mRNA_H-paniculata_contig42737.10935.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU) HSP 1 Score: 53.1 bits (126), Expect = 3.810e-6 Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 13 NMWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHK 252
N+W++DSGASNH+T N+S + P G + + +GDG+ L + G I H++ L V + P++ NL S+HK
Sbjct: 23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHK 99
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A5E4G702_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G702_PRUDU) HSP 1 Score: 52.8 bits (125), Expect = 7.760e-6 Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 13 NMWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHK 252
N+W++DSGASNH+T+N+S + P G + + +GDG+ L + I H++ L V ++P++ NL S+HK
Sbjct: 116 NLWLADSGASNHVTSNMSNLGH-SSPYTGSETLRVGDGNSLPIS--HTRSTILHTSNAKFHLLNVLHVPQVAHNLLSVHK 192
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS) HSP 1 Score: 52.0 bits (123), Expect = 1.380e-5 Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 7 NGNMWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATL-EVSYLPELNFNLFSLHKI 255
N N WV DSGA++H+T +LS + L +P G + V + DG+ L + G L T P TL +V Y+P+L NL S++++
Sbjct: 111 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRL 190
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS) HSP 1 Score: 52.0 bits (123), Expect = 1.490e-5 Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 7 NGNMWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATL-EVSYLPELNFNLFSLHKI 255
N N WV DSGA++H+T +LS + L +P G + V + DG+ L + G L T P TL +V Y+P+L NL S++++
Sbjct: 329 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRL 408
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A834W5F6_9FABA (UBN2_3 domain-containing protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W5F6_9FABA) HSP 1 Score: 51.6 bits (122), Expect = 1.880e-5 Identity = 26/75 (34.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query: 19 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFS 243
W+ DSGASNH+T NL+ + D R+P + L DG + V L+G+ + +D + V ++P+ +NL S
Sbjct: 271 WIVDSGASNHITGNLTLLSDTREPKGSNNTEQLPDGVVKNVKLIGRAKI-----SDALSLEHVLFVPDFKYNLIS 340
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A438DCV3_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DCV3_VITVI) HSP 1 Score: 50.8 bits (120), Expect = 3.060e-5 Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 19 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKI 255
W+ DSGAS+H+T+NLS + + P G D +M+GDG+ L + G L + H++ + V +P + NL S+ K+
Sbjct: 133 WLLDSGASHHVTSNLSNL-SIHAPYNGSDDIMIGDGTGLPITHTGSLSI--HTSNAQFSLTNVLCVPSMKKNLISISKL 208
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A2K3L0D5_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L0D5_TRIPR) HSP 1 Score: 50.1 bits (118), Expect = 6.730e-5 Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query: 19 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFS 243
W+SD+GASNHMT S + ++R+ +G D V++GDGS L + +G I T +P +V +P+L NL S
Sbjct: 340 WISDTGASNHMTGKTSMLSNIRQ-CSGTDFVLIGDGSPLPIHGIGD-SFIKQKNTTLPLH-DVLLVPDLTKNLLS 411
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA) HSP 1 Score: 49.7 bits (117), Expect = 6.860e-5 Identity = 27/78 (34.62%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 19 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHK 252
W +DSGA+NH+TN+LS + +++P G + V + +GS L + +G +LI +S T ++ ++P+++ NL S+ K
Sbjct: 64 WFADSGATNHLTNDLSNLQ-VKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISK 138
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: A0A151SCF9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SCF9_CAJCA) HSP 1 Score: 49.7 bits (117), Expect = 7.570e-5 Identity = 25/79 (31.65%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 16 MWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHK 252
MW DSGASNH+TN++S + ++ G+ V++GDG+ L++ +G + + + + Y+P ++ NL S+ K
Sbjct: 13 MWYPDSGASNHLTNDISYL-STKQEYQGKQRVLVGDGNSLLISHIGHSKMHTAQSNITFSLPNIMYIPNISKNLLSISK 90
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Match: UPI000CED6155 (uncharacterized protein LOC112101007 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED6155) HSP 1 Score: 49.7 bits (117), Expect = 8.540e-5 Identity = 32/95 (33.68%), Postives = 55/95 (57.89%), Query Frame = 1
Query: 19 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLIFHSTTDVPATL---EVSYLPELNFNLFSLHKIQWKYPVILDAAGS 294
W DS A+NH+TN+LSK+ + K G + + +GDG+ L+++ VG + L TT+ +L V ++P++ NL S+ K+ V L+ G+
Sbjct: 208 WYIDSEATNHITNDLSKLVN-PKAYVGNEQLYVGDGNALLIEHVGSVQL----TTNTFESLFLNHVLHVPKITKNLLSVSKLLADNNVTLEFVGT 297 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42737.10935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig42737.10935.1 >prot_H-paniculata_contig42737.10935.1 ID=prot_H-paniculata_contig42737.10935.1|Name=mRNA_H-paniculata_contig42737.10935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp MWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVMLGDGSILVVDLVGKLDLback to top mRNA from alignment at H-paniculata_contig42737:1419..1712+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig42737.10935.1 ID=mRNA_H-paniculata_contig42737.10935.1|Name=mRNA_H-paniculata_contig42737.10935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig42737:1419..1712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig42737:1419..1712+ >mRNA_H-paniculata_contig42737.10935.1 ID=mRNA_H-paniculata_contig42737.10935.1|Name=mRNA_H-paniculata_contig42737.10935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig42737:1419..1712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |