mRNA_H-paniculata_contig4276.10939.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4276.10939.1
Unique NamemRNA_H-paniculata_contig4276.10939.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4276.10939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4276contigH-paniculata_contig4276:2988..3840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size183
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4276.10939.1prot_H-paniculata_contig4276.10939.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4276 3029..3840 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930299.919133-UTR-H-paniculata_contig4276:2987..30281622930299.919133-UTR-H-paniculata_contig4276:2987..3028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4276 2988..3028 -
1691481231.524303-UTR-H-paniculata_contig4276:2987..30281691481231.524303-UTR-H-paniculata_contig4276:2987..3028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4276 2988..3028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930299.935082-CDS-H-paniculata_contig4276:3028..31481622930299.935082-CDS-H-paniculata_contig4276:3028..3148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4276 3029..3148 -
1691481231.536288-CDS-H-paniculata_contig4276:3028..31481691481231.536288-CDS-H-paniculata_contig4276:3028..3148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4276 3029..3148 -
1622930299.9528306-CDS-H-paniculata_contig4276:3777..38401622930299.9528306-CDS-H-paniculata_contig4276:3777..3840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4276 3778..3840 -
1691481231.5498579-CDS-H-paniculata_contig4276:3777..38401691481231.5498579-CDS-H-paniculata_contig4276:3777..3840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4276 3778..3840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4276.10939.1

>prot_H-paniculata_contig4276.10939.1 ID=prot_H-paniculata_contig4276.10939.1|Name=mRNA_H-paniculata_contig4276.10939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
YGKGATIERRENSEASQENREEPCQVAWNCTDLSACQESTCYVLNIRLCA
TPLLGGSHRA*
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mRNA from alignment at H-paniculata_contig4276:2988..3840-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4276.10939.1 ID=mRNA_H-paniculata_contig4276.10939.1|Name=mRNA_H-paniculata_contig4276.10939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=853bp|location=Sequence derived from alignment at H-paniculata_contig4276:2988..3840- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGGAAAGGGCGCGACTATCGAACGGCGAGAAAACTCCGAAGCCTCACA
GGAGAATAGAGAGGTGAGCCTCACCGAACACCTGCCGCAATTGATCTGAT
GTAAGTGTAGTCATTGTACTATTTTGACAGATGTACAACCTCTCCAACCA
CCAACTCAGACACTGACAGACCCTCCTGCCTCGGCTGACACATGGGTACA
AAATTGATTGCGATACCCGACTGTAATGGACTGATTTTACACGCCTGTTG
CCCAGCTAGATATTTCAAGGGGTTTCAAACCCTATGTACAATGGGTCTAT
TTTCGATGTTAGTTTCTCCGACCATTAAATACATGGCGGTTCACCCGCCG
TTTTCACGTGACTCACGTTTGCGTTTGACAGCATAGAAACTTGTATATCC
GAACCAGAACAATCATCAAAGTTGAATCTCTATCAGACAAGTCCATGCGA
ACCACGTGCTCTCACGCAGTAATAAACATTGTGTGCGGGATTTGCCAGGA
GTCCTGGATGCACTCAGCTTGCTTCTCGGTTGCTCTCTTTGTGAGGTGTT
GCGAGGCCTGAATAAAATGTTGAGAAAAACGTGTCCCATGCATGATCGAG
ATGAGGAGGAATGGTGCTCTCAGGGAATGAACACCTTTCATGTTTTTAGT
GAAATGGTCATTGTAACGCACAATTCGAATTTTCGCACACAGGAACCCTG
CCAAGTTGCGTGGAACTGTACGGATCTATCAGCCTGCCAAGAAAGCACAT
GCTATGTCCTGAACATACGGTTGTGTGCTACTCCTCTCCTTGGAGGATCG
CATCGTGCGTAGGAGGTTTTCATCTCCACGCATACACCTGGCAAGAGGAA
GAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4276:2988..3840-

>mRNA_H-paniculata_contig4276.10939.1 ID=mRNA_H-paniculata_contig4276.10939.1|Name=mRNA_H-paniculata_contig4276.10939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig4276:2988..3840- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGGAAAGGGCGCGACTATCGAACGGCGAGAAAACTCCGAAGCCTCACA
GGAGAATAGAGAGTACGGAAAGGGCGCGACTATCGAACGGCGAGAAAACT
CCGAAGCCTCACAGGAGAATAGAGAGGAACCCTGCCAAGTTGCGTGGAAC
TGTACGGATCTATCAGCCTGCCAAGAAAGCACATGCTATGTCCTGAACAT
ACGGTTGTGTGCTACTCCTCTCCTTGGAGGATCGCATCGTGCGTAGGAAC
CCTGCCAAGTTGCGTGGAACTGTACGGATCTATCAGCCTGCCAAGAAAGC
ACATGCTATGTCCTGAACATACGGTTGTGTGCTACTCCTCTCCTTGGAGG
ATCGCATCGTGCGTAG
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