mRNA_H-paniculata_contig42698.10917.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42698.10917.1
Unique NamemRNA_H-paniculata_contig42698.10917.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42698.10917.1 vs. uniprot
Match: A0A8H6YZQ1_9AGAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6YZQ1_9AGAR)

HSP 1 Score: 71.2 bits (173), Expect = 9.350e-13
Identity = 29/69 (42.03%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 KYKCRLVAHGNRQIKGIHYQEASSPAPAAASTKMVLSLAAIQDWELRHVDFEQAYLQAPIDQEIFVEIP 207
            +YK RLVA+G  Q+ G+HY +  +P    A+ +++L+ AA+ +WE+   D + AYL APID+ +++EIP
Sbjct: 1010 RYKVRLVANGRTQVYGLHYTDTYAPVIRHATLRVLLTFAAVNNWEIHQADVKNAYLNAPIDETVYMEIP 1078          
BLAST of mRNA_H-paniculata_contig42698.10917.1 vs. uniprot
Match: A0A8H7CEA5_9AGAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H7CEA5_9AGAR)

HSP 1 Score: 70.1 bits (170), Expect = 2.380e-12
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 KYKCRLVAHGNRQIKGIHYQEASSPAPAAASTKMVLSLAAIQDWELRHVDFEQAYLQAPIDQEIFV 198
            KYK RLVA+G  QI GIHY E  +P    A+ +++L+  A++DWE+   D + AYL APID+ +++
Sbjct:  754 KYKVRLVANGRTQIHGIHYTETYAPVVRHATLRVLLTFGAVRDWEIHQADVKNAYLNAPIDETVYM 819          
BLAST of mRNA_H-paniculata_contig42698.10917.1 vs. uniprot
Match: A0A6P0VAD0_9CYAN (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Symploca sp. SIO1C2 TaxID=2607769 RepID=A0A6P0VAD0_9CYAN)

HSP 1 Score: 67.0 bits (162), Expect = 2.880e-11
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 KYKCRLVAHGNRQIKGIHYQEASSPAPAAASTKMVLSLAAIQDWELRHVDFEQAYLQAPIDQEIFVEIP 207
            KYK RL   G+R  KG HY    +P  + AS +M+L+LAA+ +W    +D+  AY QAP+++EI++E+P
Sbjct:  950 KYKARLNIDGSRMRKGQHYDLTYAPVASWASVRMLLTLAAVHNWHTTQIDYVLAYPQAPVEREIYMELP 1018          
BLAST of mRNA_H-paniculata_contig42698.10917.1 vs. uniprot
Match: A0A8H7TXH5_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7TXH5_9APHY)

HSP 1 Score: 66.6 bits (161), Expect = 3.950e-11
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 KYKCRLVAHGNRQIKGIHYQEASSPAPAAASTKMVLSLAAIQDWELRHVDFEQAYLQAPIDQEIFVEIP 207
            K+K RL A G  Q+ GI Y E ++P  + +S ++VL+LAA  DWE+  +DF+ AYL   +D+ I++  P
Sbjct:  778 KFKARLCAQGFSQVYGIDYVETAAPTASLSSLRLVLALAAANDWEIHQIDFKNAYLNGDLDETIYMRQP 846          
BLAST of mRNA_H-paniculata_contig42698.10917.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY)

HSP 1 Score: 66.2 bits (160), Expect = 5.330e-11
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    1 KYKCRLVAHGNRQIKGIHYQEASSPAPAAASTKMVLSLAAIQDWELRHVDFEQAYLQAPIDQEIFVEIP 207
            K+K RL A G  Q+ G+ Y + ++P    AS ++VL+LAA  DWE+  +DF+ AYL   +D+ I++  P
Sbjct:  282 KFKARLCAQGFSQVHGVDYDQTAAPTARLASLRLVLALAAANDWEVHQIDFKNAYLNGDLDETIYMRQP 350          
BLAST of mRNA_H-paniculata_contig42698.10917.1 vs. uniprot
Match: A0A4S4M1W0_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1W0_9APHY)

HSP 1 Score: 66.2 bits (160), Expect = 5.420e-11
Identity = 27/69 (39.13%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 KYKCRLVAHGNRQIKGIHYQEASSPAPAAASTKMVLSLAAIQDWELRHVDFEQAYLQAPIDQEIFVEIP 207
            KYK RLVA G  Q+ G+ Y E  +P    +S +++L++AA  +W+++  DF  AYL +P+D+++++E P
Sbjct: 1217 KYKARLVARGFTQVHGVDYFETFAPVAKLSSFRLLLAIAARNNWDIKSFDFSSAYLNSPLDEDVYMEQP 1285          
BLAST of mRNA_H-paniculata_contig42698.10917.1 vs. uniprot
Match: A0A0W0FDG7_9AGAR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Moniliophthora roreri TaxID=221103 RepID=A0A0W0FDG7_9AGAR)

HSP 1 Score: 65.9 bits (159), Expect = 7.190e-11
Identity = 30/69 (43.48%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 KYKCRLVAHGNRQIKGIHYQEASSPAPAAASTKMVLSLAAIQDWELRHVDFEQAYLQAPIDQEIFVEIP 207
            +YK RLVA G  Q+KGI Y E  SP     + +++L+LAA++DWE++ +D + A+L   +D+EI++E P
Sbjct:   71 RYKARLVAKGFSQVKGIDYDELFSPVVHFETVRVLLALAALEDWEIQVLDVKTAFLYGELDKEIYMEQP 139          
BLAST of mRNA_H-paniculata_contig42698.10917.1 vs. uniprot
Match: A0A0V0GGR6_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GGR6_SOLCH)

HSP 1 Score: 61.6 bits (148), Expect = 1.380e-10
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    1 KYKCRLVAHGNRQIKGIHYQEASSPAPAAASTKMVLSLAAIQDWELRHVDFEQAYLQAPIDQEIFVEIP 207
            +YK RLVA G  Q  GI Y E  +P     + +++LSLAA+ +W L+  D + A+L   +D+EI++E+P
Sbjct:   19 RYKARLVAKGYTQTYGIDYLETFAPVAKMNTVRILLSLAAVFNWNLQQFDVKNAFLHGDLDEEIYMEVP 87          
BLAST of mRNA_H-paniculata_contig42698.10917.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 64.7 bits (156), Expect = 1.860e-10
Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 KYKCRLVAHGNRQIKGIHYQEASSPAPAAASTKMVLSLAAIQDWELRHVDFEQAYLQAPIDQEIFVEIP 207
            +YK RLV  G  Q+ G+ +QE  SP    +S + ++S+AA++DW++ H+D + AYL   +++EI+V  P
Sbjct:  285 RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPP 353          
BLAST of mRNA_H-paniculata_contig42698.10917.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 64.7 bits (156), Expect = 1.890e-10
Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 KYKCRLVAHGNRQIKGIHYQEASSPAPAAASTKMVLSLAAIQDWELRHVDFEQAYLQAPIDQEIFVEIP 207
            +YK RLV  G  Q+ G+ +QE  SP    +S + ++S+AA++DW++ H+D + AYL   +++EI+V  P
Sbjct:  890 RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPP 958          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42698.10917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H6YZQ1_9AGAR9.350e-1342.03Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H7CEA5_9AGAR2.380e-1245.45Retrovirus-related Pol polyprotein from transposon... [more]
A0A6P0VAD0_9CYAN2.880e-1143.48DDE-type integrase/transposase/recombinase (Fragme... [more]
A0A8H7TXH5_9APHY3.950e-1142.03Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H7NVE6_9APHY5.330e-1140.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4M1W0_9APHY5.420e-1139.13Uncharacterized protein (Fragment) n=1 Tax=Antrodi... [more]
A0A0W0FDG7_9AGAR7.190e-1143.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0V0GGR6_SOLCH1.380e-1040.58Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A6H5GI29_9HEMI1.860e-1039.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI1.890e-1039.13Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42698contigH-paniculata_contig42698:1..219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue3.2e-09
Seed eggNOG ortholog159749.K0TF56
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs2XEGG@2836,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930297.8149552-CDS-H-paniculata_contig42698:0..2191622930297.8149552-CDS-H-paniculata_contig42698:0..219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42698 1..219 -
1691481230.6867158-CDS-H-paniculata_contig42698:0..2191691481230.6867158-CDS-H-paniculata_contig42698:0..219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42698 1..219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42698.10917.1prot_H-paniculata_contig42698.10917.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42698 1..219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42698.10917.1

>prot_H-paniculata_contig42698.10917.1 ID=prot_H-paniculata_contig42698.10917.1|Name=mRNA_H-paniculata_contig42698.10917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
KYKCRLVAHGNRQIKGIHYQEASSPAPAAASTKMVLSLAAIQDWELRHVD
FEQAYLQAPIDQEIFVEIPIKTR
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mRNA from alignment at H-paniculata_contig42698:1..219-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42698.10917.1 ID=mRNA_H-paniculata_contig42698.10917.1|Name=mRNA_H-paniculata_contig42698.10917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig42698:1..219- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATATAAGTGCCGTCTGGTCGCCCACGGAAACCGTCAGATCAAGGGCAT CCACTACCAGGAAGCTTCGTCCCCTGCACCCGCAGCGGCCAGCACAAAAA TGGTGTTATCGCTTGCGGCAATCCAGGACTGGGAGCTACGGCACGTCGAC TTTGAACAAGCGTACCTGCAGGCGCCCATCGACCAGGAGATTTTCGTCGA AATTCCTATAAAAACCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig42698:1..219-

>mRNA_H-paniculata_contig42698.10917.1 ID=mRNA_H-paniculata_contig42698.10917.1|Name=mRNA_H-paniculata_contig42698.10917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig42698:1..219- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATATAAGTGCCGTCTGGTCGCCCACGGAAACCGTCAGATCAAGGGCAT
CCACTACCAGGAAGCTTCGTCCCCTGCACCCGCAGCGGCCAGCACAAAAA
TGGTGTTATCGCTTGCGGCAATCCAGGACTGGGAGCTACGGCACGTCGAC
TTTGAACAAGCGTACCTGCAGGCGCCCATCGACCAGGAGATTTTCGTCGA
AATTCCTATAAAAACCCGGAAATATAAGTGCCGTCTGGTCGCCCACGGAA
ACCGTCAGATCAAGGGCATCCACTACCAGGAAGCTTCGTCCCCTGCACCC
GCAGCGGCCAGCACAAAAATGGTGTTATCGCTTGCGGCAATCCAGGACTG
GGAGCTACGGCACGTCGACTTTGAACAAGCGTACCTGCAGGCGCCCATCG
ACCAGGAGATTTTCGTCGAAATTCCTATAAAAACCCGG
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