mRNA_H-paniculata_contig42737.10935.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42737.10935.1
Unique NamemRNA_H-paniculata_contig42737.10935.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU)

HSP 1 Score: 53.1 bits (126), Expect = 3.810e-6
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query:   13 NMWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHK 252
            N+W++DSGASNH+T N+S +     P  G + + +GDG+ L +   G    I H++      L V + P++  NL S+HK
Sbjct:   23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHK 99          
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A5E4G702_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G702_PRUDU)

HSP 1 Score: 52.8 bits (125), Expect = 7.760e-6
Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   13 NMWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHK 252
            N+W++DSGASNH+T+N+S +     P  G + + +GDG+ L +        I H++      L V ++P++  NL S+HK
Sbjct:  116 NLWLADSGASNHVTSNMSNLGH-SSPYTGSETLRVGDGNSLPIS--HTRSTILHTSNAKFHLLNVLHVPQVAHNLLSVHK 192          
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS)

HSP 1 Score: 52.0 bits (123), Expect = 1.380e-5
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    7 NGNMWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATL-EVSYLPELNFNLFSLHKI 255
            N N WV DSGA++H+T +LS +  L +P  G + V + DG+ L +   G   L    T   P TL +V Y+P+L  NL S++++
Sbjct:  111 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRL 190          
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS)

HSP 1 Score: 52.0 bits (123), Expect = 1.490e-5
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    7 NGNMWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATL-EVSYLPELNFNLFSLHKI 255
            N N WV DSGA++H+T +LS +  L +P  G + V + DG+ L +   G   L    T   P TL +V Y+P+L  NL S++++
Sbjct:  329 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRL 408          
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A834W5F6_9FABA (UBN2_3 domain-containing protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W5F6_9FABA)

HSP 1 Score: 51.6 bits (122), Expect = 1.880e-5
Identity = 26/75 (34.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query:   19 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFS 243
            W+ DSGASNH+T NL+ + D R+P    +   L DG +  V L+G+  +     +D  +   V ++P+  +NL S
Sbjct:  271 WIVDSGASNHITGNLTLLSDTREPKGSNNTEQLPDGVVKNVKLIGRAKI-----SDALSLEHVLFVPDFKYNLIS 340          
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A438DCV3_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DCV3_VITVI)

HSP 1 Score: 50.8 bits (120), Expect = 3.060e-5
Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   19 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKI 255
            W+ DSGAS+H+T+NLS +  +  P  G D +M+GDG+ L +   G L +  H++    +   V  +P +  NL S+ K+
Sbjct:  133 WLLDSGASHHVTSNLSNL-SIHAPYNGSDDIMIGDGTGLPITHTGSLSI--HTSNAQFSLTNVLCVPSMKKNLISISKL 208          
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A2K3L0D5_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L0D5_TRIPR)

HSP 1 Score: 50.1 bits (118), Expect = 6.730e-5
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   19 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFS 243
            W+SD+GASNHMT   S + ++R+  +G D V++GDGS L +  +G    I    T +P   +V  +P+L  NL S
Sbjct:  340 WISDTGASNHMTGKTSMLSNIRQ-CSGTDFVLIGDGSPLPIHGIGD-SFIKQKNTTLPLH-DVLLVPDLTKNLLS 411          
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA)

HSP 1 Score: 49.7 bits (117), Expect = 6.860e-5
Identity = 27/78 (34.62%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   19 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHK 252
            W +DSGA+NH+TN+LS +  +++P  G + V + +GS L +  +G  +LI +S T      ++ ++P+++ NL S+ K
Sbjct:   64 WFADSGATNHLTNDLSNLQ-VKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISK 138          
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A151SCF9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SCF9_CAJCA)

HSP 1 Score: 49.7 bits (117), Expect = 7.570e-5
Identity = 25/79 (31.65%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   16 MWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHK 252
            MW  DSGASNH+TN++S +   ++   G+  V++GDG+ L++  +G   +    +    +   + Y+P ++ NL S+ K
Sbjct:   13 MWYPDSGASNHLTNDISYL-STKQEYQGKQRVLVGDGNSLLISHIGHSKMHTAQSNITFSLPNIMYIPNISKNLLSISK 90          
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: UPI000CED6155 (uncharacterized protein LOC112101007 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED6155)

HSP 1 Score: 49.7 bits (117), Expect = 8.540e-5
Identity = 32/95 (33.68%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   19 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATL---EVSYLPELNFNLFSLHKIQWKYPVILDAAGS 294
            W  DS A+NH+TN+LSK+ +  K   G + + +GDG+ L+++ VG + L    TT+   +L    V ++P++  NL S+ K+     V L+  G+
Sbjct:  208 WYIDSEATNHITNDLSKLVN-PKAYVGNEQLYVGDGNALLIEHVGSVQL----TTNTFESLFLNHVLHVPKITKNLLSVSKLLADNNVTLEFVGT 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A5E4GCQ9_PRUDU3.810e-636.25PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 R... [more]
A0A5E4G702_PRUDU7.760e-635.00PREDICTED: Retrovirus-related Pol poly from (Fragm... [more]
A0A6D2JUM8_9BRAS1.380e-538.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2KMT9_9BRAS1.490e-538.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A834W5F6_9FABA1.880e-534.67UBN2_3 domain-containing protein n=1 Tax=Senna tor... [more]
A0A438DCV3_VITVI3.060e-535.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3L0D5_TRIPR6.730e-540.00Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
A0A834W4R7_9FABA6.860e-534.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A151SCF9_CAJCA7.570e-531.65Retrovirus-related Pol polyprotein from transposon... [more]
UPI000CED61558.540e-533.68uncharacterized protein LOC112101007 n=1 Tax=Citru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42737contigH-paniculata_contig42737:1419..1712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size279
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930299.623654-UTR-H-paniculata_contig42737:1418..14331622930299.623654-UTR-H-paniculata_contig42737:1418..1433Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42737 1419..1433 +
1691481231.4144294-UTR-H-paniculata_contig42737:1418..14331691481231.4144294-UTR-H-paniculata_contig42737:1418..1433Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42737 1419..1433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930299.6435509-CDS-H-paniculata_contig42737:1433..17121622930299.6435509-CDS-H-paniculata_contig42737:1433..1712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42737 1434..1712 +
1691481231.4265645-CDS-H-paniculata_contig42737:1433..17121691481231.4265645-CDS-H-paniculata_contig42737:1433..1712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42737 1434..1712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42737.10935.1prot_H-paniculata_contig42737.10935.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42737 1434..1712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42737.10935.1

>prot_H-paniculata_contig42737.10935.1 ID=prot_H-paniculata_contig42737.10935.1|Name=mRNA_H-paniculata_contig42737.10935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDL
IFHSTTDVPATLEVSYLPELNFNLFSLHKIQWKYPVILDAAGS
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mRNA from alignment at H-paniculata_contig42737:1419..1712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42737.10935.1 ID=mRNA_H-paniculata_contig42737.10935.1|Name=mRNA_H-paniculata_contig42737.10935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig42737:1419..1712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTAACAATGGCAATATGTGGGTGTCTGATTCTGGTGCAAGTAACCACAT GACGAACAATCTTTCAAAAATGTATGACCTTCGCAAGCCGGTGGCAGGGG AAGATGTGGTAATGTTGGGGGATGGATCGATTCTGGTGGTAGATTTGGTG GGAAAGTTGGATTTGATTTTTCACTCCACTACCGACGTGCCTGCCACACT TGAAGTATCATACTTACCGGAGTTGAACTTCAACCTTTTTTCCCTCCACA AAATCCAATGGAAGTATCCTGTAATTTTGGATGCAGCAGGCTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig42737:1419..1712+

>mRNA_H-paniculata_contig42737.10935.1 ID=mRNA_H-paniculata_contig42737.10935.1|Name=mRNA_H-paniculata_contig42737.10935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig42737:1419..1712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGTGTCTGATTCTGGTGCAAGTAACCACATGACGAACAATCTTTC
AAAAATGTATGACCTTCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATGT
TGGGGGATGGATCGATTCTGGTGGTAGATTTGGTGGGAAAGTTGGATTTG
ATTTTTCACTCCACTACCGACGTGCCTGCCACACTTGAAGTATCATACTT
ACCGGAGTTGAACTTCAACCTTTTTTCCCTCCACAAAATCCAATGGAAGT
ATCCTGTAATTTTGGATGCAGCAGGCTCAATGTGGGTGTCTGATTCTGGT
GCAAGTAACCACATGACGAACAATCTTTCAAAAATGTATGACCTTCGCAA
GCCGGTGGCAGGGGAAGATGTGGTAATGTTGGGGGATGGATCGATTCTGG
TGGTAGATTTGGTGGGAAAGTTGGATTTGATTTTTCACTCCACTACCGAC
GTGCCTGCCACACTTGAAGTATCATACTTACCGGAGTTGAACTTCAACCT
TTTTTCCCTCCACAAAATCCAATGGAAGTATCCTGTAATTTTGGATGCAG
CAGGCTCA
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