mRNA_H-paniculata_contig42706.10925.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42706.10925.1
Unique NamemRNA_H-paniculata_contig42706.10925.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 57.8 bits (138), Expect = 1.860e-7
Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 EIWICDNGATKHMTHDSDFLFYYQEC-DGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLG 234
            ++WI D+GA++HMTH S+++   Q   D HV L DG +  + G G +++Q   D + +   L  V ++P L+ +L S+G
Sbjct:  286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364          
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM)

HSP 1 Score: 52.4 bits (124), Expect = 1.460e-5
Identity = 35/103 (33.98%), Postives = 57/103 (55.34%), Query Frame = 1
Query:   10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRCSREELRI-NLKTGRVL 312
            I D+GA+ HM  D   +   ++  G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS+ K   D G +     +++   +LKTGRV+
Sbjct:  308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401          
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: UPI00142DAD44 (uncharacterized protein LOC117126729 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142DAD44)

HSP 1 Score: 52.4 bits (124), Expect = 1.500e-5
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 1
Query:   10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYR 264
            I D GA+ HM  D+  + Y +   GHV +A+G+R+PI G+G L L F  DS+          F+P  + +LLS       GH ++
Sbjct:  379 IIDYGASHHMISDNSLIKYIEPAQGHVMIANGDRIPIRGIGRLKL-FNKDSKAF--------FMPEFTSNLLSDNGGEYTGHAFK 454          
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C)

HSP 1 Score: 51.2 bits (121), Expect = 3.800e-5
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 261
            I D+GA+ HM  D   +   +   GHV +A+G+R+PI GVG L L F  DS+ +        ++P  + +LLS+ K +D G EY
Sbjct:  400 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFASNLLSV-KRSDNGGEY 473          
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.800e-5
Identity = 30/109 (27.52%), Postives = 55/109 (50.46%), Query Frame = 1
Query:    1 EIWICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHE--YRCSREELRINLKTGRVLSAE 321
            +IWI DNG+++H+ +D+ +L   +ECD      +G  L I   G + L+        +++L+ V F   + H+L+S G+    G+   +R  R    ++     VL+ E
Sbjct:  292 DIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVVRLSNVYFAKNVVHNLISYGQLDKVGYPLAHRAERRSKPLSEVNMAVLNEE 400          
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 51.2 bits (121), Expect = 3.870e-5
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 261
            I D+GA+ HM  D   +   +   GHV +A+G+R+PI GVG L L F  DS+ +        ++P  + +LLS+ K +D G EY
Sbjct:  415 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 488          
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 51.2 bits (121), Expect = 3.890e-5
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 261
            I D+GA+ HM  D   +   +   GHV +A+G+R+PI GVG L L F  DS+ +        ++P  + +LLS+ K +D G EY
Sbjct:  414 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 487          
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: UPI00142D92C5 (uncharacterized protein LOC117131646 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D92C5)

HSP 1 Score: 50.8 bits (120), Expect = 4.890e-5
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRCSREELRI-NLKTGRVL 312
            I D GA+ HM  D   +   ++  G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS+ K   D G +     +++   +LKTGRV+
Sbjct:  264 IVDFGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 357          
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: A0A2P6PN01_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PN01_ROSCH)

HSP 1 Score: 50.8 bits (120), Expect = 5.270e-5
Identity = 25/90 (27.78%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    7 WICDNGATKHMT-HDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSR 273
            W  D G + HM+ H   F+   +     +   + +R+P++G G + +Q +     +   ++ V ++P LSH+LLS+GK ++ G++ R  R
Sbjct:  287 WYLDTGCSNHMSGHKELFVELNESIRSEITFGNASRMPVKGKGKISIQLK---NGMYNTISDVYYVPGLSHNLLSVGKLSEKGYDMRIFR 373          
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Match: A0A1J3DSB6_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DSB6_NOCCA)

HSP 1 Score: 48.1 bits (113), Expect = 7.820e-5
Identity = 27/76 (35.53%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   10 ICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGK 237
            I D+GA+ HM  D + +   +   GHV +A+G+++PI+G+G L L   FD E      +Q  ++P  + +LLS+ K
Sbjct:   33 IVDSGASHHMISDLNLIKDIKPALGHVSIANGDQIPIKGIGNLKL---FDKE------SQAFYMPSFTSNLLSVKK 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42706.10925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME1.860e-735.44Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A8D9D973_BRACM1.460e-533.98(field mustard) hypothetical protein (Fragment) n=... [more]
UPI00142DAD441.500e-535.29uncharacterized protein LOC117126729 n=1 Tax=Brass... [more]
UPI000BBEF31C3.800e-538.10uncharacterized protein LOC111199942 n=1 Tax=Brass... [more]
A0A225WMA1_9STRA3.800e-527.52CCHC-type domain-containing protein (Fragment) n=1... [more]
UPI000BBE966B3.870e-538.10uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC903.890e-538.10uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
UPI00142D92C54.890e-533.98uncharacterized protein LOC117131646 n=1 Tax=Brass... [more]
A0A2P6PN01_ROSCH5.270e-527.78Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A1J3DSB6_NOCCA7.820e-535.53Uncharacterized protein (Fragment) n=1 Tax=Noccaea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42706contigH-paniculata_contig42706:999..1322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog67593.Physo138912
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930298.7201061-CDS-H-paniculata_contig42706:998..13221622930298.7201061-CDS-H-paniculata_contig42706:998..1322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42706 999..1322 +
1691481231.0822966-CDS-H-paniculata_contig42706:998..13221691481231.0822966-CDS-H-paniculata_contig42706:998..1322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42706 999..1322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42706.10925.1prot_H-paniculata_contig42706.10925.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42706 999..1322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42706.10925.1

>prot_H-paniculata_contig42706.10925.1 ID=prot_H-paniculata_contig42706.10925.1|Name=mRNA_H-paniculata_contig42706.10925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
EIWICDNGATKHMTHDSDFLFYYQECDGHVRLADGNRLPIEGVGMLFLQF
RFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREELRINLKT
GRVLSAER
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mRNA from alignment at H-paniculata_contig42706:999..1322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42706.10925.1 ID=mRNA_H-paniculata_contig42706.10925.1|Name=mRNA_H-paniculata_contig42706.10925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at H-paniculata_contig42706:999..1322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATGATTC GGATTTTCTTTTCTATTACCAGGAATGTGATGGGCATGTACGCCTTGCAG ATGGTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTTCTTCAATTT CGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGTTTAT TCCACTTCTCAGTCATCACCTTCTATCTCTCGGGAAATTCGCGGACTTTG GTCATGAATATAGGTGTTCGCGCGAAGAGCTCAGAATTAACCTTAAAACA GGGAGAGTTCTGAGTGCTGAGCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig42706:999..1322+

>mRNA_H-paniculata_contig42706.10925.1 ID=mRNA_H-paniculata_contig42706.10925.1|Name=mRNA_H-paniculata_contig42706.10925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig42706:999..1322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATGATTC
GGATTTTCTTTTCTATTACCAGGAATGTGATGGGCATGTACGCCTTGCAG
ATGGTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTTCTTCAATTT
CGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGTTTAT
TCCACTTCTCAGTCATCACCTTCTATCTCTCGGGAAATTCGCGGACTTTG
GTCATGAATATAGGTGTTCGCGCGAAGAGCTCAGAATTAACCTTAAAACA
GGGAGAGTTCTGAGTGCTGAGCGAGAAATCTGGATTTGTGATAATGGTGC
AACGAAACACATGACCCATGATTCGGATTTTCTTTTCTATTACCAGGAAT
GTGATGGGCATGTACGCCTTGCAGATGGTAATCGTCTCCCGATCGAAGGA
GTTGGCATGCTGTTTCTTCAATTTCGATTTGACTCCGAGGTTGTTTTGAT
GAAGTTAACTCAGGTTGCGTTTATTCCACTTCTCAGTCATCACCTTCTAT
CTCTCGGGAAATTCGCGGACTTTGGTCATGAATATAGGTGTTCGCGCGAA
GAGCTCAGAATTAACCTTAAAACAGGGAGAGTTCTGAGTGCTGAGCGA
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