVLYQLTATDRNGDVRHFEKPLFLTMLMFVAMACALPI-----YSILQRWQAPED------RAPKVPARVLWWLVVPSLFDLAGTSMAQMGLLFTTVSYYQLLRCTVIVVTAFLKV 348
            +V+Y + A   NG+ R FEKP+F T+LMF AM  ALPI     + + ++W A         R  ++P R  + L +P+ FDL GT +A +GLL+ TVS +QL++CTVI+  A LKV
Sbjct:   26 KVMYDIDAVGLNGETRKFEKPIFQTLLMFAAMIFALPIQWAYHWHLERKWHANGGKSSGFKRPARIPIRTYFILALPAAFDLLGTYLANLGLLYVTVSVFQLMKCTVIIFVALLKV 141          
BLAST of mRNA_H-paniculata_contig42775.10943.1 vs. uniprot
Match: A0A7S3UY76_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY76_HETAK)

HSP 1 Score: 92.0 bits (227), Expect = 1.700e-19
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   16 LFLVNIQVLYQLTATDRNGDVRHFEKPLFLTMLMFVAMACALPIYSILQRWQAPEDRAPKVPARVLWWLVVPSLFDLAGTSMAQMGLLFTTVSYYQLLRCTVIVVTAFLKV 348
            L  +  Q LYQ+ +   NG ++ + KP+    +MFVAM  ALPIY + Q +    +   +VP RVL  +  PSLFD+ GT + Q GL++T+ S YQ+LRC VI+ TA LK+
Sbjct:   29 LTTLTCQFLYQMESVGANGYLKPYNKPITTVFVMFVAMMAALPIYWVQQVFFTEPNLRQRVPNRVLLKMAWPSLFDMLGTGLGQAGLVYTSASMYQILRCAVILCTATLKI 139          
BLAST of mRNA_H-paniculata_contig42775.10943.1 vs. uniprot
Match: A0A6G0XVI4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVI4_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.330e-19
Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   34 QVLYQLTATDRNGDVRHFEKPLFLTMLMFVAMACALPI-----YSILQRWQAPED------RAPKVPARVLWWLVVPSLFDLAGTSMAQMGLLFTTVSYYQLLRCTVIVVTAFLKV 348
            +V+Y +     +G+ R FEKP+F TMLMF AM  ALPI     +++  +W A         R  ++P R  + L +P+ FDL GT +A +GLL+ TVS +QL++CTVI+  A LKV
Sbjct:   26 KVMYDIDTIGLDGETRKFEKPIFQTMLMFAAMVFALPIQWIYHWNLEHQWHAKGGALSGFKRPARIPMRTYFILALPAAFDLLGTYLANLGLLYVTVSVFQLMKCTVIIFVALLKV 141          
BLAST of mRNA_H-paniculata_contig42775.10943.1 vs. uniprot
Match: D0N5P1_PHYIT (EamA domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N5P1_PHYIT)

HSP 1 Score: 87.0 bits (214), Expect = 5.070e-19
Identity = 46/114 (40.35%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   31 IQVLYQLTATDRNGDVRHFEKPLFLTMLMFVAMACALPI-----YSILQRWQAPEDRAP---KVPARVLWWLVVPSLFDLAGTSMAQMGLLFTTVSYYQLLRCTVIVVTAFLKV 348
            + +LY + +   +G+VR FEKP+F T LMF+AM  ALPI     Y + ++W+   +      ++P ++ + L +P+ FDL  T +A +GLL+ TVS +QL++CTVI+  A LKV
Sbjct:   23 LYILYGVDSVGLDGEVRKFEKPIFQTWLMFLAMVFALPIHWAYHYHVERQWRNNRNGMKYRYRIPRKMYFLLALPAAFDLLATFVANIGLLYVTVSVFQLMKCTVIIFVALLKV 136          
BLAST of mRNA_H-paniculata_contig42775.10943.1 vs. uniprot
Match: A0A485LKZ6_9STRA (Aste57867_22450 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKZ6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.330e-19
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   34 QVLYQLTATDRNGDVRHFEKPLFLTMLMFVAMACALPI-----YSILQRWQ------APEDRAPKVPARVLWWLVVPSLFDLAGTSMAQMGLLFTTVSYYQLLRCTVIVVTAFLKV 348
            +V+Y + A   +G+ R FEKP+F T+LMF AM  ALPI     + + ++W+      +   R  ++P R  + L +P+ FDL GT +A +GLL+ TVS +QL++CTVI+  A LKV
Sbjct:   70 KVMYDIDAVGLDGETRKFEKPIFQTLLMFAAMVFALPIQWLYHWHLERQWETNGGKSSGVKRPTRIPIRTYFILALPAAFDLIGTYLANLGLLYVTVSVFQLMKCTVIIFVAILKV 185          
BLAST of mRNA_H-paniculata_contig42775.10943.1 vs. uniprot
Match: F0WQC0_9STRA (Drug/Metabolite Transporter (DMT) Superfamily putat n=2 Tax=Albugo TaxID=65356 RepID=F0WQC0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.170e-18
Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   34 QVLYQLTATDRNGDVRHFEKPLFLTMLMFVAMACALPIY-----SILQRWQAPEDRAPK----VPARVLWWLVVPSLFDLAGTSMAQMGLLFTTVSYYQLLRCTVIVVTAFLKV 348
            ++LY + A    G+++ FEKP+F T LMF+AM  ALPI+      + ++W  P     K    +P R  + L  P+LFDL  T  A +GL++ TVS +QL++CTVI+  A LKV
Sbjct:   37 KILYNVDAVGLGGEMKKFEKPIFQTWLMFLAMVFALPIHWAYRWHVERKWSRPSSTPLKFRYRIPRRTYFLLAFPALFDLIATWFANIGLMYVTVSVFQLMKCTVIIFVALLKV 150          
BLAST of mRNA_H-paniculata_contig42775.10943.1 vs. uniprot
Match: A0A484EB13_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EB13_BRELC)

HSP 1 Score: 88.2 bits (217), Expect = 4.290e-18
Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 1
Query:   37 VLYQLTATDRNGDVRHFEKPLFLTMLMFVAMACALPI-----YSILQRWQAPEDRAPK----VPARVLWWLVVPSLFDLAGTSMAQMGLLFTTVSYYQLLRCTVIVVTAFLKV 348
            +LY + +   +G+V+ FEKP+F T LMF+AM  ALPI     Y +  +W+     A K    +P R+ + L +P+ FDL  T +A +GLL+ TVS +QL++CTVIV  A LKV
Sbjct:   33 ILYGVDSIGLDGEVKKFEKPIFQTWLMFLAMVFALPIHWAYHYYVDHQWRRNPRGAMKYHYRIPRRMYFLLAIPAAFDLVATFVANLGLLYVTVSVFQLMKCTVIVFVALLKV 145          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42775.10943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSH0_ECTSI3.200e-4574.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUQ5_9PHAE8.750e-4574.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAF8_9STRA1.400e-3361.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A024UGN4_9STRA6.750e-2043.10Uncharacterized protein n=8 Tax=Aphanomyces TaxID=... [more]
A0A7S3UY76_HETAK1.700e-1943.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0XVI4_9STRA3.330e-1942.24Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
D0N5P1_PHYIT5.070e-1940.35EamA domain-containing protein n=1 Tax=Phytophthor... [more]
A0A485LKZ6_9STRA5.330e-1941.38Aste57867_22450 protein n=1 Tax=Aphanomyces stella... [more]
F0WQC0_9STRA3.170e-1841.23Drug/Metabolite Transporter (DMT) Superfamily puta... [more]
A0A484EB13_BRELC4.290e-1843.36Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42775contigH-paniculata_contig42775:710..1610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue9.7e-37
Seed eggNOG ortholog2880.D8LSH0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
EggNOG OGsCOG0697@1,KOG3912@2759
Ec32 ortholog descriptionSolute carrier family 35 member SLC35F1/F2/F6
Ec32 orthologEc-21_003670.1
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size348
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930300.4504662-CDS-H-paniculata_contig42775:709..8711622930300.4504662-CDS-H-paniculata_contig42775:709..871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42775 710..871 +
1691481231.7875352-CDS-H-paniculata_contig42775:709..8711691481231.7875352-CDS-H-paniculata_contig42775:709..871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42775 710..871 +
1622930300.4742677-CDS-H-paniculata_contig42775:1424..16101622930300.4742677-CDS-H-paniculata_contig42775:1424..1610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42775 1425..1610 +
1691481231.8003335-CDS-H-paniculata_contig42775:1424..16101691481231.8003335-CDS-H-paniculata_contig42775:1424..1610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42775 1425..1610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42775.10943.1prot_H-paniculata_contig42775.10943.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42775 710..1610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42775.10943.1

>prot_H-paniculata_contig42775.10943.1 ID=prot_H-paniculata_contig42775.10943.1|Name=mRNA_H-paniculata_contig42775.10943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MQPERLFLVNIQVLYQLTATDRNGDVRHFEKPLFLTMLMFVAMACALPIY
SILQRWQAPEDRAPKVPARVLWWLVVPSLFDLAGTSMAQMGLLFTTVSYY
QLLRCTVIVVTAFLKV
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mRNA from alignment at H-paniculata_contig42775:710..1610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42775.10943.1 ID=mRNA_H-paniculata_contig42775.10943.1|Name=mRNA_H-paniculata_contig42775.10943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=901bp|location=Sequence derived from alignment at H-paniculata_contig42775:710..1610+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACCCGAGCGATTATTTTTGGTCAATATCCAGGTGCTCTACCAGCT CACAGCTACGGACAGAAACGGCGACGTACGGCACTTCGAGAAGCCGCTGT TCCTCACGATGCTTATGTTCGTTGCCATGGCGTGCGCTTTGCCCATCTAT TCGATCCTTCAGGTGCGTACATGCGTGTTGTCTACGCAGCTTCGACCAGG TACAGCTCTATGCTGCTCTGGTTATACCCATGGTTGCATCACTGGGCACA TCACTACCGCTCGAATTTGGAGGAAAACAAACGAACACAAACACACAAAC ACACAAACACACACACACACAACGCCTAATCACAAGAATTTATTATTATG GGTGGAGACAACACAAAACAGTTCGATCGGTCAATAGGACCCCGCCCTTG ACTCCCTTATTGGTCATAATCTAATTTTGCCGATAAGTGGATACAACTGA GAGTTGAGGCCAACTAAACTACTTAACCTTAACATAGGTATGTACAATGG AGTCATTATATGAGCGTCTTAGATCTATTACTAACTATGGCAAGTGGATT TGACTCGTAAATAAGGCTTCCGGTCCGTGAATCCCTCCCCACCCTCCCCA CTCACCGCTCCCCCGCCTCTGCGCTACCAGTATCGGTTCTGCTCACCTTT ATTTAGTTCGTAACACTTACTTTCTCACGACTTTTTTTTGCCAAACTACA CGACAAATGGCACAGCGGTGGCAGGCGCCGGAAGACCGGGCTCCCAAAGT GCCTGCTCGCGTGCTGTGGTGGCTAGTCGTCCCGTCGCTATTCGATCTCG CGGGCACGAGCATGGCTCAGATGGGCCTGCTGTTCACAACCGTGAGCTAC TACCAGCTTCTGCGCTGCACCGTCATTGTCGTTACAGCTTTCCTTAAGGT G
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Coding sequence (CDS) from alignment at H-paniculata_contig42775:710..1610+

>mRNA_H-paniculata_contig42775.10943.1 ID=mRNA_H-paniculata_contig42775.10943.1|Name=mRNA_H-paniculata_contig42775.10943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig42775:710..1610+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACCCGAGCGATTATTTTTGGTCAATATCCAGGTGCTCTACCAGCT
CACAGCTACGGACAGAAACGGCGACGTACGGCACTTCGAGAAGCCGCTGT
TCCTCACGATGCTTATGTTCGTTGCCATGGCGTGCGCTTTGCCCATCTAT
TCGATCCTTCAGATGCAACCCGAGCGATTATTTTTGGTCAATATCCAGGT
GCTCTACCAGCTCACAGCTACGGACAGAAACGGCGACGTACGGCACTTCG
AGAAGCCGCTGTTCCTCACGATGCTTATGTTCGTTGCCATGGCGTGCGCT
TTGCCCATCTATTCGATCCTTCAGCGGTGGCAGGCGCCGGAAGACCGGGC
TCCCAAAGTGCCTGCTCGCGTGCTGTGGTGGCTAGTCGTCCCGTCGCTAT
TCGATCTCGCGGGCACGAGCATGGCTCAGATGGGCCTGCTGTTCACAACC
GTGAGCTACTACCAGCTTCTGCGCTGCACCGTCATTGTCGTTACAGCTTT
CCTTAAGGTGCGGTGGCAGGCGCCGGAAGACCGGGCTCCCAAAGTGCCTG
CTCGCGTGCTGTGGTGGCTAGTCGTCCCGTCGCTATTCGATCTCGCGGGC
ACGAGCATGGCTCAGATGGGCCTGCTGTTCACAACCGTGAGCTACTACCA
GCTTCTGCGCTGCACCGTCATTGTCGTTACAGCTTTCCTTAAGGTG
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